Works Published in 2008
Displaying works 1 - 20 of 67 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2008 journal article
Incorporation of the Noncoding <i>roX</i> RNAs Alters the Chromatin-Binding Specificity of the <i>Drosophila</i> MSL1/MSL2 Complex
Molecular and Cellular Biology, 28(8), 2850–2850.
www.ncbi.nlm.nih.gov (repository)
Sources: Crossref, ORCID
Added: January 29, 2024
2008 journal article
How do ncRNAs guide chromatin-modifying complexes to specific locations within the nucleus?
RNA Biology, 5(1), 13–16.
TL;DR:
Evidence is discussed that ncRNAs function by annealing either with nascent transcripts or with homologous DNA sequences, and a third model is reviewed based on the recent work on the role of the noncoding roX RNAs in the localisation of the MSL complex to sites on the X chromosome in Drosophila.
(via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 29, 2024
2008 conference paper
Linkage Analysis in American Staffordshire Terriers with Hereditary Cerebellar Cortical Degeneration
Journal of Veterinary Internal Medicine, 22(3), 723–724.
Event: 26th Annual American College of Veterinary Internal Medicine Forum at San Antonio, TX on June 4-7, 2008
Source: NC State University Libraries
Added: March 19, 2021
2008 journal article
Does strong linkage disequilibrium guarantee redundant association results?
Genetic Epidemiology, 32(6), 546–552.
author keywords: linkage disequilibrium; association mapping; negative correlation; case control; transmission disequilibrium
MeSH headings : Computer Simulation; Gene Frequency; Genetic Markers; Genome, Human; Haplotypes; Humans; Linkage Disequilibrium; Models, Genetic; Models, Statistical; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable
TL;DR:
This work finds that in the null hypothesis situation, where there is no association between the markers and the phenotype, the relationship between LD and the correlation between association test outcomes is clear, though it is not always ideal.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Sources: Crossref, ORCID
Added: September 5, 2020
2008 journal article
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels
The Plant Cell Online, 20(2), 337–352.
Contributors: P. Leivar *, E. Monte *, B. Al-Sady *, C. Carle*, A. Storer*, J. Alonso *, J. Ecker *, P. Quail *
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Basic Helix-Loop-Helix Transcription Factors / genetics; Basic Helix-Loop-Helix Transcription Factors / metabolism; Electrophoretic Mobility Shift Assay; Gene Expression Regulation, Plant / radiation effects; Immunoprecipitation; Light; Microscopy, Fluorescence; Molecular Sequence Data; Phytochrome / genetics; Phytochrome / metabolism; Phytochrome B / genetics; Phytochrome B / metabolism; Plants, Genetically Modified; Protein Binding; Seedlings / genetics; Seedlings / metabolism; Sequence Homology, Amino Acid; Two-Hybrid System Techniques
TL;DR:
The role of these phyB-interacting bHLH factors in modulating seedling deetiolation in prolonged red light may not be as phy-activated signaling intermediates, as proposed previously, but as direct modulators of the abundance of the photoreceptor.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2008 journal article
Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis
The Plant Cell Online, 20(2), 320–336.
Contributors: J. Hu *, M. Mitchum *, N. Barnaby*, B. Ayele, M. Ogawa*, E. Nam *, W. Lai *, A. Hanada, J. Alonso *, J. Ecker *
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Flowers / genetics; Flowers / growth & development; Flowers / metabolism; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gibberellins / biosynthesis; Mixed Function Oxygenases / genetics; Mixed Function Oxygenases / metabolism; Mutation; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Seeds / genetics; Seeds / metabolism
TL;DR:
The data suggest that de novo synthesis of active GAs is necessary for stamen development in early flowers and that bioactive GAs made in the stamens and/or flower receptacles are transported to petals to promote their growth.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2008 journal article
Statistical Methods for Mapping Multiple QTL
International Journal of Plant Genomics, 2008, 1–8.
TL;DR:
This article focuses the discussion on the statistical methods for mapping multiple QTL by maximum likelihood and Bayesian methods and also on determining appropriate thresholds for the analysis.
(via Semantic Scholar)
Source: Crossref
Added: July 20, 2019
2008 journal article
Epigenomic Consequences of Immortalized Plant Cell Suspension Culture
PLoS Biology, 6(12), e302.
Ed(s): W. Reik
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Base Sequence; Cells, Cultured; Chromatin Immunoprecipitation; Chromosomes, Plant / physiology; DNA Methylation; DNA Transposable Elements / genetics; Epigenesis, Genetic / genetics; Gene Expression; Genes, Plant / genetics; Genome, Plant; Histones / metabolism; Plant Leaves / chemistry; RNA, Plant / chemistry; RNA, Small Interfering / metabolism
TL;DR:
It is found that euchromatin becomes hypermethylated in culture and that a small percentage of the hyper methylated genes become associated with heterochromatic marks.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Crossref
Added: February 14, 2019
2008 patent
Methods and compositions for protein production in tobacco plants with reduced nicotine
Source: NC State University Libraries
Added: August 6, 2018
2008 patent
Lactobacillus acidophilus nucleic acids and uses thereof
Source: NC State University Libraries
Added: August 6, 2018
2008 patent
Lactobacillus acidophilus nucleic acid sequences encoding protease homologues and uses therefore
Source: NC State University Libraries
Added: August 6, 2018
2008 patent
Lactobacillus acidophilus nucleic acid sequences encoding carbohydrate utilization-related proteins and uses therefor
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(49), 19474–19479.
author keywords: lactobacilli; DC-SIGN
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / immunology; Bacterial Proteins / metabolism; Cell Differentiation / immunology; Cell Line; Cytokines / metabolism; Dendritic Cells / immunology; Dendritic Cells / microbiology; Immune Tolerance / immunology; Kidney / cytology; Lactobacillus acidophilus / genetics; Lactobacillus acidophilus / immunology; Lactobacillus acidophilus / metabolism; Macrophages / immunology; Macrophages / microbiology; Membrane Glycoproteins / genetics; Membrane Glycoproteins / immunology; Membrane Glycoproteins / metabolism; Mutagenesis; Probiotics; T-Lymphocytes / immunology; T-Lymphocytes / microbiology; Toll-Like Receptor 2 / genetics; Toll-Like Receptor 2 / metabolism; Toll-Like Receptor 4 / genetics; Toll-Like Receptor 4 / metabolism; Transfection
TL;DR:
The major S layer protein, SlpA, of L. acidophilus NCFM is the first probiotic bacterial DC-SIGN ligand identified that is functionally involved in the modulation of DCs and T cells functions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 review
Epigenomic consequences of immortalized plant cell suspension culture
[Review of ]. PLoS Biology, 6(12), 2880–2895.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
The Red clover necrotic mosaic virus RNA-2 encoded movement protein is a second suppressor of RNA silencing
VIROLOGY, 381(2), 277–286.
author keywords: TCV-sGFP; Red clover necrotic mosaic virus; RCNMV; Movement protein; MP; VSR; RNA silencing
MeSH headings : Carmovirus / genetics; Carmovirus / metabolism; Genetic Complementation Test; Green Fluorescent Proteins / metabolism; Plant Viral Movement Proteins / metabolism; RNA Interference; RNA, Viral / genetics; RNA, Viral / metabolism; Tombusviridae / genetics; Tombusviridae / metabolism
TL;DR:
A newly developed viral-based assay for the identification of silencing suppression activity was used to provide evidence for a second, mechanistically distinct method ofsilencing suppression provided for by the RCNMV movement protein (MP).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Quantitative Trait Loci Mapping and The Genetic Basis of Heterosis in Maize and Rice
GENETICS, 180(3), 1707–1724.
MeSH headings : Chromosome Mapping; Crosses, Genetic; Epistasis, Genetic; Hybrid Vigor / genetics; Models, Genetic; Oryza / genetics; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
The results show that heterosis in maize is mainly due to dominant gene action, although overdominance of individual QTL could not completely be ruled out due to the mapping resolution and limitations of NC design III.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Cryptic genetic variation
Current Biology, 18(21), R989–990.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Convergent Evolution in the Genetic Basis of Mullerian Mimicry in Heliconius Butterflies
GENETICS, 180(3), 1567–1577.
MeSH headings : Adaptation, Biological / genetics; Amplified Fragment Length Polymorphism Analysis; Animals; Biomimetics; Body Patterning; Butterflies / physiology; Chromosome Mapping; Chromosomes, Artificial, Bacterial; Crosses, Genetic; Evolution, Molecular; Genes, Insect; Genetic Drift; Genetic Linkage; Genetic Markers; Genetic Variation; Phenotype; Predatory Behavior; Selection, Genetic; Wings, Animal / anatomy & histology; Wings, Animal / physiology
TL;DR:
Comparative genetic mapping shows red wing color loci are in homologous regions of the genome of H. erato and H. melpomene and implies they evolved independently using somewhat different developmental routes, but are nonetheless regulated by the same switch locus.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 363(1512), 3931–3939.
author keywords: variable-length Markov model; profile hidden Markov model; insertion-deletion model; scaled selection coefficient; fitness; Pfam
MeSH headings : Computer Simulation; DNA / genetics; Evolution, Molecular; Genetics, Population; INDEL Mutation / genetics; Markov Chains; Models, Genetic; Population Density; Proteins / genetics; Selection, Genetic
TL;DR:
This work explores how to construct time-reversible evolutionary models that yield stationary distributions of sequences that match given target distributions, and introduces an insertion–deletion model that describes selectively neutral evolutionary changes to DNA.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative
BIOINFORMATICS, 24(19), 2177–2183.
MeSH headings : Algorithms; Animals; Basic-Leucine Zipper Transcription Factors / chemistry; Basic-Leucine Zipper Transcription Factors / genetics; Computational Biology; Databases, Protein; Evolution, Molecular; Genes, myc; Humans; Proteins / chemistry; Proteins / genetics; Sequence Alignment; Tumor Suppressor Protein p53 / chemistry; Tumor Suppressor Protein p53 / genetics
TL;DR:
An algorithm to simultaneously infer the set of n-1 relative rates that parameterize the likelihood of an n-site alignment is described, allowing for the first time coherent simultaneous inference of branch-lengths and site-specific evolutionary rates.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
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