Works Published in 2011

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Displaying works 1 - 20 of 71 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2011 journal article

Abnormal Dosage Compensation of Reporter Genes Driven by the Drosophila Glass Multiple Reporter (GMR) Enhancer-Promoter

PLoS ONE, 6(5), e20455.

By: C. Laverty*, F. Li*, E. Belikoff* & M. Scott*

Ed(s): A. Bergmann

TL;DR: The gene promoter can affect MSL complex-mediated upregulation and dosage compensation and it appears that the nature of the basal promoter and the presence of binding sites for specific factors influence the ability of a gene promoter to respond to the MSLcomplex. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: January 29, 2024

2011 journal article

Gene Expression profile and response to maize kernels by Aspergillus flavus

Phytopathology, 101(7), 797–804.

By: B. Reese, G. Payne, D. Nielsen* & C. Woloshuk

MeSH headings : 6-Phytase / genetics; 6-Phytase / metabolism; Aflatoxins / biosynthesis; Aspergillus flavus / enzymology; Aspergillus flavus / genetics; Aspergillus flavus / growth & development; Aspergillus flavus / pathogenicity; Down-Regulation; Gene Expression Profiling / methods; Gene Expression Regulation, Fungal / genetics; Oligonucleotide Array Sequence Analysis / methods; Reverse Transcriptase Polymerase Chain Reaction; Seeds / microbiology; Sequence Deletion; Transformation, Genetic; Up-Regulation; Virulence; Zea mays / growth & development; Zea mays / microbiology
TL;DR: The study revealed the genome-wide effects of immature maize kernels on A. flavus and suggest that phytase has a role in pathogenesis, and the fungal response to the kernel environment during colonization. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: March 19, 2021

2011 journal article

Genome-wide linkage study of atopic dermatitis in West Highland White Terriers

BMC Genetics, 12(1), 37.

By: C. Salzmann n, T. Olivry n, D. Nielsen n, J. Paps n, T. Harris n & N. Olby n

MeSH headings : Animals; Chromosome Mapping; Dermatitis, Atopic / genetics; Dermatitis, Atopic / veterinary; Dog Diseases / genetics; Dogs; Genetic Linkage; Genotype
TL;DR: The study was unable to detect any chromosomal regions significantly linked to canine AD, and a genome-wide SNP association study in a larger cohort of WHWTs may prove more successful by providing higher density coverage and higher statistical power. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 5, 2020

2011 journal article

Complex genetic architecture of Drosophila aggressive behavior

Proceedings of the National Academy of Sciences, 108(41), 17070–17075.

By: L. Zwarts*, M. Magwire*, M. Carbone*, M. Versteven*, L. Herteleer*, R. Anholt n, P. Callaerts*, T. Mackay*

MeSH headings : Aggression / physiology; Animals; Behavior, Animal / physiology; Brain / anatomy & histology; Crosses, Genetic; Drosophila melanogaster / anatomy & histology; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Epistasis, Genetic; Evolution, Molecular; Female; Gene Expression; Gene Regulatory Networks; Genes, Insect; Male; Mutation; Phenotype
TL;DR: The transcriptional signatures of homozygous and double heterozygous genotypes derived from the six mutations imply a large mutational target for aggressive behavior and point to evolutionarily conserved genetic mechanisms and neural signaling pathways affecting this universal fitness trait. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Crossref
Added: August 28, 2020

2011 journal article

New approach for the study of mite reproduction: The first transcriptome analysis of a mite, Phytoseiulus persimilis (Acari: Phytoseiidae)

Journal of Insect Physiology, 57(1), 52–61.

By: A. Cabrera n, K. Donohue n, S. Khalil n, E. Scholl n, C. Opperman n, D. Sonenshine*, R. Roe n

author keywords: Mite; Acari; Phytoseiidae; Transcriptome; 454; Vitellogenin; Vitellin; Yolk protein; Vitellogenin receptor; Yolk protein receptor; Tick; Female reproduction
MeSH headings : Animals; Female; Gene Expression Profiling / methods; Gene Expression Regulation; Male; Mites / classification; Mites / genetics; Mites / growth & development; Mites / physiology; Molecular Sequence Data; Phylogeny; Proteins / genetics; Proteins / metabolism
TL;DR: The objective of this project was to obtain DNA-sequence information of expressed genes from P. persimilis with special interest in sequences corresponding to vitellogenin (Vg) and the viteLLogenin receptor (VGR) which are critical to the understanding ofvitellogenesis. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
Source: Crossref
Added: August 28, 2020

2011 journal article

QTL Mapping for Days to Flowering under Drought Condition in Rice (Oryza sativa L.) Genome

Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 39(1), 58.

TL;DR: The five common QTL detected by at least two models could be considered as stable QTL for days to flowering under drought and might be of practical use in marker assisted selection. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: Crossref
Added: July 20, 2019

2011 journal article

The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

PLANT CELL, 23(11), 3961–3973.

MeSH headings : Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytochrome P-450 Enzyme System / genetics; Cytochrome P-450 Enzyme System / metabolism; Gene Knockdown Techniques; Indoleacetic Acids / metabolism; Indoles / metabolism; Oxygenases / genetics; Oxygenases / metabolism; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
TL;DR: Results strongly suggest that the enzymatic reactions involved in indole-3-acetic acid (IAA) production via IPyA are different than those previously postulated, and a new and testable model for how IAA is produced in plants is needed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 personal communication

Probiotic and prebiotic claims in Europe: seeking a clear roadmap

Guarner, F., Sanders, M. E., Gibson, G., Klaenhammer, T., Cabana, M., Scott, K., … Hill, C. (2011, December).

By: F. Guarner, M. Sanders, G. Gibson*, T. Klaenhammer n, M. Cabana*, K. Scott*, G. Reid*, N. Delzenne*, G. Fahey*, C. Hill*

MeSH headings : Europe; Prebiotics; Probiotics
TL;DR: The scientists and clinical investigators belonging to the Board of Directors of the International Scientific Association for Probiotics and Prebiotics (ISAPP) are concerned that claims supported by solid scientific evidence are also being rejected, and there is a lack of clarity regarding the criteria – from study design through wording of the claim – for a dossier suitable for a positive regulatory opinion. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

A Small-Molecule Screen Identifies L-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis

PLANT CELL, 23(11), 3944–3960.

By: W. He*, J. Brumos n, H. Li*, Y. Ji*, M. Ke*, X. Gong*, Q. Zeng*, W. Li* ...

Contributors: W. He*, J. Brumos n, H. Li*, Y. Ji*, M. Ke*, X. Gong*, Q. Zeng*, W. Li* ...

MeSH headings : Arabidopsis / drug effects; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; DNA-Binding Proteins; Enzyme Inhibitors / pharmacology; Ethylenes / metabolism; Ethylenes / pharmacology; F-Box Proteins / metabolism; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Kynurenine / chemistry; Kynurenine / metabolism; Kynurenine / pharmacology; Models, Molecular; Nuclear Proteins / metabolism; Plant Roots / drug effects; Plant Roots / growth & development; Plant Roots / metabolism; Small Molecule Libraries; Transcription Factors / metabolism; Tryptophan Transaminase / antagonists & inhibitors; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
TL;DR: This work identifies a small molecule, l-kynurenine (Kyn), which effectively inhibited ethylene responses in Arabidopsis thaliana root tissues and describes a previously undiscovered positive feedback loop between auxin biosynthesis and ethylene signaling pathways in roots. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Enteric Microbiome Metabolites Correlate with Response to Simvastatin Treatment

PLOS ONE, 6(10).

By: R. Kaddurah-Daouk*, R. Baillie*, H. Zhu n, Z. Zeng n, M. Wiest*, U. Nguyen*, K. Wojnoonski, S. Watkins*, M. Trupp*, R. Krauss

MeSH headings : Bile Acids and Salts / metabolism; Cholesterol, LDL / blood; Demography; Female; Gastrointestinal Tract / drug effects; Gastrointestinal Tract / metabolism; Gastrointestinal Tract / microbiology; Humans; Liver-Specific Organic Anion Transporter 1; Male; Metabolomics; Metagenome / drug effects; Middle Aged; Models, Biological; Organic Anion Transporters / genetics; Pharmacogenetics; Polymorphism, Single Nucleotide / genetics; Simvastatin / pharmacology; Treatment Outcome
TL;DR: Interactions between genome, gut microbiome and environmental influences should be considered in the study and management of cardiovascular disease and metabolic profiles could provide valuable information about treatment outcomes and could contribute to a more personalized approach to therapy. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Wing patterning gene redefines the mimetic history of Heliconius butterflies

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(49), 19666–19671.

author keywords: Mullerian mimicry; population genetics; phylogeography
TL;DR: A long-standing debate about the origins of the races within each species is resolved, supporting the hypothesis that the red-rayed Amazonian pattern evolved recently and expanded, causing disjunctions of more ancestral patterns. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Tomato SlSnRK1 Protein Interacts with and Phosphorylates beta C1, a Pathogenesis Protein Encoded by a Geminivirus beta-Satellite

PLANT PHYSIOLOGY, 157(3), 1394–1406.

MeSH headings : DNA, Viral / metabolism; Geminiviridae / metabolism; Geminiviridae / pathogenicity; Gene Expression Regulation, Plant; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / virology; Mutation / genetics; Phosphorylation; Phosphoserine / metabolism; Phosphothreonine / metabolism; Plant Diseases / virology; Plant Proteins / chemistry; Plant Proteins / genetics; Plant Proteins / metabolism; Protein Binding; Protein Interaction Domains and Motifs; Satellite Viruses / metabolism; Satellite Viruses / pathogenicity; Subcellular Fractions / metabolism; Viral Proteins / chemistry; Viral Proteins / metabolism
TL;DR: Results suggested that the SlSnRK1 protein attenuates geminivirus infection by interacting with and phosphorylating the βC1 protein. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets

BMC MICROBIOLOGY, 11.

By: B. Troxell n, R. Fink n, S. Porwollik*, M. McClelland* & H. Hassan n

MeSH headings : Anaerobiosis; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression Regulation, Bacterial; Iron / metabolism; Oxygen / metabolism; Regulon; Repressor Proteins / genetics; Repressor Proteins / metabolism; Salmonella typhimurium / genetics; Salmonella typhimurium / metabolism
TL;DR: This work identified twenty-six new targets of Fur regulation, and demonstrates that H-NS repressed genes are down-regulated in Δfur, indicating that Fur is a positive factor in ftnB regulation, while serving to repress the expression of hmpA. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Re-evaluation of the life-cycle of the nematode-parasitic bacterium Pasteuria penetrans in root-knot nematodes, Meloidogyne spp.

NEMATOLOGY, 13, 825–835.

By: K. Davies n, J. Rowe*, R. Manzanilla-Lopez* & C. Opperman n

author keywords: bacteria; biological control; rod-shaped bacilli; scanning electron microscopy
TL;DR: A new life-cycle for Pasteuria is described consisting of three phases: Phase I: attachment and germination; Phase II: rhizoid production and exponential growth; and Phase III: sporogenesis, showing a high degree of similarity to the developmental stages seen in other Bacillus spp. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Production of ELOVL4 transgenic pigs: a large animal model for Stargardt-like macular degeneration

BRITISH JOURNAL OF OPHTHALMOLOGY, 95(12), 1749–1754.

By: J. Sommer n, J. Estrada n, E. Collins n, M. Bedell*, C. Alexander n, Z. Yang*, G. Hughes*, B. Mir n ...

MeSH headings : Animals; Animals, Genetically Modified; Disease Models, Animal; Electroretinography; Eye Proteins / biosynthesis; Eye Proteins / genetics; Gene Deletion; Immunohistochemistry; Macular Degeneration / metabolism; Macular Degeneration / pathology; Macular Degeneration / physiopathology; Membrane Proteins / biosynthesis; Membrane Proteins / genetics; Microscopy, Fluorescence; Mutation; Retina / metabolism; Retina / pathology; Retina / physiopathology; Swine
TL;DR: These transgenic pigs provide unique animal models for examining macular degeneration and STGD3 pathogenesis and direct fluorescence microscopy indicated that the Y270terEYFP protein is expressed in photoreceptors and mislocalised within the cell. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Interaction between Geminivirus Replication Protein and the SUMO-Conjugating Enzyme Is Required for Viral Infection

JOURNAL OF VIROLOGY, 85(19), 9789–9800.

By: M. Sanchez-Duran*, M. Dallas n, J. Ascencio-Ibanez n, M. Reyes n, M. Arroyo-Mateos*, J. Ruiz-Albert*, L. Hanley-Bowdoin n, E. Bejarano*

MeSH headings : Amino Acid Substitution; Binding Sites; DNA Mutational Analysis; Geminiviridae / pathogenicity; Host-Pathogen Interactions; Mutagenesis, Site-Directed; Mutant Proteins / genetics; Mutant Proteins / metabolism; Protein Binding; Protein Interaction Mapping; Sequence Deletion; Tobacco / virology; Ubiquitin-Conjugating Enzymes / metabolism; Viral Proteins / genetics; Viral Proteins / metabolism
TL;DR: The results established the importance of AL1-SCE1 interactions during geminivirus infection of plants and suggested that AL1 alters the sumoylation of selected host factors to create an environment suitable for viral infection. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Genetic Modulation of Rpd3 Expression Impairs Long-Term Courtship Memory in Drosophila

PLoS ONE, 6(12), e29171.

Ed(s): E. Skoulakis

MeSH headings : Animals; Brain / metabolism; Courtship; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / enzymology; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Knockdown Techniques; Histone Deacetylase 1 / genetics; Histone Deacetylase 1 / metabolism; Histone Deacetylases / metabolism; Memory, Long-Term / physiology; Phenotype; RNA Interference; Survival Analysis; Tubulin / metabolism
TL;DR: It is found that while modulation of Rpd3 levels predominantly in the adult mushroom body had no observed impact on immediate recall or one-hour memory, 24-hour LTM was severely impaired and surprisingly, both overexpression as well as RNAi-mediated knockdown of RPD3 resulted in impairment of long-term courtship memory. (via Semantic Scholar)
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2011 journal article

Epidermal growth factor receptor promotes glomerular injury and renal failure in rapidly progressive crescentic glomerulonephritis

Nature Medicine, 17(10), 1242–1272.

By: G. Bollee, M. Flamant, S. Schordan, C. Fligny, E. Rumpel, M. Milon, E. Schordan, N. Sabaa ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Comparing the genetic architecture and potential response to selection of invasive and native populations of reed canary grass

EVOLUTIONARY APPLICATIONS, 4(6), 726–735.

author keywords: G matrix; invasive species; quantitative genetics; reed canary grass; selection skewers
TL;DR: It is found that differences in the evolutionary potential of Phalaris populations are driven by differences in latitude, suggesting that selection also shapes the evolutionary trajectory of invasive populations. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Transcriptomic Characterization of a Synergistic Genetic Interaction during Carpel Margin Meristem Development in Arabidopsis thaliana

PLOS ONE, 6(10).

Contributors: A. Wynn n, E. Rueschhoff* & R. Franks n

MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Flowers / genetics; Flowers / growth & development; Flowers / metabolism; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Developmental / physiology; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; In Situ Hybridization; Meristem / genetics; Meristem / growth & development; Meristem / metabolism; Plants, Genetically Modified / genetics; Plants, Genetically Modified / growth & development; Plants, Genetically Modified / metabolism; Protein Binding; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR: This study identifies a diverse set of transcripts that display altered expression in the seu ant double mutant tissues and identifies the regulatory hierarchy controlled by SEU and ANT that will clarify the molecular mechanism of the functional redundancy of these two genes and illuminate the developmental and molecular events required for CMM development and ovule initiation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

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