Works Published in 2013
Displaying works 1 - 20 of 52 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2013 journal article
Sex determination mechanisms in the Calliphoridae (blow flies)
Sexual Development, 8(1-3), 29–37.
Source: ORCID
Added: January 29, 2024
2013 journal article
Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response
Plant Physiology, 162(1), 212–224.
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytokinins / metabolism; Gene Expression Regulation, Plant; Multigene Family; Mutagenesis, Insertional; Phenotype; Plant Growth Regulators / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; RNA, Plant / genetics; Regulatory Sequences, Nucleic Acid; Seedlings / genetics; Seedlings / growth & development; Seedlings / metabolism; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism; Transgenes
TL;DR:
The results indicate that type-B ARR expression profiles in the plant, along with posttranscriptional regulation, play significant roles in modulating their contribution to cytokinin signaling.
(via Semantic Scholar)
www.plantphysiol.org (publisher PDF)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Crossref, NC State University Libraries
Added: October 9, 2021
2013 journal article
A method for detecting hidden additivity in two-factor unreplicated experiments
Computational Statistics & Data Analysis, 67, 95–104.
author keywords: Interaction effects; Latent variables; Non-additivity
TL;DR:
A multiplicity-adjusted all-configurations maximum interaction F (ACMIF) test to detect hidden additivity is developed and is illustrated using two data sets taken from the literature and a third taken from a recent study of copy number variation due to lymphoma.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Crossref, NC State University Libraries
Added: September 5, 2020
2013 conference paper
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants
2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.
Contributors: K. Merchante n, Q. Hu n, A. Stepanova n , J. Eonso & S. Heber n
TL;DR:
The goal of this project is to develop genomic tools for the qualitative and quantitative characterization of the plant translatome, and it is hoped ribosome footprinting will allow researchers to correlate precisely mRNA features with translation efficiency, and open the way to investigate globally the mechanism of protein synthesis and its regulation at an unprecedented level of detail.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2013 journal article
Molecular mechanisms of ethylene–auxin interactions
Molecular Plant, sst113.
Contributors: L. Robles, A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2013 journal article
Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification
Cancer Informatics, 12, CIN.S10212.
author keywords: support vector machine (SVM); multi-class SVM; variable selection; shrinkage methods; classification; microarray; cancer classification
TL;DR:
The method is improved by introducing soft-thresholding type penalties to incorporate variable selection into multi-class classification for high dimensional data and demonstrates that the new methods can select a small number of genes for building accurate multi- class classification rules.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Crossref
Added: July 20, 2019
2013 journal article
Characterization of the sequence and expression pattern of LFY homologues from dogwood species (Cornus) with divergent inflorescence architectures
Annals of Botany, 112(8), 1629–1641.
Contributors: J. Liu n, R. Franks n , C. Feng n, X. Liu, C. Fu * & Q. Xiang n
author keywords: Cornus; dogwood; inflorescence evolution; LFY homologues; CorLFY expression; RTPCR; in situ hybridization
MeSH headings : Amino Acid Sequence; Base Sequence; Cornus / anatomy & histology; Cornus / genetics; Cornus / growth & development; Exons / genetics; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; In Situ Hybridization; Inflorescence / anatomy & histology; Inflorescence / genetics; Inflorescence / growth & development; Molecular Sequence Data; Phylogeny; Plant Proteins / chemistry; Plant Proteins / genetics; Plant Proteins / metabolism; Sequence Homology, Amino Acid
TL;DR:
A role for CorLFY genes during floral and inflorescence development in dogwoods is suggested, however, the failure to detect expression differences between the inflorescence types in the Cornus species analysed suggests that the evolutionary shift between major inflorescencetypes in the genus is not controlled by dramatic alterations in the levels of CorL FY gene transcript accumulation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: ORCID
Added: January 22, 2019
2013 review
Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria
[Review of ]. FRONTIERS IN MICROBIOLOGY, 4.
author keywords: probiotic; sortase; sortase-dependent protein; LPXTG; lactic acid bacteria; lactobacillus; lactococcus
TL;DR:
This review examines the collection of studies which evaluate sortase and SDPs in select species of dairy-associated and health promoting LAB and sheds light on their important roles in mediating nutrient acquisition through proteinase P as well as positive probiotic attributes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Identification of a Novel Polymorphism in X-Linked Sterol-4-Alpha-Carboxylate 3-Dehydrogenase (Nsdhl) Associated with Reduced High-Density Lipoprotein Cholesterol Levels in I/LnJ Mice
G3-GENES GENOMES GENETICS, 3(10), 1819–1825.
author keywords: QTL; genomics; HDL cholesterol; Nsdhl
MeSH headings : 3-Hydroxysteroid Dehydrogenases / genetics; Animals; Animals, Inbred Strains; Apolipoprotein A-II / genetics; Cholesterol, HDL / blood; Cholesterol, HDL / genetics; Genetic Linkage; Lipid Metabolism / genetics; Mice; Polymorphism, Single Nucleotide; Quantitative Trait Loci; X Chromosome / genetics
TL;DR:
There are additional genes left to be identified that control lipid levels and that can provide new pharmaceutical targets, including sterol-4-alpha-carboxylate 3-dehydrogenase in the cholesterol synthesis pathway.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
The Histone Deacetylase HDAC4 Regulates Long-Term Memory in Drosophila
PLoS ONE, 8(12), e83903.
Ed(s): E. Skoulakis
MeSH headings : Animals; Drosophila Proteins / biosynthesis; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster; Gene Expression Regulation, Enzymologic / physiology; Gene Knockdown Techniques; Histone Deacetylases / biosynthesis; Histone Deacetylases / genetics; Memory, Long-Term / physiology; Mushroom Bodies / cytology; Mushroom Bodies / enzymology; Myogenic Regulatory Factors / genetics; Myogenic Regulatory Factors / metabolism
TL;DR:
It is shown that overexpression of HDAC4 in the adult mushroom body resulted in a specific impairment in long-term courtship memory, but had no affect on short-term memory, suggesting that the repressive effects ofHDAC4 on long- term memory may be through interaction with MEF2.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018
2013 journal article
Improving lactose digestion and symptoms of lactose intolerance with a novel galacto-oligosaccharide (RP-G28): a randomized, double-blind clinical trial
NUTRITION JOURNAL, 12.
author keywords: Lactose intolerance; Colonic adaptation; Galacto-oligosaccharides; GOS; Hydrogen breath test; RP-G28; Microbiome; Microflora
MeSH headings : Abdominal Pain / epidemiology; Abdominal Pain / etiology; Abdominal Pain / prevention & control; Adult; Colon / microbiology; Dairy Products / adverse effects; Digestion; Double-Blind Method; Female; Follow-Up Studies; Gastrointestinal Agents / administration & dosage; Gastrointestinal Agents / adverse effects; Gastrointestinal Agents / therapeutic use; Humans; Incidence; Intestinal Mucosa / microbiology; Lactase / deficiency; Lactose / metabolism; Lactose Intolerance / diet therapy; Lactose Intolerance / microbiology; Lactose Intolerance / physiopathology; Male; Oligosaccharides / administration & dosage; Oligosaccharides / adverse effects; Oligosaccharides / therapeutic use; Prebiotics / adverse effects; Prebiotics / analysis; Severity of Illness Index; Trisaccharides / administration & dosage; Trisaccharides / adverse effects; Trisaccharides / therapeutic use; United States / epidemiology
TL;DR:
RP-G28 appears to be a potentially useful approach for improving lactose digestion and LI symptoms and the concurrent reduction in abdominal pain and improved overall tolerance could be a meaningful benefit to lactose intolerant individuals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM
MICROBIOLOGY-SGM, 159, 2269–2282.
MeSH headings : Animals; Cells, Cultured; Chromatography, Liquid; Dendritic Cells / drug effects; Lactobacillus acidophilus / chemistry; Lactobacillus acidophilus / immunology; Mass Spectrometry; Membrane Glycoproteins / analysis; Membrane Glycoproteins / immunology; Mice; Tumor Necrosis Factor-alpha / metabolism
TL;DR:
P phenotypic characterization of the deletion mutant demonstrated that the SLAP LBA1029 contributes to a pro-inflammatory TNF-α response from murine DCs, and appears to impart important surface display features and immunological properties to microbes that are coated by S-layers.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
De novo Sequencing, Characterization, and Comparison of Inflorescence Transcriptomes of Cornus canadensis and C. florida (Cornaceae)
PLOS ONE, 8(12).
Contributors: J. Zhang n, R. Franks n , X. Liu n, M. Kang *, J. Keebler n, J. Schaff n, H. Huang *, Q. Xiang n
MeSH headings : Chromosome Mapping; Cornus / genetics; Cornus / growth & development; DNA, Complementary / chemistry; Flowers / genetics; Flowers / growth & development; Gene Library; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Transcriptome
TL;DR:
The study identified putative candidates potentially involved in the genetic regulation of inflorescence evolution and/or disease resistance in dogwoods for future analyses, and built a preliminary source of genome sequence data.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2013 journal article
Comprehensive genotyping of the USA national maize inbred seed bank
GENOME BIOLOGY, 14(6).
author keywords: Diversity; Genotyping by sequencing; Germplasm; Maize; Public
MeSH headings : Alleles; Biological Specimen Banks; Breeding; Chromosome Mapping; Genetic Markers; Genome, Plant; Genotype; High-Throughput Nucleotide Sequencing; Linkage Disequilibrium; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable; Seeds / classification; Seeds / genetics; United States; Zea mays / genetics
TL;DR:
Genotyping by sequencing, a new low-cost, high-throughput sequencing technology was used to genotype 2,815 maize inbred accessions, preserved mostly at the National Plant Germplasm System in the USA, and identified trait associations at SNPs very close to known candidate genes for kernel color, sweet corn, and flowering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity
NATURE COMMUNICATIONS, 4.
Contributors: S. Pietra *, A. Gustavsson*, C. Kiefer*, L. Kalmbach *, P. Hörstedt*, Y. Ikeda *, A. Stepanova n , J. Alonso n, M. Grebe *
MeSH headings : Alleles; Amino Acid Sequence; Arabidopsis / cytology; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Cell Division / physiology; Cell Polarity / physiology; Chromosomes, Plant; Gene Expression Regulation, Plant / physiology; Intracellular Signaling Peptides and Proteins / genetics; Intracellular Signaling Peptides and Proteins / metabolism; Microtubule-Associated Proteins / genetics; Microtubule-Associated Proteins / metabolism; Phylogeny
TL;DR:
It is demonstrated in Arabidopsis thaliana that the SABRE protein is important for mediating cell and planar polarity by stabilizing the orientation of microtubules during cell division and cell elongation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Probiotics, prebiotics, and the host microbiome: the science of translation
ANNALS REPORTS, 1306, 1–17.
author keywords: microbiome; probiotics; prebiotics; intestinal microbiota; health disorders
MeSH headings : Cognition; Congresses as Topic; Depression / therapy; Diabetes Mellitus / therapy; Humans; Intestines / microbiology; Lactose Intolerance / therapy; Mental Health; Microbiota; Obesity / therapy; Prebiotics / microbiology; Probiotics / therapeutic use; Translational Research, Biomedical
TL;DR:
A group of experts recently met to review the latest advances in microbiota/microbiome research and discuss the implications for development of probiotics and prebiotics, primarily as they relate to effects mediated via the intestine.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Pleiotropic Effects of the Trichloroethylene-Associated P81S VHL Mutation on Metabolism, Apoptosis, and ATM-Mediated DNA Damage Response
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 105(18), 1355–1364.
MeSH headings : Animals; Apoptosis; Arginine; Ataxia Telangiectasia Mutated Proteins; Carcinoma, Renal Cell / genetics; Carcinoma, Renal Cell / metabolism; Cell Cycle Proteins / metabolism; DNA Damage; DNA-Binding Proteins / metabolism; Embryonic Stem Cells; Glutamine; Humans; Hypoxia-Inducible Factor 1 / metabolism; Immunohistochemistry; Kidney Neoplasms / genetics; Kidney Neoplasms / metabolism; Mice; Occupational Exposure; Point Mutation; Proline; Protein Array Analysis; Protein Serine-Threonine Kinases / metabolism; Serine; Teratoma / genetics; Trichloroethylene / toxicity; Tumor Suppressor Proteins / metabolism; Ubiquitin-Protein Ligases / metabolism; Von Hippel-Lindau Tumor Suppressor Protein / genetics
TL;DR:
The TCE-associated P81S VHL mutation can initiate a unique adaptive response required for selective tumor growth through pleiotropic effects on metabolic diversification, apoptosis suppression, and alteration of the DNA damage response.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Molecular Mechanisms of EthyleneAuxin Interaction
MOLECULAR PLANT, 6(6), 1734–1737.
Contributors: L. Robles n, A. Stepanova n & J. Alonso n
MeSH headings : Ethylenes / metabolism; Indoleacetic Acids / metabolism; Plant Growth Regulators / metabolism; RNA Processing, Post-Transcriptional; Transcription, Genetic
TL;DR:
This work has uncovered how these molecules are sensed by the plant cell and how they trigger signaling cascades that relay information to the nucleus, ultimately culminating in a transcriptional cascade.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos
CURRENT BIOLOGY, 23(24), 2506–2512.
Contributors: H. Robert *, P. Grones *, A. Stepanova n , L. Robles n, A. Lokerse*, J. Alonso n, D. Weijers *, J. Friml *
MeSH headings : Arabidopsis / embryology; Arabidopsis Proteins / metabolism; Body Patterning / drug effects; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Membrane Transport Proteins / metabolism; Plant Growth Regulators / metabolism; Plant Growth Regulators / pharmacology; Plant Growth Regulators / physiology; Protein Transport; Seeds / drug effects; Seeds / growth & development
TL;DR:
The tight spatiotemporal control of distinct local auxin sources provides a necessary, non-cell-autonomous trigger for the coordinated cell polarization and subsequent apical-basal axis orientation during embryogenesis and, presumably, also for other polarization events during postembryonic plant life.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 review
Ethylene signaling: simple ligand, complex regulation
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.
Contributors: C. Merchante n, J. Alonso n & A. Stepanova n
MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Ethylenes / metabolism; Gene Expression Regulation, Plant; Gene Regulatory Networks; Models, Biological; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Receptors, Cell Surface / genetics; Receptors, Cell Surface / metabolism; Signal Transduction
TL;DR:
This review describes the most current outlook on ethylene signal transduction and emphasizes the latest discoveries in the ethylene field that shed light on the mechanistic mode of action of the central pathway components CTR1 and EIN2, as well as on the post-transcriptional regulatory steps that modulate the signaling flow through the pathway.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
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