Works Published in 2013

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Displaying works 1 - 20 of 52 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2013 journal article

Sex determination mechanisms in the Calliphoridae (blow flies)

Sexual Development, 8(1-3), 29–37.

By: M. Scott, M. Pimsler & A. Tarone

Source: ORCID
Added: January 29, 2024

2013 journal article

Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response    

Plant Physiology, 162(1), 212–224.

By: K. Hill*, D. Mathews*, H. Kim*, I. Street*, S. Wildes*, Y. Chiang*, M. Mason*, J. Alonso* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytokinins / metabolism; Gene Expression Regulation, Plant; Multigene Family; Mutagenesis, Insertional; Phenotype; Plant Growth Regulators / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; RNA, Plant / genetics; Regulatory Sequences, Nucleic Acid; Seedlings / genetics; Seedlings / growth & development; Seedlings / metabolism; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism; Transgenes
Sources: Crossref, ORCID
Added: October 9, 2021

2013 journal article

A method for detecting hidden additivity in two-factor unreplicated experiments

Computational Statistics & Data Analysis, 67, 95–104.

co-author countries: United States of America 🇺🇸
author keywords: Interaction effects; Latent variables; Non-additivity
Sources: Crossref, ORCID
Added: September 5, 2020

2013 conference paper

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.

By: K. Merchante n, Q. Hu n, A. Stepanova n, J. Eonso & S. Heber n

co-author countries: United States of America 🇺🇸

Contributors: K. Merchante n, Q. Hu n, A. Stepanova n, J. Eonso & S. Heber n

Source: ORCID
Added: December 19, 2019

2013 journal article

Molecular mechanisms of ethylene–auxin interactions

Molecular Plant, sst113.

By: L. Robles, A. Stepanova & J. Alonso

Contributors: L. Robles, A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2013 journal article

Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification

Cancer Informatics, 12, CIN.S10212.

By: L. Huang n, H. Zhang n, Z. Zeng n & P. Bushel n

co-author countries: United States of America 🇺🇸
author keywords: support vector machine (SVM); multi-class SVM; variable selection; shrinkage methods; classification; microarray; cancer classification
Source: Crossref
Added: July 20, 2019

2013 journal article

Characterization of the sequence and expression pattern of LFY homologues from dogwood species (Cornus) with divergent inflorescence architectures

Annals of Botany, 112(8), 1629–1641.

By: J. Liu n, R. Franks n, C. Feng n, X. Liu, C. Fu* & Q. Xiang n

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: J. Liu n, R. Franks n, C. Feng n, X. Liu, C. Fu* & Q. Xiang n

author keywords: Cornus; dogwood; inflorescence evolution; LFY homologues; CorLFY expression; RTPCR; in situ hybridization
MeSH headings : Amino Acid Sequence; Base Sequence; Cornus / anatomy & histology; Cornus / genetics; Cornus / growth & development; Exons / genetics; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; In Situ Hybridization; Inflorescence / anatomy & histology; Inflorescence / genetics; Inflorescence / growth & development; Molecular Sequence Data; Phylogeny; Plant Proteins / chemistry; Plant Proteins / genetics; Plant Proteins / metabolism; Sequence Homology, Amino Acid
Source: ORCID
Added: January 22, 2019

2013 review

Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria

[Review of ]. FRONTIERS IN MICROBIOLOGY, 4.

By: E. Call & T. Klaenhammer*

author keywords: probiotic; sortase; sortase-dependent protein; LPXTG; lactic acid bacteria; lactobacillus; lactococcus
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Identification of a Novel Polymorphism in X-Linked Sterol-4-Alpha-Carboxylate 3-Dehydrogenase (Nsdhl) Associated with Reduced High-Density Lipoprotein Cholesterol Levels in I/LnJ Mice

G3-GENES GENOMES GENETICS, 3(10), 1819–1825.

co-author countries: United States of America 🇺🇸
author keywords: QTL; genomics; HDL cholesterol; Nsdhl
MeSH headings : 3-Hydroxysteroid Dehydrogenases / genetics; Animals; Animals, Inbred Strains; Apolipoprotein A-II / genetics; Cholesterol, HDL / blood; Cholesterol, HDL / genetics; Genetic Linkage; Lipid Metabolism / genetics; Mice; Polymorphism, Single Nucleotide; Quantitative Trait Loci; X Chromosome / genetics
Source: Web Of Science
Added: August 6, 2018

2013 journal article

The Histone Deacetylase HDAC4 Regulates Long-Term Memory in Drosophila

PLoS ONE, 8(12), e83903.

By: H. Fitzsimons*, S. Schwartz*, F. Given* & M. Scott n

co-author countries: New Zealand 🇳🇿 United States of America 🇺🇸

Ed(s): E. Skoulakis

MeSH headings : Animals; Drosophila Proteins / biosynthesis; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster; Gene Expression Regulation, Enzymologic / physiology; Gene Knockdown Techniques; Histone Deacetylases / biosynthesis; Histone Deacetylases / genetics; Memory, Long-Term / physiology; Mushroom Bodies / cytology; Mushroom Bodies / enzymology; Myogenic Regulatory Factors / genetics; Myogenic Regulatory Factors / metabolism
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018

2013 journal article

Improving lactose digestion and symptoms of lactose intolerance with a novel galacto-oligosaccharide (RP-G28): a randomized, double-blind clinical trial

NUTRITION JOURNAL, 12.

By: D. Savaiano*, A. Ritter, T. Klaenhammer n, G. James*, A. Longcore, J. Chandler, W. Walker*, H. Foyt

co-author countries: United States of America 🇺🇸
author keywords: Lactose intolerance; Colonic adaptation; Galacto-oligosaccharides; GOS; Hydrogen breath test; RP-G28; Microbiome; Microflora
MeSH headings : Abdominal Pain / epidemiology; Abdominal Pain / etiology; Abdominal Pain / prevention & control; Adult; Colon / microbiology; Dairy Products / adverse effects; Digestion; Double-Blind Method; Female; Follow-Up Studies; Gastrointestinal Agents / administration & dosage; Gastrointestinal Agents / adverse effects; Gastrointestinal Agents / therapeutic use; Humans; Incidence; Intestinal Mucosa / microbiology; Lactase / deficiency; Lactose / metabolism; Lactose Intolerance / diet therapy; Lactose Intolerance / microbiology; Lactose Intolerance / physiopathology; Male; Oligosaccharides / administration & dosage; Oligosaccharides / adverse effects; Oligosaccharides / therapeutic use; Prebiotics / adverse effects; Prebiotics / analysis; Severity of Illness Index; Trisaccharides / administration & dosage; Trisaccharides / adverse effects; Trisaccharides / therapeutic use; United States / epidemiology
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM

MICROBIOLOGY-SGM, 159, 2269–2282.

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Cells, Cultured; Chromatography, Liquid; Dendritic Cells / drug effects; Lactobacillus acidophilus / chemistry; Lactobacillus acidophilus / immunology; Mass Spectrometry; Membrane Glycoproteins / analysis; Membrane Glycoproteins / immunology; Mice; Tumor Necrosis Factor-alpha / metabolism
Source: Web Of Science
Added: August 6, 2018

2013 journal article

De novo Sequencing, Characterization, and Comparison of Inflorescence Transcriptomes of Cornus canadensis and C. florida (Cornaceae)

PLOS ONE, 8(12).

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: J. Zhang n, R. Franks n, X. Liu n, M. Kang*, J. Keebler n, J. Schaff n, H. Huang*, Q. Xiang n

MeSH headings : Chromosome Mapping; Cornus / genetics; Cornus / growth & development; DNA, Complementary / chemistry; Flowers / genetics; Flowers / growth & development; Gene Library; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Transcriptome
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Comprehensive genotyping of the USA national maize inbred seed bank

GENOME BIOLOGY, 14(6).

By: M. Romay*, M. Millard*, J. Glaubitz*, J. Peiffer n, K. Swarts*, T. Casstevens*, R. Elshire*, C. Acharya* ...

co-author countries: United States of America 🇺🇸
author keywords: Diversity; Genotyping by sequencing; Germplasm; Maize; Public
MeSH headings : Alleles; Biological Specimen Banks; Breeding; Chromosome Mapping; Genetic Markers; Genome, Plant; Genotype; High-Throughput Nucleotide Sequencing; Linkage Disequilibrium; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable; Seeds / classification; Seeds / genetics; United States; Zea mays / genetics
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

NATURE COMMUNICATIONS, 4.

By: S. Pietra*, A. Gustavsson*, C. Kiefer*, L. Kalmbach*, P. Horstedt*, Y. Ikeda*, A. Stepanova n, J. Alonso n, M. Grebe*

co-author countries: Switzerland 🇨🇭 Czechia 🇨🇿 Sweden 🇸🇪 United States of America 🇺🇸

Contributors: S. Pietra*, A. Gustavsson*, C. Kiefer*, L. Kalmbach*, P. Hörstedt*, Y. Ikeda*, A. Stepanova n, J. Alonso n, M. Grebe*

MeSH headings : Alleles; Amino Acid Sequence; Arabidopsis / cytology; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Cell Division / physiology; Cell Polarity / physiology; Chromosomes, Plant; Gene Expression Regulation, Plant / physiology; Intracellular Signaling Peptides and Proteins / genetics; Intracellular Signaling Peptides and Proteins / metabolism; Microtubule-Associated Proteins / genetics; Microtubule-Associated Proteins / metabolism; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Probiotics, prebiotics, and the host microbiome: the science of translation

ANNALS REPORTS, 1306, 1–17.

By: B. Petschow*, J. Dore*, P. Hibberd*, T. Dinan*, G. Reid*, M. Blaser*, P. Cani*, F. Degnan* ...

co-author countries: Belgium 🇧🇪 Canada 🇨🇦 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Ireland 🇮🇪 Netherlands 🇳🇱 United States of America 🇺🇸
author keywords: microbiome; probiotics; prebiotics; intestinal microbiota; health disorders
MeSH headings : Cognition; Congresses as Topic; Depression / therapy; Diabetes Mellitus / therapy; Humans; Intestines / microbiology; Lactose Intolerance / therapy; Mental Health; Microbiota; Obesity / therapy; Prebiotics / microbiology; Probiotics / therapeutic use; Translational Research, Biomedical
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Pleiotropic Effects of the Trichloroethylene-Associated P81S VHL Mutation on Metabolism, Apoptosis, and ATM-Mediated DNA Damage Response

JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 105(18), 1355–1364.

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Apoptosis; Arginine; Ataxia Telangiectasia Mutated Proteins; Carcinoma, Renal Cell / genetics; Carcinoma, Renal Cell / metabolism; Cell Cycle Proteins / metabolism; DNA Damage; DNA-Binding Proteins / metabolism; Embryonic Stem Cells; Glutamine; Humans; Hypoxia-Inducible Factor 1 / metabolism; Immunohistochemistry; Kidney Neoplasms / genetics; Kidney Neoplasms / metabolism; Mice; Occupational Exposure; Point Mutation; Proline; Protein Array Analysis; Protein Serine-Threonine Kinases / metabolism; Serine; Teratoma / genetics; Trichloroethylene / toxicity; Tumor Suppressor Proteins / metabolism; Ubiquitin-Protein Ligases / metabolism; Von Hippel-Lindau Tumor Suppressor Protein / genetics
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Molecular Mechanisms of EthyleneAuxin Interaction

MOLECULAR PLANT, 6(6), 1734–1737.

co-author countries: United States of America 🇺🇸

Contributors: L. Robles n, A. Stepanova n & J. Alonso n

MeSH headings : Ethylenes / metabolism; Indoleacetic Acids / metabolism; Plant Growth Regulators / metabolism; RNA Processing, Post-Transcriptional; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos

CURRENT BIOLOGY, 23(24), 2506–2512.

co-author countries: Austria 🇦🇹 Belgium 🇧🇪 Czechia 🇨🇿 Netherlands 🇳🇱 United States of America 🇺🇸
MeSH headings : Arabidopsis / embryology; Arabidopsis Proteins / metabolism; Body Patterning / drug effects; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Membrane Transport Proteins / metabolism; Plant Growth Regulators / metabolism; Plant Growth Regulators / pharmacology; Plant Growth Regulators / physiology; Protein Transport; Seeds / drug effects; Seeds / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 review

Ethylene signaling: simple ligand, complex regulation

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Ethylenes / metabolism; Gene Expression Regulation, Plant; Gene Regulatory Networks; Models, Biological; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Receptors, Cell Surface / genetics; Receptors, Cell Surface / metabolism; Signal Transduction
Sources: Web Of Science, ORCID
Added: August 6, 2018

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