Molecular Education, Technology and Research Innovation Center - 2011

Enders, J. R., Marasco, C., Goodwin, C., May, J., Seale, K., Wikswo, J., & McLean, J. A. (2011). A Microfluidic-Ion Mobility-Mass Spectrometry Platform for Presymptomatic Diagnoses of CBW Agent Exposure. Presented at the 2011 Chemical and Biological Defense Science and Technology Conference, Las Vegas, NV.

Enders, J. R., Marasco, C., Goodwin, C., May, J., Seale, K., Wikswo, J., & McLean, J. A. (2011). Development of a Platform for Online Acquisition of Empirical Systems Biology Data. Presented at the 5th Annual Conference on Cellular Information Processing (q-bio), Santa Fe, NM.

Enders, J. R., Marasco, C., Goodwin, C., May, J., Seale, K., Wikswo, J., & McLean, J. A. (2011). Microfluidic-Coupled Ion Mobility-Mass Spectrometry Platform for Real-Time, Temporally-Resolved Analysis of Excreted Cellular Materials. Presented at the 59th American Society for Mass Spectrometry Annual Conference, Denver, CO.

Swarup, S., Williams, T. I., & Anholt, R. R. H. (2011). Behavioral Response Profiles of Odorant Binding Proteins in Drosophila melanogaster. Presented at the 6th Annual North Carolina State University Graduate Student Research Symposium, Raleigh, NC.

Mutlu, E., Collins, L., Stout, M., Upton, P., Daye, L., Winsett, D., … Swenberg, J. (2011, June). Pseudo-SRM Conditions Improve Detection of N 2,3-ethenoguanine in DNA. Poster presented at the 59th American Society for Mass Spectrometry Conference, Denver, CO.

Ito, S., Shen, L., Dai, Q., Wu, S. C., Collins, L. B., Swenberg, J. A., … Zhang, Y. (2011). Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine. Science, 333(6047), 1300–1303. https://doi.org/10.1126/science.1210597

King, C. L., Ramachandran, S., Chaney, S. G., Collins, L., Swenberg, J. A., deKrafft, K. E., … Barbier, M. (2011). Debio 0507 primarily forms diaminocyclohexane-Pt-d(GpG) and -d(ApG) DNA adducts in HCT116 cells. Cancer Chemotherapy and Pharmacology, 69(3), 665–677. https://doi.org/10.1007/s00280-011-1744-3

Williams, T. I., Swarup, S., Zhou, S., & Anholt, R. R. H. (2011). Proteomics of Olfaction: Identification and Relative Quantification of Odorant Binding Proteins in the Antennae of Drosophila melanogaster. Presented at the American Society for Mass Spectrometry, Denver, CO.

Swarup, S., Williams, T. I., & Anholt, R. R. H. (2011). Functional Dissection of Odorant Binding Protein Genes in Drosophila melanogaster. Presented at the Center for Integrative Genomics (CIG) Symposium, Université de Lausanne, Lausanne, Switzerland.

Bereman, M. S., & Muddiman, D. C. (2011). N-Linked Global Glycan Profiling by NanoLC Mass Spectrometry. In Methods in Molecular Biology (pp. 87–97). https://doi.org/10.1007/978-1-61779-319-6_7

Enders, J. R., Goodwin, C. R., Marasco, C. C., Seale, K. T., Wikswo, J. P., & McLean, J. A. (2011). Advanced Structural Mass Spectrometry for Systems Biology: Pulling the Needles from Haystacks. Current Trends in Mass Spectrometry, 9(3), 18–23.

Willis, M. N., Liu, Y., Biterova, E. I., Simpson, M. A., Kim, H., Lee, J., & Barycki, J. J. (2011). Enzymatic Defects Underlying Hereditary Glutamate Cysteine Ligase Deficiency Are Mitigated by Association of the Catalytic and Regulatory Subunits. Biochemistry, 50(29), 6508–6517. https://doi.org/10.1021/bi200708w

Samy El-Shall, M., & Muddiman, D. C. (2011). Foreword. International Journal of Mass Spectrometry, 300(2-3), 72–73. https://doi.org/10.1016/j.ijms.2010.11.015

Enders, J. R., Kliman, M., Sundarapandian, S., & Mclean, J. A. (2011). Peptide and Protein Analysis Using Ion Mobility-Mass Spectrometry. In Protein and Peptide Mass Spectrometry in Drug Discovery (pp. 139–174). https://doi.org/10.1002/9781118116555.ch6

Chen, H.-C., Li, Q., Shuford, C. M., Liu, J., Muddiman, D. C., Sederoff, R. R., & Chiang, V. L. (2011). Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258. https://doi.org/10.1073/pnas.1116416109

Barry, J. A., & Muddiman, D. C. (2011). Global optimization of the infrared matrix-assisted laser desorption electrospray ionization (IR MALDESI) source for mass spectrometry using statistical design of experiments. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 25(23), 3527–3536. https://doi.org/10.1002/rcm.5262

Gokce, E., Shuford, C. M., Franck, W. L., Dean, R. A., & Muddiman, D. C. (2011). Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(12), 2199–2208. https://doi.org/10.1007/s13361-011-0237-2

Blake, S. L., Walker, S. H., Muddiman, D. C., Hinks, D., & Beck, K. R. (2011). Spectral Accuracy and Sulfur Counting Capabilities of the LTQ-FT-ICR and the LTQ-Orbitrap XL for Small Molecule Analysis. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(12), 2269–2275. https://doi.org/10.1007/s13361-011-0244-3

Dixon, R. B., Bereman, M. S., Petitte, J. N., Hawkridge, A. M., & Muddiman, D. C. (2011). One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 305(2-3), 79–86. https://doi.org/10.1016/j.ijms.2010.05.023

Walker, S. H., Budhathoki-Uprety, J., Novak, B. M., & Muddiman, D. C. (2011). Stable-Isotope Labeled Hydrophobic Hydrazide Reagents for the Relative Quantification of N-Linked Glycans by Electrospray Ionization Mass Spectrometry. ANALYTICAL CHEMISTRY, 83(17), 6738–6745. https://doi.org/10.1021/ac201376q

Collier, T. S., Randall, S. M., Sarkar, P., Rao, B. M., Dean, R. A., & Muddiman, D. C. (2011). Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 25(17), 2524–2532. https://doi.org/10.1002/rcm.5151

Gokce, E., Andrews, G. L., Dean, R. A., & Muddiman, D. C. (2011). Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 879(9-10), 610–614. https://doi.org/10.1016/j.jchromb.2011.01.032

Andrews, G. L., Dean, R. A., Hawkridge, A. M., & Muddiman, D. C. (2011). Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(4), 773–783. https://doi.org/10.1007/s13361-011-0075-2

Chang, K. Y., & Muddiman, D. C. (2011). Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms. BMC Genomics, 12.

Walker, S. H., Lilley, L. M., Enamorado, M. F., Comins, D. L., & Muddiman, D. C. (2011). Hydrophobic Derivatization of N-linked Glycans for Increased Ion Abundance in Electrospray Ionization Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(8), 1309–1317. https://doi.org/10.1007/s13361-011-0140-x

Zhao, G.-Z., Li, Q.-J., Chen, L.-J., Tan, H., Wang, C.-H., Lehman, D. A., … Yang, H.-B. (2011). Facile Self-Assembly of Supramolecular Hexakisferrocenyl Triangles via Coordination-Driven Self-Assembly and Their Electrochemical Behavior. ORGANOMETALLICS, 30(13), 3637–3642. https://doi.org/10.1021/om2003305

Shuford, C. M., & Muddiman, D. C. (2011). [Review of Capitalizing on the hydrophobic bias of electrospray ionization through chemical modification in mass spectrometry-based proteomics]. EXPERT REVIEW OF PROTEOMICS, 8(3), 317–323. https://doi.org/10.1586/epr.11.24

El-Shall, M. S., & Muddiman, D. C. (2011). John B. Fenn special issue recognizing the science of Professor John B. Fenn foreword. International Journal of Mass Spectrometry, 300(2-3), 72–73.

Swarup, S., Williams, T. I., & Anholt, R. R. H. (2011). Functional dissection of Odorant binding protein genes in Drosophila melanogaster. GENES BRAIN AND BEHAVIOR, 10(6), 648–657. https://doi.org/10.1111/j.1601-183x.2011.00704.x

Robichaud, G., Dixon, R. B., Potturi, A. S., Cassidy, D., Edwards, J. R., Sohn, A., … Muddiman, D. C. (2011). Design, modeling, fabrication, and evaluation of the air amplifier for improved detection of biomolecules by electrospray ionization mass spectrometry. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 300(2-3), 99–107. https://doi.org/10.1016/j.ijms.2010.04.006

Andrews, G. L., Simons, B. L., Young, J. B., Hawkridge, A. M., & Muddiman, D. C. (2011). Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600). ANALYTICAL CHEMISTRY, 83(13), 5442–5446. https://doi.org/10.1021/ac200812d

Muddiman, D. C. (2011, January 14). John Bennett Fenn (1917-2010). SCIENCE, Vol. 331, pp. 160–160. https://doi.org/10.1126/science.1201766

Walters, J., Swartz, P., Mattos, C., & Clark, A. C. (2011). Thermodynamic, enzymatic and structural effects of removing a salt bridge at the base of loop 4 in (pro)caspase-3. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 508(1), 31–38. https://doi.org/10.1016/j.abb.2011.01.011