Molecular Education, Technology and Research Innovation Center - 2022

Bai, H., Collins, L. B., André, M. R., Breitschwerdt, E. B., & Williams, T. I. (2022). A bottom-up proteomics workflow for a system containing multiple organisms. Rapid Communications in Mass Spectrometry. https://doi.org/10.1002/rcm.9431

Peptidomic analysis of mycobacterial secreted proteins enables species identification. (2022). View. https://doi.org/10.1002/VIW.20210019

MS-based Detection of Pathogen Antigen Through Immunoprecipitation of Its Proteolytic Peptides. (2022). Molecular & Cellular Proteomics. https://doi.org/10.1016/J.MCPRO.2022.100460

Nanopore-based disease diagnosis using pathogen-derived tryptic peptides from serum. (2022). Nano Today. https://doi.org/10.1016/J.NANTOD.2022.101515

Assay design for unambiguous identification and quantification of circulating pathogen-derived peptide biomarkers. (2022). Theranostics. https://doi.org/10.7150/THNO.70373

Mellinger, A. L., Kibbe, R. R., Rabbani, Z. N., Meritet, D., Muddiman, D. C., & Gamcsik, M. P. (2022). Mapping glycine uptake and its metabolic conversion to glutathione in mouse mammary tumors using functional mass spectrometry imaging. FREE RADICAL BIOLOGY AND MEDICINE, 193, 677–684. https://doi.org/10.1016/j.freeradbiomed.2022.11.010

Knizner, K. T., Kibbe, R. R., Garrard, K. P., Nunez, J. R., Anderton, C. R., & Muddiman, D. C. (2022). On the importance of color in mass spectrometry imaging. JOURNAL OF MASS SPECTROMETRY, 57(12). https://doi.org/10.1002/jms.4898

Sohn, A. L., Ping, L., Glass, J. D., Seyfried, N. T., Hector, E. C., & Muddiman, D. C. (2022). Interrogating the Metabolomic Profile of Amyotrophic Lateral Sclerosis in the Post-Mortem Human Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Mass Spectrometry Imaging (MSI). METABOLITES, 12(11). https://doi.org/10.3390/metabo12111096

Biehl, A., Martins, A. M. G. M., Davis, Z. G. G., Sze, D., Collins, L., Mora-Navarro, C., … Freytes, D. O. O. (2022, December 12). Towards a standardized multi-tissue decellularization protocol for the derivation of extracellular matrix materials. BIOMATERIALS SCIENCE, Vol. 12. https://doi.org/10.1039/d2bm01012g

Durmusoglu, D., Al’Abri, I., Williams, T. I., Collins, L. B., Martínez, J. L., & Crook, N. (2022, December 31). Improving Therapeutic Protein Secretion in the Probiotic YeastSaccharomyces boulardiiusing a Multifactorial Engineering Approach. BioRxiv. https://doi.org/10.1101/2022.12.30.522352

Venkatraman, V., Filiano, A. J., Xu, L., Collins, L., Luo, E., Ripple, K. M., … Bedlack, R. S. (2022). Filtered Cerebrospinal Fluid From Patients With Amyotrophic Lateral Sclerosis Displays an Altered Proteome and Affects Motor Phenotype in a Mouse Model. Cureus, 12. https://doi.org/10.7759/cureus.32980

Han, S.-D., Sommer, R. D., Boyle, P. D., Zhou, Z.-B., Young, V. G., Borodin, O., & Henderson, W. A. (2022). Electrolyte Solvation and Ionic Association: Part IX. Structures and Raman Spectroscopic Characterization of LiFSI Solvates. JOURNAL OF THE ELECTROCHEMICAL SOCIETY, 169(11). https://doi.org/10.1149/1945-7111/ac9a07

Yun, S.-H., Han, S.-D., Borodin, O., Seo, D. M., Afroz, T., Sommer, R. D., & Henderson, W. A. (2022). Solvate Structures and Computational/Spectroscopic Characterization of LiCF3SO3 Electrolytes. JOURNAL OF PHYSICAL CHEMISTRY C, 126(43), 18251–18265. https://doi.org/10.1021/acs.jpcc.2c06170

Doyle, M. G., Odenkirk, M. T., Stewart, A. K., Nelson, J. P., Baker, E. S., & Cruz, F. (2022, November 1). Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems. ACS ES&T WATER. https://doi.org/10.1021/acsestwater.2c00320

Weed, R. A., Boatman, A. K., & Enders, J. R. (2022, October 14). Recovery of per- and polyfluoroalkyl substances after solvent evaporation. ENVIRONMENTAL SCIENCE-PROCESSES & IMPACTS, Vol. 10. https://doi.org/10.1039/D2EM00269H

Joignant, A. N., Bai, H., Manni, J. G., Sr., & Muddiman, D. C. (2022). Improved spatial resolution of infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging using a reflective objective. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(23). https://doi.org/10.1002/rcm.9392

Knizner, K. T., Guymon, J. P., Garrard, K. P., Bouvree, G., Manni, J., Hauschild, J.-P., … Muddiman, D. C. (2022, September 29). Next-Generation Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Source for Mass Spectrometry Imaging and High-Throughput Screening. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 9. https://doi.org/10.1021/jasms.2c00178

Joignant, A. N., Bai, H., Guymon, J. P., Garrard, K. P., Pankow, M., & Muddiman, D. C. (2022). Developing transmission mode for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(22). https://doi.org/10.1002/rcm.9386

Manley, O. M., Phan, H. N., Stewart, A. K., Mosley, D. A., Xue, S., Cha, L., … Makris, T. M. (2022). Self-sacrificial tyrosine cleavage by an Fe:Mn oxygenase for the biosynthesis of para-aminobenzoate in Chlamydia trachomatis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(39). https://doi.org/10.1073/pnas.2210908119

Krakkó, D., Illés, Á., Domján, A., Demeter, A., Dóbé, S., & Záray, G. (2022). UV and (V)UV irradiation of sitagliptin in ultrapure water and WWTP effluent: Kinetics, transformation products and degradation pathway. Chemosphere, 288, 132393. https://doi.org/10.1016/j.chemosphere.2021.132393

Sorption of selected pharmaceuticals on river benthic biofilms formed on artificial substrata. (2022). Ecological Indicators, 138, 108837. https://doi.org/10.1016/j.ecolind.2022.108837

Krakkó, D., Heieren, B. T., Illés, Á., Kvamme, K., Dóbé, S., & Záray, G. (2022). (V)UV degradation of the antibiotic tetracycline: Kinetics, transformation products and pathway. Process Safety and Environmental Protection, 163, 395–404. https://doi.org/10.1016/j.psep.2022.05.027

Kibbe, R. R., Mellinger, A. L., & Muddiman, D. C. (2022). Novel matrix strategies for improved ionization and spatial resolution using IR-MALDESI mass spectrometry imaging. JOURNAL OF MASS SPECTROMETRY, 57(8). https://doi.org/10.1002/jms.4875

Wu, Y., Wong, C. W., Chiles, E. N., Mellinger, A. L., Bae, H., Jung, S., … Shen, X. (2022). Glycerate from intestinal fructose metabolism induces islet cell damage and glucose intolerance. CELL METABOLISM, 34(7), 1042-+. https://doi.org/10.1016/j.cmet.2022.05.007

Barnes, A. C., Rodriguez-Zapata, F., Juarez-Nunez, K. A., Gates, D. J., Janzen, G. M., Kur, A., … Rellan-Alvarez, R. (2022). An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(27). https://doi.org/10.1073/pnas.2100036119

Duan, L., Scheidemantle, G., Lodge, M., Cummings, M. J., Pham, E., Wang, X., … Liu, X. (2022). Prioritize biologically relevant ions for data-independent acquisition (BRI-DIA) in LC-MS/MS-based lipidomics analysis. METABOLOMICS, 18(8). https://doi.org/10.1007/s11306-022-01913-8

Duan, L., Cooper, D. E., Scheidemantle, G., Locasale, J. W., Kirsch, D. G., & Liu, X. (2022). C-13 tracer analysis suggests extensive recycling of endogenous CO2 in vivo. CANCER & METABOLISM, 10(1). https://doi.org/10.1186/s40170-022-00287-8

Mellinger, A. L., Muddiman, D. C., & Gamcsik, M. P. (2022, June 27). Highlighting Functional Mass Spectrometry Imaging Methods in Bioanalysis. JOURNAL OF PROTEOME RESEARCH, Vol. 6. https://doi.org/10.1021/acs.jproteome.2c00220

Zimmer, B. M., Barycki, J. J., & Simpson, M. A. (2022). [Review of Mechanisms of coordinating hyaluronan and glycosaminoglycan production by nucleotide sugars]. AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY, 322(6), C1201–C1213. https://doi.org/10.1152/ajpcell.00130.2022

Knizner, K. T., Bagley, M. C., Pu, F., Elsen, N. L., Williams, J. D., & Muddiman, D. C. (2022). Normalization techniques for high-throughput screening by infrared matrix-assisted laser desorption electrospray ionization mass spectrometry. JOURNAL OF MASS SPECTROMETRY, 57(6). https://doi.org/10.1002/jms.4869

Pace, C. L., Simmons, J., Kelly, R. T., & Muddiman, D. C. (2022). Multimodal Mass Spectrometry Imaging of Rat Brain Using IR-MALDESI and NanoPOTS-LC-MS/MS. JOURNAL OF PROTEOME RESEARCH, 21(3), 713–720. https://doi.org/10.1021/acs.jproteome.1c00641

Mellinger, A. L., Garrard, K. P., Khodjaniyazova, S., Rabbani, Z. N., Gamcsik, M. P., & Muddiman, D. C. (2022). Multiple Infusion Start Time Mass Spectrometry Imaging of Dynamic SIL-Glutathione Biosynthesis Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization. JOURNAL OF PROTEOME RESEARCH, 21(3), 747–757. https://doi.org/10.1021/acs.jproteome.1c00636

Sripada, S. A., Chu, W., Williams, T. I., Teten, M. A., Mosley, B. J., Carbonell, R. G., … Menegatti, S. (2022, April 22). Towards continuous mAb purification: Clearance of host cell proteins from CHO cell culture harvests via "flow-through affinity chromatography" using peptide-based adsorbents. BIOTECHNOLOGY AND BIOENGINEERING, Vol. 119. https://doi.org/10.1002/bit.28096

Enders, J. R., Weed, R. A., Griffith, E. H., & Muddiman, D. C. (2022). Development and validation of a high resolving power absolute quantitative per- and polyfluoroalkyl substances method incorporating Skyline data processing. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(11). https://doi.org/10.1002/rcm.9295

Knizner, K. T., Bagley, M. C., Garrard, K. P., Hauschild, J.-P., Pu, F., Elsen, N. L., … Muddiman, D. C. (2022). Optimized C-Trap Timing of an Orbitrap 240 Mass Spectrometer for High-Throughput Screening and Native MS by IR-MALDESI. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33(2), 328–334. https://doi.org/10.1021/jasms.1c00319

Pace, C. L., Angel, P. M., Drake, R. R., & Muddiman, D. C. (2022). Mass Spectrometry Imaging of N-Linked Glycans in a Formalin-Fixed Paraffin-Embedded Human Prostate by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization. JOURNAL OF PROTEOME RESEARCH, 21(1), 243–249. https://doi.org/10.1021/acs.jproteome.1c00822

Muthusamy, N., Williams, T. I., O'Toole, R., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain. GEROSCIENCE, Vol. 1. https://doi.org/10.1007/s11357-022-00517-3

Andre, M. R., Neupane, P., Lappin, M., Herrin, B., Smith, V., Williams, T. I., … Breitschwerdt, E. B. (2022). Using Proteomic Approaches to Unravel the Response of Ctenocephalides felis felis to Blood Feeding and Infection With Bartonella henselae. FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 12. https://doi.org/10.3389/fcimb.2022.828082

Mora-Navarro, C., Garcia, M. E., Sarker, P., Ozpinar, E. W., Enders, J. R., Khan, S., … Freytes, D. O. (2022). Monitoring decellularization via absorbance spectroscopy during the derivation of extracellular matrix scaffolds. BIOMEDICAL MATERIALS, 17(1). https://doi.org/10.1088/1748-605X/ac361f