Center for Environmental and Health Effects of PFAS - 2013

Kennedy, A., Reinert, A., Knappe, D., & Summers, R. S. (2013). Understanding and predicting the adsorption of trace organic micropollutants by granular activated carbon. 2013 Water Quality Technology Conference and Exposition, WQTC 2013. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-84890451391&partnerID=MN8TOARS

Kempisty, D. M., Summers, R. S., & Knappe, D. (2013). The effect of background matrix and competition of GAC Adsorption of Carcinogenic VOCs in Natural Waters. 2013 Water Quality Technology Conference and Exposition, WQTC 2013. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-84890544639&partnerID=MN8TOARS

Kullman, S. (2013). A Set of Scientific Issues Being Considered by the Environmental Protection Agency Regarding: Proposed Endocrine Disruptor Screening Program (EDSP) Tier 2 Ecotoxicity Tests (SAP Minutes No. 2013-04). Environmental Protection Agency.

Barlaz, M. A. (2013). Solid Waste Engineering: Test Tubes, Landfills and Models. Invited Lecture presented at the Tonji University, Chongqing University, Tsinghua University, China.

Barlaz, M. A., Levis, J., DeCarolis, J., & Ranjithan, S. R. (2013). What is the Optimal Way for a Suburban U.S. City to Sustainably Manage Future Solid Waste? Perspectives from a Solid Waste Optimization Life-cycle Framework (SWOLF). Presented at the Fourteenth International Waste Management and Landfill Symposium, Cagliari, Italy.

Barlaz, M. A. (2013). Modernizing Models and Data on Methane Production from U.S. Municipal Solid Waste. Presented at the Engineering Society of Detroit 23rd Annual Solid Waste Technical Conference, Detroit, MI.

Dunn, S. E., & Knappe, D. R. U. (2013). DBP Precursor and Micropollutant Removal by Powdered Activated Carbon (Executive Summary No. 4294). Denver, Colorado: Water Research Foundation.

Thigpen, J. E., Setchell, K. D. R., Kissling, G. E., Locklear, J., Caviness, G. F., Whiteside, T., … Grant, M. (2013). The estrogenic content of rodent diets, bedding, cages, and water bottles and its effect on bisphenol a studies. Journal of the American Association for Laboratory Animal Science, 52(2), 130–141. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-84875526300&partnerID=MN8TOARS

Franck, W. L., Gokce, E., Oh, Y., Muddiman, D. C., & Dean, R. A. (2013). Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation. Molecular & Cellular Proteomics, 12(8), 2249–2265. https://doi.org/10.1074/MCP.M112.025874

Patisaul, H. B., Roberts, S. C., Mabrey, N., McCaffrey, K. A., Gear, R. B., Braun, J., … Stapleton, H. M. (2013). Accumulation and Endocrine Disrupting Effects of the Flame Retardant Mixture Firemaster® 550 in Rats: An Exploratory Assessment. Journal of Biochemical and Molecular Toxicology, 27(2), 124–136. https://doi.org/10.1002/jbt.21439

Low, Y., Sedykh, A., Fourches, D., Golbraikh, A., Whelan, M., Rusyn, I., & Tropsha, A. (2013). Integrative Chemical–Biological Read-Across Approach for Chemical Hazard Classification. Chemical Research in Toxicology, 26(8), 1199–1208. https://doi.org/10.1021/TX400110F

Fourches, D., Muratov, E., Ding, F., Dokholyan, N. V., & Tropsha, A. (2013). Predicting Binding Affinity of CSAR Ligands Using Both Structure-Based and Ligand-Based Approaches. Journal of Chemical Information and Modeling, 53(8), 1915–1922. https://doi.org/10.1021/CI400216Q

Zhang, L., Fourches, D., Sedykh, A., Zhu, H., Golbraikh, A., Ekins, S., … Tropsha, A. (2013). Discovery of Novel Antimalarial Compounds Enabled by QSAR-Based Virtual Screening. Journal of Chemical Information and Modeling, 53(2), 475–492. https://doi.org/10.1021/ci300421n

Fourches, D., & Tropsha, A. (2013). Using Graph Indices for the Analysis and Comparison of Chemical Datasets. Molecular Informatics, 32(9-10), 827–842. https://doi.org/10.1002/MINF.201300076

Díaz-Jaramillo, M., da Rocha, A. M., Chiang, G., Buchwalter, D., Monserrat, J. M., & Barra, R. (2013). Biochemical and behavioral responses in the estuarine polychaete Perinereis gualpensis (Nereididae) after in situ exposure to polluted sediments. Ecotoxicology and Environmental Safety, 89, 182–188. https://doi.org/10.1016/j.ecoenv.2012.11.026

Jasper, M. N., Mahinthakumar, G. (K., Ranjithan, S. (R., & Brill, E. D. (2013). Leak Detection in Water Distribution Systems Using the Dividing Rectangles (DIRECT) Search. World Environmental and Water Resources Congress 2013. Presented at the World Environmental and Water Resources Congress 2013. https://doi.org/10.1061/9780784412947.078

Jasper, M. N., Mahinthakumar, G. (K., Ranjithan, S. (R., & Brill, E. D. (2013). A Sensitivity Analysis of Data Measurement Types for Leak Detection in Water Distribution Systems. World Environmental and Water Resources Congress 2013. Presented at the World Environmental and Water Resources Congress 2013. https://doi.org/10.1061/9780784412947.059

Hoppin, J. A. (2013). Pesticides and respiratory health: where do we go from here? Occupational and Environmental Medicine, 71(2), 80–80. https://doi.org/10.1136/oemed-2013-101876

Henneberger, P. K., Liang, X., London, S. J., Umbach, D. M., Sandler, D. P., & Hoppin, J. A. (2013). Exacerbation of symptoms in agricultural pesticide applicators with asthma. International Archives of Occupational and Environmental Health, 87(4), 423–432. https://doi.org/10.1007/s00420-013-0881-x

Venceslau, S. S., Cort, J. R., Baker, E. S., Chu, R. K., Robinson, E. W., Dahl, C., … Pereira, I. A. C. (2013). Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction. Biochemical and Biophysical Research Communications, 441(4), 732–736. https://doi.org/10.1016/j.bbrc.2013.10.116

Crowell, K. L., Slysz, G. W., Baker, E. S., LaMarche, B. L., Monroe, M. E., Ibrahim, Y. M., … Smith, R. D. (2013). LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets. Bioinformatics, 29(21), 2804–2805. https://doi.org/10.1093/bioinformatics/btt465

Merkley, E. D., Baker, E. S., Crowell, K. L., Orton, D. J., Taverner, T., Ansong, C., … Adkins, J. N. (2013). Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein-Protein Interactions by Chemical Cross-Linking. Journal of the American Society For Mass Spectrometry, 24(3), 444–449. https://doi.org/10.1007/s13361-012-0565-x

Crowell, K. L., Baker, E. S., Payne, S. H., Ibrahim, Y. M., Monroe, M. E., Slysz, G. W., … Smith, R. D. (2013). Increasing confidence of LC-MS identifications by utilizing ion mobility spectrometry. International Journal of Mass Spectrometry, 354, 312–317. https://doi.org/10.1016/j.ijms.2013.06.028

Merkley, E. D., Baker, E. S., Crowell, K. L., Orton, D. J., Taverner, T., Ansong, C., … Adkins, J. N. (2013). Combining heavy isotope labeling, chemical cross-linking, ion mobility spectrometry, and mass spectrometry to study the structure of homomultimeric protein complexes. Abstracts of Papers of the American Chemical Society, 246. Retrieved from http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000329618401034&KeyUID=WOS:000329618401034

Koutros, S., Beane Freeman, L. E., Lubin, J. H., Heltshe, S. L., Andreotti, G., Barry, K. H., … Alavanja, M. C. R. (2013). Risk of total and aggressive prostate cancer and pesticide use in the Agricultural Health Study. American Journal of Epidemiology, 177(1), 59–74. https://doi.org/10.1093/aje/kws225

Waggoner, J. K., Henneberger, P. K., Kullman, G. J., Umbach, D. M., Kamel, F., Beane Freeman, L. E., … Hoppin, J. A. (2013). Pesticide use and fatal injury among farmers in the Agricultural Health Study. International Archives of Occupational and Environmental Health, 86(2), 177–187. https://doi.org/10.1007/s00420-012-0752-x

Bertelsen, R. J., Carlsen, K. C. L., Calafat, A. M., Hoppin, J. A., Håland, G., Mowinckel, P., … Løvik, M. (2013). Urinary Biomarkers for Phthalates Associated with Asthma in Norwegian Children. Environmental Health Perspectives, 121(2), 251–256. https://doi.org/10.1289/ehp.1205256

Hou, L., Andreotti, G., Baccarelli, A. A., Savage, S., Hoppin, J. A., Sandler, D. P., … Alavanja, M. C. (2013). Lifetime Pesticide Use and Telomere Shortening among Male Pesticide Applicators in the Agricultural Health Study. Environmental Health Perspectives, 121(8), 919–924. https://doi.org/10.1289/ehp.1206432

Karami, S., Andreotti, G., Koutros, S., Barry, K. H., Moore, L. E., Han, S., … Alavanja, M. C. R. (2013). Pesticide Exposure and Inherited Variants in Vitamin D Pathway Genes in Relation to Prostate Cancer. Cancer Epidemiology Biomarkers & Prevention, 22(9), 1557–1566. https://doi.org/10.1158/1055-9965.EPI-12-1454

Safaeian, M., Rajaraman, P., Hartge, P., Yeager, M., Linet, M., Butler, M. A., … Wang, S. S. (2013). Joint effects between five identified risk variants, allergy, and autoimmune conditions on glioma risk. Cancer Causes & Control, 24(10), 1885–1891. https://doi.org/10.1007/s10552-013-0244-7

Beard, J. D., Hoppin, J. A., Richards, M., Alavanja, M. C. R., Blair, A., Sandler, D. P., & Kamel, F. (2013). Pesticide exposure and self-reported incident depression among wives in the Agricultural Health Study. Environmental Research, 126, 31–42. https://doi.org/10.1016/j.envres.2013.06.001

Longnecker, M. P., Harbak, K., Kissling, G. E., Hoppin, J. A., Eggesbo, M., Jusko, T. A., … Koch, H. M. (2013). The concentration of bisphenol A in urine is affected by specimen collection, a preservative, and handling. Environmental Research, 126, 211–214. https://doi.org/10.1016/j.envres.2013.07.002

Goldner, W. S., Sandler, D. P., Yu, F., Shostrom, V., Hoppin, J. A., Kamel, F., & LeVan, T. D. (2013). Hypothyroidism and Pesticide Use Among Male Private Pesticide Applicators in the Agricultural Health Study. Journal of Occupational and Environmental Medicine, 55(10), 1171–1178. https://doi.org/10.1097/JOM.0b013e31829b290b

Hoppin, J. A., Jaramillo, R., London, S. J., Bertelsen, R. J., Salo, P. M., Sandler, D. P., & Zeldin, D. C. (2013). Phthalate Exposure and Allergy in the U.S. Population: Results from NHANES 2005–2006. Environmental Health Perspectives, 121(10), 1129–1134. https://doi.org/10.1289/ehp.1206211

Brantsæter, A. L., Whitworth, K. W., Ydersbond, T. A., Haug, L. S., Haugen, M., Knutsen, H. K., … Longnecker, M. P. (2013). Determinants of plasma concentrations of perfluoroalkyl substances in pregnant Norwegian women. Environment International, 54, 74–84. https://doi.org/10.1016/j.envint.2012.12.014

Koutros, S., Berndt, S. I., Hughes Barry, K., Andreotti, G., Hoppin, J. A., Sandler, D. P., … Beane Freeman, L. E. (2013). Genetic Susceptibility Loci, Pesticide Exposure and Prostate Cancer Risk. PLoS ONE, 8(4), e58195. https://doi.org/10.1371/journal.pone.0058195

Kim, N. H., Mason, C. C., Nelson, R. G., Afton, S. E., Essader, A. S., Medlin, J. E., … Sandler, D. P. (2013). Arsenic Exposure and Incidence of Type 2 Diabetes in Southwestern American Indians. American Journal of Epidemiology, 177(9), 962–969. https://doi.org/10.1093/aje/kws329

Rinsky, J. L., Hoppin, J. A., Blair, A., He, K., Beane Freeman, L. E., & Chen, H. (2013). Agricultural Exposures and Stroke Mortality in the Agricultural Health Study. Journal of Toxicology and Environmental Health, Part A, 76(13), 798–814. https://doi.org/10.1080/15287394.2013.819308

Wang, Y., Starling, A. P., Haug, L. S., Eggesbo, M., Becher, G., Thomsen, C., … Longnecker, M. P. (2013). Association between Perfluoroalkyl substances and thyroid stimulating hormone among pregnant women: a cross-sectional study. Environmental Health, 12(1). https://doi.org/10.1186/1476-069X-12-76

Sofer, T., Schifano, E. D., Hoppin, J. A., Hou, L., & Baccarelli, A. A. (2013). A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure. Bioinformatics, 29(22), 2884–2891. https://doi.org/10.1093/bioinformatics/btt498

Stebbing, R. E., Irvin, S. C., Rivera-Serrano, E. E., Boehme, K. W., Ikizler, M., Yoder, J. A., … Lyles, D. S. (2013). An ITAM in a Nonenveloped Virus Regulates Activation of NF- B, Induction of Beta Interferon, and Viral Spread. Journal of Virology, 88(5), 2572–2583. https://doi.org/10.1128/jvi.02573-13

Rotroff, D. M., Dix, D. J., Houck, K. A., Knudsen, T. B., Martin, M. T., McLaurin, K. W., … Judson, R. S. (2013). Using in vitro high throughput screening assays to identify potential endocrine-disrupting chemicals. Environmental Health Perspectives, 121(1), 7–14. https://doi.org/10.1289/ehp.1205065

Reif, D. M., Sypa, M., Lock, E. F., Wright, F. A., Wilson, A., Cathey, T., … Bioinformatics. (2013). ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence. Bioinformatics, 29(3), 402–403. https://doi.org/10.1093/bioinformatics/bts686

Rotroff, D. M., Dix, D. J., Houck, K. A., Kavlock, R. J., Knudsen, T. B., Martin, M. T., … Judson, R. S. (2013). Real-time growth kinetics measuring hormone mimicry for ToxCast chemicals in T-47D human ductal carcinoma cells. Chemical Research in Toxicology, 26(7), 1097–1107. https://doi.org/10.1021/tx400117y

Judson, R., Kavlock, R., Martin, M., Reif, D., Houck, K., Knudsen, T., … Dix, D. (2013). Perspectives on validation of high-throughput assays supporting 21st century toxicity testing. Altex, 30(1), 51–66. Retrieved from http://europepmc.org/abstract/med/23338806

Kleinstreuer, N. C., Dix, D. J., Houck, K. A., Kavlock, R. J., Knudsen, T. B., Martin, M. T., … Judson, R. S. (2013). In vitro perturbations of targets in cancer hallmark processes predict rodent chemical carcinogenesis. Toxicological Sciences, 131(1), 40–55. https://doi.org/10.1093/toxsci/kfs285

Williams-DeVane, C. R., Reif, D. M., Cohen Hubal, E., Bushel, P. R., Hudgens, E. E., Gallagher, J. E., & Edwards, S. W. (2013). Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes. BMC Systems Biology, 7, 119. https://doi.org/10.1186/1752-0509-7-119

Motsinger-Reif, A. A., Zhu, H., Kling, M. A., Matson, W., Sharma, S., Fiehn, O., … Arnold, S. E. (2013). Comparing metabolomic and pathologic biomarkers alone and in combination for discriminating Alzheimer’s disease from normal cognitive aging. Acta Neuropathologica Communications, 1(1), 28. https://doi.org/10.1186/2051-5960-1-28

Houck, K. A., Richard, A. M., Judson, R. S., Martin, M. T., Reif, D. M., & Shah, I. (2013, February). ToxCast: Predicting Toxicity Potential Through High-Throughput Bioactivity Profiling. High-Throughput Screening Methods in Toxicity Testing, Vol. 2, p. 1–31. https://doi.org/10.1002/9781118538203.ch1

Sipes, N. S., Martin, M. T., Kothiya, P., Reif, D. M., Judson, R. S., Richard, A. M., … Knudsen, T. B. (2013). Profiling 976 ToxCast Chemicals across 331 Enzymatic and Receptor Signaling Assays. Chem. Res. Toxicol., 26(6), 878–895. https://doi.org/10.1021/tx400021f

Ducharme, N. A., Peterson, L. E., Benfenati, E., Reif, D., McCollum, C. W., JÅ, G., & Bondesson, M. (2013). Meta-analysis of toxicity and teratogenicity of 133 chemicals from zebrafish developmental toxicity studies. Reproductive Toxicology, 41, 98–108. https://doi.org/10.1016/j.reprotox.2013.06.070

Wambaugh, J. F., Setzer, R. W., Reif, D. M., Gangwal, S., Mitchell-Blackwood, J., Arnot, J. A., … E.A. (2013). High-throughput models for exposure-based chemical prioritization in the ExpoCast project. Environmental Science and Technology, 47(15), 8479–8488. https://doi.org/10.1021/es400482g

Wambaugh, J. F., Setzer, R. W., Pitruzzello, A. M., Liu, J., Reif, D. M., Kleinstreuer, N. C., … Lau, C. (2013). Dosimetric anchoring of in vivo and in vitro studies for perfluorooctanoate and perfluorooctanesulfonate. Toxicological Sciences, 136(2), 308–327. https://doi.org/10.1093/toxsci/kft204

Kleinstreuer, N., Dix, D., Rountree, M., Baker, N., Sipes, N., Reif, D., … Knudsen, T. (2013). A Computational Model Predicting Disruption of Blood Vessel Development. PLoS Comput Biol, 9(4), e1002996. https://doi.org/10.1371/journal.pcbi.1002996

Dirscherl, H., & Yoder, J. A. (2013). Characterization of the Z lineage Major histocompatability complex class I genes in zebrafish. Immunogenetics, 66(3), 185–198. https://doi.org/10.1007/s00251-013-0748-z

Kunz, J. L., Conley, J. M., Buchwalter, D. B., Norberg-King, T. J., Kemble, N. E., Wang, N., & Ingersoll, C. G. (2013). USE OF RECONSTITUTED WATERS TO EVALUATE EFFECTS OF ELEVATED MAJOR IONS ASSOCIATED WITH MOUNTAINTOP COAL MINING ON FRESHWATER INVERTEBRATES. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 32(12), 2826–2835. https://doi.org/10.1002/etc.2391

Wettere, A. J. V., Kullmam, S., Hinton, D. E., & Law, J. M. (2013). Immunohistochemical characterization of the hepatic progenitor cell compartment in medaka (oryzias latipes) following hepatic injury. Journal of Comparative Pathology, 149(4), 434–445. https://doi.org/10.1016/j.jcpa.2013.03.008

Loziuk, P. L., Wang, J., Li, Q., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2013). Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments. JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829. https://doi.org/10.1021/pr4008442

Yost, E. E., Meyer, M. T., Dietze, J. E., Meissner, B. M., Worley-Davis, L., Williams, C. M., … Kullman, S. W. (2013). Comprehensive Assessment of Hormones, Phytoestrogens, and Estrogenic Activity in an Anaerobic Swine Waste Lagoon. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 47(23), 13781–13790. https://doi.org/10.1021/es4026408

Levis, J. W., Barlaz, M. A., DeCarolis, J. F., & Ranjithan, S. R. (2013). A generalized multistage optimization modeling framework for life cycle assessment-based integrated solid waste management. ENVIRONMENTAL MODELLING & SOFTWARE, 50, 51–65. https://doi.org/10.1016/j.envsoft.2013.08.007

Cai, X., Vogel, R., & Ranjithan, R. (2013, September). Special Issue on the Role of Systems Analysis in Watershed Management. JOURNAL OF WATER RESOURCES PLANNING AND MANAGEMENT, Vol. 139, pp. 461–463. https://doi.org/10.1061/(asce)wr.1943-5452.0000341

Wang, X., Padgett, J. M., Powell, J. S., & Barlaz, M. A. (2013). Decomposition of forest products buried in landfills. WASTE MANAGEMENT, 33(11), 2267–2276. https://doi.org/10.1016/j.wasman.2013.07.009

Davis, A. P., Wiegers, T. C., Roberts, P. M., King, B. L., Lay, J. M., Lennon-Hopkins, K., … Mattingly, C. J. (2013). A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION. https://doi.org/10.1093/database/bat080

Abichou, T., Barlaz, M. A., Green, R., & Hater, G. (2013). The Outer Loop bioreactor: A case study of settlement monitoring and solids decomposition. WASTE MANAGEMENT, 33(10), 2035–2047. https://doi.org/10.1016/j.wasman.2013.02.005

Cruz, F. B., Chanton, J. P., & Barlaz, M. A. (2013). Measurement of carbon storage in landfills from the biogenic carbon content of excavated waste samples. WASTE MANAGEMENT, 33(10), 2001–2005. https://doi.org/10.1016/j.wasman.2012.12.012

Barry, J. A., Robichaud, G., & Muddiman, D. C. (2013). Mass Recalibration of FT-ICR Mass Spectrometry Imaging Data Using the Average Frequency Shift of Ambient Ions. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(7), 1137–1145. https://doi.org/10.1007/s13361-013-0659-0

Abichou, T., Barlaz, M. A., Green, R., & Hater, G. (2013). Liquid balance monitoring inside conventional, Retrofit, and bio-reactor landfill cells. WASTE MANAGEMENT, 33(10), 2006–2014. https://doi.org/10.1016/j.wasman.2013.05.023

Planchart, A. (2013). Analysis of an intronic promoter within Synj2. Biochemical and Biophysical Research Communications, 440(4), 640–645. https://doi.org/10.1016/j.bbrc.2013.09.115

Gabor, K. A., Stevens, C. R., Pietraszewski, M. J., Gould, T. J., Shim, J., Yoder, J., … al. (2013). Super Resolution Microscopy Reveals that Caveolin-1 Is Required for Spatial Organization of CRFB1 and Subsequent Antiviral Signaling in Zebrafish. PLoS ONE, 8(7), e68759. https://doi.org/10.1371/journal.pone.0068759

Walker, S. H., Taylor, A. D., & Muddiman, D. C. (2013). Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT): A Novel Glycan-Relative Quantification Strategy. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(9), 1376–1384. https://doi.org/10.1007/s13361-013-0681-2

Randall, S. M., Cardasis, H. L., & Muddiman, D. C. (2013). Factorial Experimental Designs Elucidate Significant Variables Affecting Data Acquisition on a Quadrupole Orbitrap Mass Spectrometer. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(10), 1501–1512. https://doi.org/10.1007/s13361-013-0693-y

Van Wettere, A. J., Law, J. M., Hinton, D. E., & Kullman, S. W. (2013). Anchoring Hepatic Gene Expression with Development of Fibrosis and Neoplasia in a Toxicant-induced Fish Model of Liver Injury. TOXICOLOGIC PATHOLOGY, 41(5), 744–760. https://doi.org/10.1177/0192623312464308

Poteat, M. D., Garland, T., Jr., Fisher, N. S., Wang, W.-X., & Buchwalter, D. B. (2013). Evolutionary Patterns in Trace Metal (Cd and Zn) Efflux Capacity in Aquatic Organisms. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 47(14), 7989–7995. https://doi.org/10.1021/es401368u

Jung, Y., Mahinthakumar, G., & Ranjithan, R. (2013). Development of a simultaneous search-based pilot point method for subsurface characterization. STOCHASTIC ENVIRONMENTAL RESEARCH AND RISK ASSESSMENT, 27(8), 2003–2013. https://doi.org/10.1007/s00477-013-0734-x

Conley, J. M., Funk, D. H., Hesterberg, D. H., Hsu, L.-C., Kan, J., Liu, Y.-T., & Buchwalter, D. B. (2013). Bioconcentration and Biotransformation of Selenite versus Selenate Exposed Periphyton and Subsequent Toxicity to the Mayfly Centroptilum triangulifer. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 47(14), 7965–7973. https://doi.org/10.1021/es400643x

Shi, R., Shuford, C. M., Wang, J. P., Sun, Y. H., Yang, Z. C., Chen, H. C., … Chiang, V. L. (2013). Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa. Planta, 238(3), 487–497. https://doi.org/10.1007/s00425-013-1905-1

Kingon, G. L. A., Petitte, J. N., Muddiman, D. C., & Hawkridge, A. M. (2013). Multi-peptide nLC-PC-IDMS-SRM-based Assay for the quantification of biomarkers in the chicken ovarian cancer model. METHODS, 61(3), 323–330. https://doi.org/10.1016/j.ymeth.2013.04.004

Balhoff, J. P., Miko, I., Yoder, M. J., Mullins, P. L., & Deans, A. R. (2013). A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia. SYSTEMATIC BIOLOGY, 62(5), 639–659. https://doi.org/10.1093/sysbio/syt028

White, B. L., Goekce, E., Nepomuceno, A. I., Muddiman, D. C., Sanders, T. H., & Davis, J. P. (2013). Comparative Proteomic Analysis and IgE Binding Properties of Peanut Seed and Testa (Skin). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 61(16), 3957–3968. https://doi.org/10.1021/jf400184y

Wang, X. M., Nagpure, A. S., DeCarolis, J. F., & Barlaz, M. (2013). Using observed data to improve estimated methane collection from select US landfills. Environmental Science & Technology, 47(7), 3251–3257. https://doi.org/10.1021/es304565m

Chen, H.-C., Song, J., Williams, C. M., Shuford, C. M., Liu, J., Wang, J. P., … Chiang, V. L. (2013). Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes. PLANT PHYSIOLOGY, 161(3), 1501–1516. https://doi.org/10.1104/pp.112.210971

Cochran, K. H., Barry, J. A., Muddiman, D. C., & Hinks, D. (2013). Direct Analysis of Textile Fabrics and Dyes Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry. ANALYTICAL CHEMISTRY, 85(2), 831–836. https://doi.org/10.1021/ac302519n

Walker, S. H., Taylor, A. D., & Muddiman, D. (2013). The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability. Rapid Communications in Mass Spectrometry, 27(12), 1354–1358. https://doi.org/10.1002/rcm.6579

Kovalova, L., Knappe, D. R. U., Lehnberg, K., Kazner, C., & Hollender, J. (2013). Removal of highly polar micropollutants from wastewater by powdered activated carbon. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 20(6), 3607–3615. https://doi.org/10.1007/s11356-012-1432-9

Wang, H., Sankarasubramanian, A., & Ranjithan, R. S. (2013). Integration of Climate and Weather Information for Improving 15-Day-Ahead Accumulated Precipitation Forecasts. JOURNAL OF HYDROMETEOROLOGY, 14(1), 186–202. https://doi.org/10.1175/jhm-d-11-0128.1

Robichaud, G., Barry, J. A., Garrard, K. P., & Muddiman, D. C. (2013). Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Imaging Source Coupled to a FT-ICR Mass Spectrometer. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(1), 92–100. https://doi.org/10.1007/s13361-012-0505-9

Davis, A. P., Wiegers, T. C., Johnson, R. J., Lay, J. M., Lennon-Hopkins, K., Saraceni-Richards, C., … Mattingly, C. J. (2013). Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database. PLOS ONE, 8(4). https://doi.org/10.1371/journal.pone.0058201

Robichaud, G., Garrard, K. P., Barry, J. A., & Muddiman, D. C. (2013). MSiReader: An Open-Source Interface to View and Analyze High Resolving Power MS Imaging Files on Matlab Platform. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(5), 718–721. https://doi.org/10.1007/s13361-013-0607-z

Li, J., D’Annibale-Tolhurst, M. A., Adler, K. B., Fang, S., Yin, Q., Birkenheuer, A. J., … Nordone, S. K. (2013). A Myristoylated Alanine-Rich C Kinase Substrate–Related Peptide Suppresses Cytokine mRNA and Protein Expression in LPS-Activated Canine Neutrophils. American Journal of Respiratory Cell and Molecular Biology, 48(3), 314–321. https://doi.org/10.1165/rcmb.2012-0278oc

Chen, Y., Knappe, D. R. U., & Barlaz, M. A. (2013). The effect of aging on the bioavailability of toluene sorbed to municipal solid waste components. CHEMOSPHERE, 90(2), 251–259. https://doi.org/10.1016/j.chemosphere.2012.06.062