Genetics and Genomics Initiative - 2010

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010). Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2 (vol 398, pg 377, 2010). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1837–1837. https://doi.org/10.1007/s00216-010-4102-0

Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010). Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting (vol 398, pg 391, 2010). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1839–1839. https://doi.org/10.1007/s00216-010-4050-8

Ashwell, M. S., Ceddia, R. P., House, R. L., Cassady, J. P., Eisen, E. J., Eling, T. E., … Odle, J. (2010). Trans-10, cis-12-conjugated linoleic acid alters hepatic gene expression in a polygenic obese line of mice displaying hepatic lipidosis. Journal of Nutritional Biochemistry, 21(9), 848–855. https://doi.org/10.1016/j.jnutbio.2009.06.013

Cheng, Y., Kim, J. W., Lee, S., Siletzky, R. M., & Kathariou, S. (2010). DNA Probes for unambiguous identification of Listeria monocytogenes epidemic clone II strains. Applied and Environmental Microbiology, 76(9), 3061–3068. https://doi.org/10.1128/aem.03064-09

Cowger, C., & Arellano, C. (2010). Plump kernels with high Deoxynivalenol linked to late Gibberella zeae infection and marginal disease conditions in winter wheat. Phytopathology, 100(7), 719–728. https://doi.org/10.1094/phyto-100-7-0719

Delport, W., Scheffler, K., Gravenor, M. B., Muse, S. V., & Pond, S. K. (2010). Benchmarking multi-rate codon models. PLoS One, 5(7).

Duffy, T. A., Picha, M. E., Won, E. T., Borski, R. J., McElroy, A. E., & Conover, D. O. (2010). Ontogenesis of gonadal aromatase gene expression in Atlantic silverside (Menidia menidia) populations with genetic and temperature-dependent sex determination. Journal of Experimental Zoology. Part A, Ecological Genetics and Physiology, 313A(7), 421–431. https://doi.org/10.1002/jez.612

Guedira, M., Brown-Guedira, G., Sanford, D. V., Sneller, C., Souza, E., & Marshall, D. (2010). Distribution of Rht genes in modern and historic winter wheat cultivars from the eastern and central USA. Crop Science, 50(5), 1811–1822. https://doi.org/10.2135/cropsci2009.10.0626

Guo, L., Zhu, X.-Q., Hu, C.-H., & Ristaino, J. (2010). Genetic structure of Phytophthora infestans populations in China indicates multiple migration events. Phytopathology, 100(10), 997–1006. https://doi.org/10.1094/phyto-05-09-0126

Lee, T.-J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., … Thompson, W. F. (2010). Arabidopsis thaliana chromosome 4 replicates in two phases that correlate with chromatin state. PLoS Genetics, 6(6), e1000982. https://doi.org/10.1371/journal.pgen.1000982

Mbeunkui, F., Scholl, E. H., Opperman, C. H., Goshe, M. B., & Bird, D. M. K. (2010). Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism. Journal of Proteome Research, 9(10), 5370–5381. https://doi.org/10.1021/pr1006069

McCann, J. J., Choi, U. B., Zheng, L. Q., keith, & Bowen, M. E. (2010). Optimizing methods to recover absolute FRET efficiency from immobilized single molecules. Biophysical Journal, 99(3), 961–970. https://doi.org/10.1016/j.bpj.2010.04.063

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010). Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2. Analytical and Bioanalytical Chemistry, 398(1), 377–389. https://doi.org/10.1007/s00216-010-3955-6

Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010). Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting. Analytical and Bioanalytical Chemistry, 398(1), 391–404. https://doi.org/10.1007/s00216-010-3929-8

Olson, E. L., Brown-Guedira, G., Marshall, D., Stack, E., Bowden, R. L., Jin, Y., … Pumphrey, M. O. (2010). Development of wheat lines having a small introgressed segment carrying stem rust resistance gene Sr22. Crop Science, 50(5), 1823–1830. https://doi.org/10.2135/cropsci2009.11.0652

Pongpanich, M., Sullivan, P. F., & Tzeng, J. Y. (2010). A quality control algorithm for filtering SNPs in genome-wide association studies. Bioinformatics, 26(14), 1731–1737. https://doi.org/10.1093/bioinformatics/btq272

Ponnusamy, L., Xu, N., Böröczky, K., Wesson, D. M., Abu Ayyash, L., Schal, C., & Apperson, C. S. (2010). Oviposition Responses of the Mosquitoes Aedes aegypti and Aedes albopictus to Experimental Plant Infusions in Laboratory Bioassays. Journal of Chemical Ecology, 36(7), 709–719. https://doi.org/10.1007/s10886-010-9806-2

Tetteh, A. Y., Wehner, T., & Davis, A. R. (2010). Identifying resistance to powdery mildew race 2W in the USDA-ARS watermelon germplasm collection. Crop Science, 50(3), 933–939. https://doi.org/10.2135/cropsci2009.03.0135

Whetten, R. W., & Kellison, R. (2010). [Review of Research gap analysis for application of biotechnology to sustaining US forests]. Journal of Forestry, 108(4), 193–201.

Xu, C., Legros, M., Gould, F., & Lloyd, A. L. (2010). Understanding Uncertainties in Model-Based Predictions of Aedes aegypti Population Dynamics. PLoS Neglected Tropical Diseases, 4(9), e830. https://doi.org/10.1371/journal.pntd.0000830