Works Published in 2013
Displaying works 201 - 220 of 660 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2013 journal article
The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity
PLoS Genetics, 9(3), e1003312.
Ed(s): D. Hughes
MeSH headings : Bacteriophages / genetics; Bacteriophages / immunology; Base Sequence; Biological Evolution; DNA, Intergenic / genetics; Genetics, Population; Immunity / genetics; Interspersed Repetitive Sequences / genetics; Models, Theoretical; Molecular Sequence Data; Mutation; Sequence Analysis, DNA; Streptococcus thermophilus / genetics; Streptococcus thermophilus / immunology; Streptococcus thermophilus / virology
TL;DR:
It is postulated that the invasion of phage into populations of BIMs resistant by the acquisition of one (but not two) spacers and the establishment of a BIM–CEM arms race than predicted from existing assumptions about phage infection and CRISPR–cas immunity can be attributed to the phages infection-associated production of enzymes or other compounds.
(via Semantic Scholar)
journals.plos.org (publisher PDF)
Source: ORCID
Added: January 2, 2020
2013 journal article
Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14
Genome Announcements, 1(3), e00376–13-e00376–13.
TL;DR:
Globally, 111 single nucleotide polymorphisms (SNPs) were observed throughout the genome of Lactobacillus acidophilus strain La-14 and a 416-bp deletion in the LA14_1146 sugar ABC transporter was identified.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: January 2, 2020
2013 journal article
Strong bias in the bacterial CRISPR elements that confer immunity to phage
Nature Communications, 4, 1430.
MeSH headings : Autoimmunity / genetics; Bacteriophages / physiology; Biological Evolution; DNA, Intergenic / genetics; Genetic Loci / genetics; Genome, Viral / genetics; High-Throughput Nucleotide Sequencing; Host-Pathogen Interactions / genetics; Immunity / genetics; Inverted Repeat Sequences / genetics; Open Reading Frames / genetics; Polymorphism, Single Nucleotide / genetics; Streptococcus thermophilus / genetics; Streptococcus thermophilus / immunology; Streptococcus thermophilus / virology
TL;DR:
A strong and reproducible bias in the phage genome locations from which spacers derive is detected, suggesting selection for specific spacers based on location and effectiveness in CRISPR–Cas systems.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2013 journal article
RNA-guided genome editing à la carte
Cell Research, 23(6), 733–734.
MeSH headings : CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; DNA Restriction Enzymes; Endonucleases; Genetic Engineering; Humans; Plasmids / genetics; RNA / genetics; RNA / metabolism; RNA Editing / genetics; RNA, Guide, Kinetoplastida / genetics; RNA, Small Interfering / genetics; Viruses / genetics
TL;DR:
Two recent papers in Science illustrate how the prokaryotic CRISPR-Cas immune system machinery, which typically targets invasive genetic elements such as viruses and plasmids, can be converted into a sophisticated molecular tool for next-generation human genome editing.
(via Semantic Scholar)
Source: ORCID
Added: January 2, 2020
2013 journal article
Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity
Applied and Environmental Microbiology, 80(3), 994–1001.
MeSH headings : Clustered Regularly Interspaced Short Palindromic Repeats; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; Food Microbiology; Genetic Variation; Genotype; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Molecular Sequence Data; Molecular Typing / methods; Sequence Analysis, DNA
TL;DR:
Findings suggest that type II-A CRISPR-Cas systems are valuable for genotyping of L. buchneri, a species relevant for commercial silage, bioethanol, and vegetable fermentations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: ORCID
Added: January 2, 2020
2013 journal article
Milk Fatty Acids Predicted by Mid-infrared Spectroscopy in Mixed Dairy Herds
Agriculturae Conspectus Scientificus, 78(3), 263–266.
Source: ORCID
Added: December 31, 2019
2013 journal article
Heritability and repeatability of milk coagulation properties predicted by mid-infrared spectroscopy during routine data recording, and their relationships with milk yield and quality traits
Animal, 7(10), 1592–1599.
Contributors: F. Tiezzi *, D. Pretto*, M. De Marchi *, M. Penasa * & M. Cassandro *
author keywords: heritability; genetic correlation; mid-infrared spectroscopy; milk coagulation property; Holstein-Friesian dairy cow
MeSH headings : Animals; Caseins / chemistry; Cattle / genetics; Cattle / physiology; Female; Milk / chemistry; Milk / standards; Milk Proteins / chemistry; Spectrophotometry, Infrared / methods
TL;DR:
Results suggest that genetic evaluation for MCP predicted by MIRS is feasible at population level, and several repeated measures per cow during a lactation are required to estimate reliable breeding values for coagulation traits.
(via Semantic Scholar)
Source: ORCID
Added: December 31, 2019
2013 speech
TED Talk: Sanitation is a Basic Human Right
In TED Talk. https://www.ted.com/talks/francis_de_los_reyes_sanitation_is_a_basic_human_right
Source: ORCID
Added: December 24, 2019
2013 conference paper
Teaching tropical plant pathology to a global audience
PHYTOPATHOLOGY, 103(6), 189–189.
Event: AMER PHYTOPATHOLOGICAL SOC 3340 PILOT KNOB ROAD, ST PAUL, MN 55121 USA
Source: ORCID
Added: December 20, 2019
2013 journal article
The Pandemic in 2009
Plant Disease, 97(3), 297.
Source: ORCID
Added: December 20, 2019
2013 journal article
The 2009 late blight pandemic in the eastern United States--causes and results
Plant Disease, 97(3), 296–306.
Source: ORCID
Added: December 20, 2019
2013 journal article
Reconstructing genome evolution in historic samples of the Irish potato famine pathogen
Nature Communications, 4, 2172.
Source: ORCID
Added: December 20, 2019
2013 conference paper
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants
2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.
Contributors: K. Merchante n, Q. Hu n, A. Stepanova n , J. Eonso & S. Heber n
TL;DR:
The goal of this project is to develop genomic tools for the qualitative and quantitative characterization of the plant translatome, and it is hoped ribosome footprinting will allow researchers to correlate precisely mRNA features with translation efficiency, and open the way to investigate globally the mechanism of protein synthesis and its regulation at an unprecedented level of detail.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2013 journal article
Perennial Biomass Grasses and the Mason–Dixon Line: Comparative Productivity across Latitudes in the Southern Great Plains
BioEnergy Research.
author keywords: Biofuel grasses; Switchgrass; Miscanthus; Simulation modeling
Source: ORCID
Added: December 19, 2019
2013 journal article
Climate affects symbiotic fungal endophyte diversity and performance
American Journal of Botany.
author keywords: drought; Panicum; perennial C-4 grass; precipitation gradient
TL;DR:
There was substantial variability in how individual endophytic taxa affected plant traits under high and low water availability, with up to two orders of magnitude difference in the plasticity of plant traits conferred by the different fungal taxa.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2013 book
Worldwide Migrations, Host Shifts, and Reemergence of Phytophthora Infestans, the Plant Destroyer
In Evolution of Virulence in Eukaryotic Microbes (pp. 192–207).
Contributors: J. Ristaino*
TL;DR:
This chapter provides an overview of the emergence of potato late blight in the 19th century and the evolutionary position, life.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2013 journal article
Molecular mechanisms of ethylene–auxin interactions
Molecular Plant, sst113.
Contributors: L. Robles, A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2013 journal article
Tradeoffs in microbial carbon allocation may mediate soil carbon storage in future climates
Front. Microbiol., 4.
author keywords: carbon allocation; extracellular enzyme activity; climate change; microbial physiology; biomass stoichiometry
TL;DR:
Soil microbes may differentially allocate C in changing environments by altering processes such as enzyme production, C use efficiency (CUE), or biomass stoichiometry, but because these mechanisms may operate simultaneously and interact, microbial physiological feedbacks on soil C storage are difficult to predict.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Source: ORCID
Added: December 19, 2019
2013 journal article
Genotypic variation in traits linked to climate and aboveground productivity in a widespread C 4 grass: evidence for a functional trait syndrome
New Phytol, 199(4), 966–980.
author keywords: C-4; climate change; evolution; genecology; Panicum virgatum (switchgrass); physiology; polyploidy
MeSH headings : Analysis of Variance; Carbon / metabolism; Climate; Genetic Variation; Genotype; Geography; Inheritance Patterns / genetics; Panicum / anatomy & histology; Panicum / genetics; Panicum / growth & development; Plant Leaves / anatomy & histology; Plant Leaves / genetics; Plant Leaves / growth & development; Ploidies; Principal Component Analysis; Quantitative Trait, Heritable; Seasons
TL;DR:
The results provide new insight into the role of climate in driving functional trait coordination, local adaptation and genetic divergence within species, and emphasize the importance of considering intraspecific variation in future climate change scenarios.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Source: ORCID
Added: December 19, 2019
2013 journal article
Biotic plant-soil feedbacks across temporal scales
J Ecol, 101(2), 309–315.
Ed(s): W. Putten
author keywords: competition; disturbance; life history; mycorrhizas; plant traits; population and community dynamics; primary and secondary succession; soil legacy
TL;DR:
This work synthesizes current knowledge on temporal aspects of plant–soil feedbacks and presents new ideas to better understand and predict the effects of plant-soil Feedback on community and ecosystem properties across temporal scales.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
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