Works Published in 2013

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Displaying works 221 - 240 of 660 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2013 journal article

Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models

Ecol Lett, 16(7), 887–894.

Ed(s): M. Holyoak

author keywords: Bacteria; biogeochemical model; enzymes; fungi; N mineralisation; overyielding; soil
MeSH headings : Bacterial Physiological Phenomena; Carbon / analysis; Fungi / physiology; Models, Theoretical; Nitrogen / analysis; Soil / chemistry
TL;DR: It is concluded that differences in bacterial and fungal physiology may have large consequences for ecosystem-scale C and N cycling. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2013 journal article

Identification of DNA variants in the canine beta-1 adrenergic receptor gene

Research in Veterinary Science, 95(1), 238–240.

By: B. Maran, K. Mealey, S. Lahmers, O. Nelson & K. Meurs*

author keywords: Pharmacogenomic; Beta blocker; Cardiac
MeSH headings : Amino Acid Sequence; Animals; Base Sequence; DNA / chemistry; DNA / genetics; Dogs / genetics; Genetic Variation; Molecular Sequence Data; Polymerase Chain Reaction / veterinary; Receptors, Adrenergic, beta-1 / genetics; Sequence Alignment
TL;DR: Two deletions were identified within the region of the gene that encodes the cytoplasmic tail of ADRB1, which is important in differentiating subtypes of adrenergic receptors and may be associated with control of receptor downregulation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Sources: Crossref, ORCID
Added: November 16, 2019

2013 journal article

Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an <

Journal of Experimental Botany, 64(10), 2665–2688.

By: D. Sudre*, E. Gutierrez-Carbonell*, G. Lattanzio*, R. Rellan-Alvarez*, F. Gaymard*, G. Wohlgemuth*, O. Fiehn*, A. Alvarez-Fernandez* ...

Contributors: D. Sudre*, E. Gutierrez-Carbonell*, G. Lattanzio*, R. Rellán-Álvarez*, F. Gaymard*, G. Wohlgemuth*, O. Fiehn*, A. Álvarez-Fernández* ...

author keywords: Ferritin; flowers; functional genomics; iron
MeSH headings : Arabidopsis / chemistry; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Electrophoresis, Gel, Two-Dimensional; Ferritins / genetics; Ferritins / metabolism; Flowers / chemistry; Flowers / genetics; Flowers / growth & development; Flowers / metabolism; Gene Expression Regulation, Plant; Iron / metabolism; Mass Spectrometry; Metabolome; Mutation; Plant Growth Regulators / metabolism; Proteome / chemistry; Proteome / genetics; Proteome / metabolism; Transcriptome
TL;DR: In spite of the large number of genes and proteins responsive to hormones found to be regulated in this study, changes in the hormonal balance were restricted to cytokinins, especially in the mutant plants grown under Fe excess conditions. (via Semantic Scholar)
Source: ORCID
Added: November 15, 2019

2013 chapter book

The Genetic Basis of Disease Resistance in Maize

By: T. Jamann, R. Nelson & P. Balint-Kurti*

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: ORCID, Crossref
Added: October 23, 2019

2013 journal article

Stochastic comparisons in a price-quantity setting firm with uncertain demand and emergency procurement

Journal of Systems Science and Systems Engineering, 22(4), 401–420.

By: M. Xu, X. Xu & Y. Zhou

Source: ORCID
Added: October 7, 2019

2013 chapter

Metabolomic Evaluation Of Cystic Fibrosis Airways Disease

In A26. PEDIATRIC CYSTIC FIBROSIS (pp. A1165–A1165). American Thoracic Society.

By: C. Esther, Y. Zhou, F. Wright & R. Boucher

Source: ORCID
Added: October 7, 2019

2013 journal article

Space-time clustering and the permutation moments of quadratic forms

Stat, 2(1), 292–302.

author keywords: exact testing; resampling; statistical computing
TL;DR: The extension of this work to quadratic forms greatly expands the utility of density approximations for these problems, including for high-dimensional applications, where the statistics must be extreme in order to exceed stringent testing thresholds. (via Semantic Scholar)
UN Sustainable Development Goal Categories
1. No Poverty (OpenAlex)
Sources: Crossref, ORCID
Added: October 7, 2019

2013 journal article

Skill-assessments of statistical and Ensemble Kalman Filter data assimilative analyses using surface and deep observations in the Gulf of Mexico

Frontiers of Earth Science, 7(3), 271–281.

By: Z. Sun*, L. Oey* & Y. Zhou*

author keywords: data assimilation; deep observation; Gulf of Mexico
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Crossref, ORCID
Added: October 7, 2019

2013 journal article

Empirical pathway analysis, without permutation

Biostatistics, (doi:10.1093/biostatistics/kxt004), 1–13.

By: Y. Zhou, W. Barry & F. Wright

Source: ORCID
Added: October 7, 2019

2013 journal article

Acute infection of mice with Clostridium difficile leads to eIF2α phosphorylation and pro-survival signalling as part of the mucosal inflammatory response

Immunology, 140(1), 111–122.

By: A. Sadighi Akha*, C. Theriot*, J. Erb-Downward*, A. McDermott*, N. Falkowski*, H. Tyra*, D. Rutkowski*, V. Young*, G. Huffnagle*

author keywords: Clostridium difficile; eIF2 alpha; interleukin-22; pSTAT3; RegIII gamma
MeSH headings : Acute Disease; Animals; Antimicrobial Cationic Peptides / genetics; Chemokines / genetics; Clostridioides difficile / immunology; Clostridioides difficile / pathogenicity; Cytokines / genetics; Enterocolitis, Pseudomembranous / genetics; Enterocolitis, Pseudomembranous / immunology; Enterocolitis, Pseudomembranous / metabolism; Eukaryotic Initiation Factor-2 / metabolism; Immunity, Innate; Immunity, Mucosal; Inflammation Mediators / metabolism; Interleukins / genetics; Intestinal Mucosa / immunology; Male; Mice; Mice, Inbred C57BL; Phosphorylation; Signal Transduction; Transcriptome; Unfolded Protein Response
TL;DR: Data underscore the local, innate, pro‐inflammatory nature of the response to C. difficile and highlight eIF2α phosphorylation and the interleukin‐22–pSTAT3–RegIIIγ axis as two of the pathways that could be used to contain and counteract the damage inflicted on the intestinal epithelium. (via Semantic Scholar)
Source: Crossref
Added: September 13, 2019

2013 journal article

Microbial and metabolic interactions between the gastrointestinal tract and Clostridium difficile infection

Gut Microbes, 5(1), 86–95.

By: C. Theriot* & V. Young*

author keywords: Clostridium difficile; antibiotics; gut microbiota; gut metabolome; colonization resistance
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Clostridioides difficile / drug effects; Clostridioides difficile / growth & development; Clostridioides difficile / metabolism; Clostridium Infections / drug therapy; Clostridium Infections / metabolism; Clostridium Infections / microbiology; Gastrointestinal Tract / metabolism; Gastrointestinal Tract / microbiology; Humans; Microbiota / drug effects
TL;DR: How antibiotics alter the structure of the gut microbiota and how this impacts bacterial metabolism in the gut is discussed and the chemical requirements for C. difficile germination, growth, toxin production and sporulation are explored. (via Semantic Scholar)
Source: Crossref
Added: September 13, 2019

2013 journal article

Heritable Epigenetic Variation and its Potential Applications for Crop Improvement

Plant Breeding and Biotechnology, 1(4), 307–319.

By: C. Zhang n & T. Hsieh n

TL;DR: There is a potential for epigenetics to play a role in crop improvement, including regulation of transgene expression and creation of novel epialleles, and how the studies from two epigenetic populations are rapidly increasing the authors' understanding of epigenetic diversity is discussed. (via Semantic Scholar)
Sources: ORCID, Crossref
Added: September 13, 2019

2013 chapter

Epigenetic Control of Seed Gene Imprinting

In Seed Genomics (pp. 63–82).

By: C. Ibarra*, J. Frost*, J. Shin*, T. Hsieh* & R. Fischer*

Sources: ORCID, Crossref
Added: September 13, 2019

2013 journal article

A Conserved Mammalian Protein Interaction Network

PLoS ONE, 8(1).

Contributors: Å. Pérez-Bercoff*, C. Hudson* & G. Conant*

MeSH headings : Animals; Conserved Sequence / genetics; Evolution, Molecular; Humans; Mammals / classification; Mammals / genetics; Models, Genetic; Phylogeny; Primates / genetics; Protein Interaction Maps / genetics; Time Factors
TL;DR: Paired alignments of orthologous and putatively interacting protein-coding genes from eight mammals are analyzed to suggest that, on the whole, protein interactions in mammals are under selective constraint, presumably due to their functional roles. (via Semantic Scholar)
Source: ORCID
Added: September 12, 2019

2013 journal article

Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

Seminars in Cell and Developmental Biology, 24(4), 320–331.

Contributors: D. Mayfield-Jones*, J. Washburn*, T. Arias*, P. Edger*, J. Pires* & G. Conant*

author keywords: Polyploidy; WGD; Network evolution; Meiosis; Mitosis; Cancer; Warburg effect; Crabtree effect
MeSH headings : Animals; Biological Evolution; Evolution, Molecular; Genome; Humans; Plants / genetics; Polyploidy
TL;DR: It is argued that the study of polyploidy across organisms, cell types, and time scales serves not only as a window into basic cell biology, but also as a basis for a predictive biology with applications ranging from crop improvement to treating cancer. (via Semantic Scholar)
Source: ORCID
Added: September 12, 2019

2013 conference paper

A distributed CPU-GPU framework for pairwise alignments on large-scale sequence datasets

Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors, 329–338.

By: D. Li*, K. Sajjapongse*, H. Truong*, G. Conant* & M. Becchi*

Contributors: D. Li*, K. Sajjapongse*, H. Truong*, G. Conant* & M. Becchi*

TL;DR: This paper presents a parallel version of the Needleman-Wunsch alignment algorithm for graphics processing units (GPUs), which can be used for all-against-all pairwise comparisons on large datasets. (via Semantic Scholar)
Source: ORCID
Added: September 12, 2019

2013 journal article

Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome

PLoS ONE, 8(11).

By: S. Warren*, X. Wan*, G. Conant* & D. Korkin*

Contributors: S. Warren*, X. Wan*, G. Conant* & D. Korkin*

MeSH headings : Biological Evolution; Influenza A Virus, H1N1 Subtype / classification; Influenza A Virus, H1N1 Subtype / genetics; Influenza A Virus, H1N1 Subtype / metabolism; Phylogeny; Viral Proteins / genetics; Viral Proteins / metabolism
TL;DR: A single coherent pattern of faster evolution on the protein surfaces that characterizes all influenza proteins is found, consistent with the events of inter-species reassortment, the worldwide introduction of the flu vaccine in the early 80’s, as well as the differences caused by the geographic origins of the virus. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: ORCID
Added: September 12, 2019

2013 journal article

Investigating effects of between- and within-host variability on Escherichia coli O157 shedding pattern and transmission

Preventive Veterinary Medicine, 109(1-2), 47–57.

Contributors: S. Chen*, M. Sanderson* & C. Lanzas*

author keywords: Escherichia coli 0157; Fecal shedding; Between- and within-host variability; Supershedder; Mathematical model
MeSH headings : Animals; Bacterial Shedding; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / microbiology; Cattle Diseases / transmission; Escherichia coli Infections / epidemiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Escherichia coli O157 / physiology; Feces / microbiology; Humans; Models, Biological; Prevalence
TL;DR: It is demonstrated that even without between-host variability, the prevalence of animals with concentration of E. coli O157 in feces that exceeds 10(4)CFU/g is similar to that observed in cross-sectional field data. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: ORCID
Added: September 9, 2019

2013 journal article

Modelling dynamics of plasmid-gene mediated antimicrobial resistance in enteric bacteria using stochastic differential equations

Scientific Reports, 3.

MeSH headings : Animals; Anti-Bacterial Agents / therapeutic use; Cattle; Computer Simulation; Drug Resistance, Bacterial / genetics; Enterobacteriaceae / drug effects; Enterobacteriaceae / genetics; Enterobacteriaceae Infections / epidemiology; Enterobacteriaceae Infections / genetics; Enterobacteriaceae Infections / veterinary; Models, Genetic; Models, Statistical; Plasmids / genetics; Prevalence
TL;DR: The results demonstrated that demographic stochasticity among enteric E. coli in the occurrence of relevant events was important for the AMR dynamics only when bacterial numbers were depressed during therapy. (via Semantic Scholar)
Source: ORCID
Added: September 9, 2019

2013 journal article

Evalution of the "Iceberg Phenomenon" in Johne's Disease through Mathematical Modelling

PLoS ONE, 8(10).

By: G. Magombedze*, C. Ngonghala* & C. Lanzas*

Contributors: G. Magombedze*, C. Ngonghala* & C. Lanzas*

MeSH headings : Animals; Cattle; Cattle Diseases / microbiology; Cattle Diseases / physiopathology; Models, Biological; Mycobacterium avium subsp. paratuberculosis; Paratuberculosis / microbiology; Paratuberculosis / physiopathology
TL;DR: A deterministic ordinary differential equation model of JD transmission and disease progression dynamics is developed and duration periods associated with the natural course of the disease progression are used, and the above ratios do not hold. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: ORCID
Added: September 9, 2019

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