Works Published in 2006

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Displaying works 41 - 60 of 364 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2006 journal article

Multifactor dimensionality reduction reveals gene–gene interactions associated with multiple sclerosis susceptibility in African Americans

Genes & Immunity, 7(4), 310–315.

By: D. Brassat*, A. Motsinger*, S. Caillier*, H. Erlich*, K. Walker*, L. Steiner*, B. Cree*, L. Barcellos* ...

MeSH headings : Black or African American / genetics; Case-Control Studies; Epistasis, Genetic; Female; Gene Deletion; Genetic Predisposition to Disease; Genotype; Humans; Interleukin-5 Receptor alpha Subunit; Lipopolysaccharide Receptors / genetics; Male; Multifactorial Inheritance; Multiple Sclerosis / genetics; Multiple Sclerosis / immunology; Polymorphism, Genetic; Polymorphism, Single Nucleotide; Receptors, Interleukin / genetics; Receptors, Interleukin-4 / genetics
TL;DR: A highly efficient multilocus genotyping assay representing variation in 34 genes associated with inflammatory pathways is used to explore gene–gene interactions and disease susceptibility in a well-characterized African-American case–control MS data set, and the multifactor dimensionality reduction (MDR) test is applied to detect epistasis. (via Semantic Scholar)
Source: Crossref
Added: October 29, 2021

2006 chapter

Comparison of Neural Network Optimization Approaches for Studies of Human Genetics

In F. Rothlauf (Ed.), Applications of Evolutionary Computing. EvoWorkshops 2006 (pp. 103–114).

By: A. Motsinger*, S. Dudek*, L. Hahn* & M. Ritchie*

Ed(s): F. Rothlauf

TL;DR: This study demonstrates the utility of using GE to evolve NN in studies of complex human disease and compares the performance of GENN to GPNN, a traditional back-propagation neural network (BPNN) and a random search algorithm. (via Semantic Scholar)
Source: Crossref
Added: October 29, 2021

2006 journal article

The effect of reduction in cross-validation intervals on the performance of multifactor dimensionality reduction

Genetic Epidemiology, 30(6), 546–555.

By: A. Motsinger* & M. Ritchie*

author keywords: model validation; MDR; epistasis; gene-gene interactions
MeSH headings : Alzheimer Disease / genetics; Genetic Predisposition to Disease / genetics; Genotype; Humans; Models, Genetic; Multifactorial Inheritance; Polymorphism, Genetic; Risk Assessment / statistics & numerical data
TL;DR: It was found that eliminating CV made final model selection impossible, but that reducing the number of CV intervals from ten to five caused no loss of power, thereby reducing the computation time of the algorithm by half. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: Crossref
Added: October 29, 2021

2006 conference paper

Comparison of North American and Paleartic Unionid Bivalves: A Contrast: The Classifications Of Haas And Starobogatov

Bogan, A. E., Mandryka, O., Mock, K., Hoeh, W., Raley, M., & Levine, J. (2006, September). Presented at the First Baltic Symposium of Malacology: Diversity and Conservation of European Molluscan Fauna, Riga, Latvia.

By: A. Bogan, O. Mandryka, K. Mock, W. Hoeh, M. Raley & J. Levine

Event: First Baltic Symposium of Malacology: Diversity and Conservation of European Molluscan Fauna at Riga, Latvia

Source: NC State University Libraries
Added: September 30, 2021

2006 conference paper

Rapid And Specific Real-Time Polymerase Chain Reaction Method For Detection of Viable Salmonella spp. in Poultry Feed and Feedstuffs

Li, X., & Levine, J. F. (2006, July). Presented at the Poultry Science Association Annual Meeting, Edmonton, CA.

By: X. Li & J. Levine

Event: Poultry Science Association Annual Meeting at Edmonton, CA

Source: NC State University Libraries
Added: September 30, 2021

2006 journal article

Structural basis for DNA recognition and processing by UvrB

Nature Structural & Molecular Biology, 13(4), 360–364.

By: J. Truglio*, E. Karakas*, B. Rhau*, H. Wang*, M. DellaVecchia*, B. Van Houten*, C. Kisker*

MeSH headings : Bacillus / genetics; Bacillus / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Base Sequence; Crystallography, X-Ray; DNA Damage; DNA Repair; DNA, Bacterial / chemistry; DNA, Bacterial / genetics; DNA, Bacterial / metabolism; Macromolecular Substances; Models, Molecular; Static Electricity
TL;DR: The first structure of a UvrB–double-stranded DNA complex is reported, providing insights into the mechanism by which Uvr B binds DNA, leading to formation of the preincision complex. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 23, 2021

2006 journal article

UvrB Domain 4, an Autoinhibitory Gate for Regulation of DNA Binding and ATPase Activity

Journal of Biological Chemistry, 281(22), 15227–15237.

By: H. Wang*, M. DellaVecchia*, M. Skorvaga*, D. Croteau*, D. Erie* & B. Van Houten*

MeSH headings : Adenosine Triphosphatases / genetics; Adenosine Triphosphatases / metabolism; Amino Acid Sequence; Bacillus / genetics; Bacillus / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Base Sequence; DNA Damage; DNA Repair; DNA, Bacterial / genetics; DNA, Bacterial / metabolism; Dimerization; Kinetics; Models, Biological; Molecular Sequence Data; Protein Structure, Quaternary; Protein Structure, Tertiary; Sequence Homology, Amino Acid
TL;DR: Using atomic force microscopy and biochemical assays, it is found that truncation of domain 4 of Bacillus caldotenax UvrB (UvrBΔ4) leads to multiple changes in protein function and is proposed that other than its previously discovered role in regulating protein-protein interactions, domain 4 is an autoinhibitory domain regulating the DNA binding and ATPase activities of Uvr B. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 23, 2021

2006 journal article

The C-terminal Zinc Finger of UvrA Does Not Bind DNA Directly but Regulates Damage-specific DNA Binding

Journal of Biological Chemistry, 281(36), 26370–26381.

By: D. Croteau*, M. DellaVecchia*, H. Wang*, R. Bienstock*, M. Melton* & B. Van Houten*

MeSH headings : Adenosine Triphosphatases / chemistry; Adenosine Triphosphatases / genetics; Adenosine Triphosphatases / metabolism; Adenosine Triphosphate / metabolism; Amino Acid Sequence; DNA / metabolism; DNA Damage; DNA Helicases / genetics; DNA Helicases / metabolism; DNA Repair; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Dimerization; Escherichia coli / genetics; Escherichia coli / metabolism; Escherichia coli Proteins / chemistry; Escherichia coli Proteins / genetics; Escherichia coli Proteins / metabolism; Magnesium / metabolism; Models, Molecular; Molecular Sequence Data; Mutation; Protein Binding; Protein Structure, Quaternary; Protein Structure, Secondary; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Sequence Alignment; Ultraviolet Rays; Zinc Fingers
TL;DR: Data demonstrate that the C-terminal zinc finger of UvrA is required for regulation of damage-specific DNA binding. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 23, 2021

2006 conference paper

Detection Of Spring Viremia Of Carp Virus By Loop Mediated Isothermal Amplification (Lamp)

Shivappa, R. B., Savan, R., Masahiro, S., & Levine, J. F. (2006, November). Presented at the International Symposium on Aquatic Animal Health, San Francisco, CA.

By: R. Shivappa, R. Savan, S. Masahiro & J. Levine

Event: International Symposium on Aquatic Animal Health at San Francisco, CA

Source: NC State University Libraries
Added: September 18, 2021

2006 journal article

Genetic variation in frost resistance of Eucalyptus globulus ssp. globulus assessed by artificial freezing in winter

Australian Journal of Botany, 54(6), 521.

By: W. Tibbits*, T. White*, G. Hodge n & N. Borralho*

TL;DR: Winter-frost tolerance was a trait with considerable variation and also under strong additive genetic control, although patterns of frost tolerance with race were not clear and consistent in all three experiments, although inland south-eastern Tasmanian and West Coast Tasmanian races were usually the more frost tolerant. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: Crossref
Added: August 8, 2021

2006 chapter

Protistan community structure

In Manual of Environmental Microbiology.

Astrid Schnetzer

Source: ORCID
Added: August 4, 2021

2006 journal article

Geographical and seasonal gradients in hatching failure in Eastern Bluebirds Sialia sialis reinforce clutch size trends

Ibis, 148(2), 221–230.

TL;DR: The results demonstrate that investigating causes of variation in demography among local populations across a geographical gradient provides a potential means of identifying selection pressures on life-history traits and warrants further research into other causes of hatching failure. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: June 12, 2021

2006 journal article

Warm temperatures lead to early onset of incubation, shorter incubation periods and greater hatching asynchrony in tree swallows Tachycineta bicolor at the extremes of their range

Journal of Avian Biology, 37(2), 137–142.

By: D. Ardia*, C. Cooper* & A. Dhondt

TL;DR: The results are consistent with the egg viability hypothesis, not consistent with a threshold clutch size rule, and do not support the hurry-up hypothesis, that individuals breeding later in the season would begin incubation early to reduce the time spent nesting. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Crossref, ORCID
Added: June 12, 2021

2006 chapter

Bivalves

In G. A. Lewbart (Ed.), Invertebrate Medicine (pp. 91–113).

By: J. Levine, M. Law & F. Corsin

Ed(s): G. Lewbart n

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: Crossref
Added: April 26, 2021

2006 conference paper

Analysis of cell wall synthesis in feeding cells formed by root-knot nematodes

Biology of plant-microbe interactions - Proceedings of the 12th International Congress on Molecular Plant-Microbe Interactions, Mérida, Yucatán, México, 281–285.

By: L. Hudson, C. Haigler & E. Davis

Event: 12th International Congress on Molecular Plant-Microbe Interactions, at Mérida, Yucatán, México on December 14-19, 2005

Source: NC State University Libraries
Added: April 24, 2021

2006 chapter

Cabbage Diseases, Ecology and Control

In D. Pimentel (Ed.), Encyclopedia of Pest Management. New York, NY: Taylor & Francis.

By: A. Keinath, M. Cubeta & D. Langston

Ed(s): D. Pimentel

Source: NC State University Libraries
Added: April 24, 2021

2006 journal article

Cholangiohepatitis, suppurative cholangitis, and cholelithiasis

Compendium on Continuing Education for the Practicing Veterinarian Equine Edition, 1, 222–225.

By: S. Jones

Source: NC State University Libraries
Added: March 23, 2021

2006 chapter

Phosphoinositide Metabolism: Towards an Understanding of Subcellular Signaling

In A. L. Majumber & B. B. Biswas (Eds.), Biology of Inositols and Phosphoinositides (pp. 181–205).

By: W. Boss n, A. Davis n, Y. Im n, R. Galvão n & I. Perera n

Ed(s): A. Majumber & B. Biswas

MeSH headings : Animals; Humans; Multigene Family; Phosphatidylinositols / metabolism; Signal Transduction / genetics; Signal Transduction / physiology
TL;DR: The goal is to convince the reader of the importance of characterizing the metabolic fluxes within the discrete subcellular phospholipid microdomains that make up the lipid signaling pools. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Crossref, NC State University Libraries
Added: March 7, 2021

2006 report

Nanotechnology in Agriculture and Food Production: Anticipated Applications.

[Project on Emerging Nanotechnologies]. Washington DC: Woodrow Wilson International Center for Scholars.

By: J. Kuzma & P. VerHage

Source: NC State University Libraries
Added: February 27, 2021

2006 journal article

Rapid aerosol transmission of Salmonella among turkeys in a simulated holding-shed environment

Poultry Science, 85(10), 1693–1699.

By: E. Harbaugh, D. Trampel, I. Wesley, S. Hoff, R. Griffith & H. Hurd

Source: ORCID
Added: February 4, 2021

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