Works Published in 2021

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Displaying works 61 - 80 of 770 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 journal article

Effects of polycyclic aromatic hydrocarbons and abiotic stressors on Fundulus grandis cardiac transcriptomics

Science of the Total Environment, 752.

By: E. Allmon*, J. Serafin*, S. Chen*, M. Rodgers*, R. Griffitt*, T. Bosker*, S. Guise*, M. Sepúlveda*

Contributors: E. Allmon*, J. Serafin*, S. Chen*, M. Rodgers*, R. Griffitt*, T. Bosker*, S. Guise*, M. Sepúlveda*

MeSH headings : Animals; Fundulidae / genetics; Petroleum; Petroleum Pollution / adverse effects; Polycyclic Aromatic Hydrocarbons / analysis; Polycyclic Aromatic Hydrocarbons / toxicity; Transcriptome; Water Pollutants, Chemical / analysis; Water Pollutants, Chemical / toxicity
TL;DR: Exposure to oil and abiotic stressors appear to reduce development of the systemic vasculature as well as strongly impact the cardiac musculature through cardiomyocyte proliferation resulting in inhibited cardiac function and modulated blood pressure maintenance in developing Fundulus grandis larvae. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: ORCID
Added: April 6, 2023

2021 journal article

Characterization of the differential expressed genes and transcriptomic pathway analysis in the liver of sub-adult red drum (Sciaenops ocellatus) exposed to Deepwater Horizon chemically dispersed oil

Ecotoxicology and Environmental Safety, 214.

By: T. Sherwood*, M. Rodgers*, A. Tarnecki* & D. Wetzel*

Contributors: T. Sherwood*, M. Rodgers*, A. Tarnecki* & D. Wetzel*

MeSH headings : Animals; Fishes; Gene Expression Profiling; Gulf of Mexico; Lipids; Liver / chemistry; Perciformes / physiology; Petroleum / toxicity; Petroleum Pollution / analysis; Transcriptome / physiology; Water / analysis; Water Pollutants, Chemical / toxicity
TL;DR: It is indicated that CEWAF exposure significantly affects gene expression and alters signaling of biological pathways important in detoxification, immunity, and normal cellular physiology, which can have potential consequences on organismal fitness. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: ORCID
Added: April 6, 2023

2021 journal article

Multiscale modeling of genome organization with maximum entropy optimization

The Journal of Chemical Physics, 155(1), 010901.

MeSH headings : Algorithms; DNA / genetics; Entropy; Humans; Models, Genetic; Molecular Dynamics Simulation
TL;DR: Applications ofarse-grained models parameterized to reproduce experimental data via the maximum entropy optimization algorithm serve as effective means to study genome organization at various length scales and revealed physicochemical interactions that drive the phase separation of disordered proteins and dictate chromatin stability in situ. (via Semantic Scholar)
Sources: ORCID, Crossref, NC State University Libraries
Added: April 5, 2023

2021 journal article

Cooperative DNA looping by PRC2 complexes

Nucleic Acids Research, 49(11), 6238–6248.

TL;DR: The study suggests that accessory proteins may regulate the genomic location of PRC2 by interfering with its DNA interactions, and single-molecule experiments supportPRC2-mediated DNA looping and the role of AEBP2 in regulating such loop formation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: April 5, 2023

2021 journal article

Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms

Journal of Chemical Theory and Computation, 17(5), 3178–3187.

By: A. Oliveira Junior, X. Lin*, P. Kulkarni*, J. Onuchic*, S. Roy* & V. Leite*

MeSH headings : Amino Acid Sequence; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / metabolism; Phosphorylation; Protein Conformation; Protein Isoforms / chemistry; Protein Isoforms / metabolism; Reproducibility of Results; Sequence Homology, Amino Acid
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: April 5, 2023

2021 journal article

Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface

Nature Communications, 12(1).

MeSH headings : Acetylation; Algorithms; Animals; Chromatin / chemistry; Chromatin / genetics; Chromatin / metabolism; DNA / chemistry; DNA / genetics; DNA / metabolism; Histones / chemistry; Histones / metabolism; Humans; Models, Molecular; Nucleic Acid Conformation; Nucleosomes / chemistry; Nucleosomes / genetics; Nucleosomes / metabolism; Protein Conformation; Thermodynamics
TL;DR: A near atomistic model is applied to study the structure and dynamics of the chromatin folding unit - the tetra-nucleosome to provide insight into how chromatin folds and has implications on the in situ relevance of the 30 nm fiber. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: April 5, 2023

2021 article

Sustained IL-15 response signature predicts RhCMV/SIV vaccine efficacy

Barrenäs, F., Hansen, S. G., Law, L., Driscoll, C., Green, R. R., Smith, E., … Gale, M., Jr. (2021, January 11). (Vol. 1). Vol. 1.

By: F. Barrenäs*, S. Hansen*, L. Law*, C. Driscoll*, R. Green*, E. Smith*, J. Chang*, I. Golez* ...

TL;DR: It is found that arrest of viral replication after challenge significantly correlates with a vaccine-induced response to IL-15 that includes modulation of T cell, inflammation, TLR signaling, and cell death programming, suggesting that RhCMV/SIV efficacy is not based on chance, but rather, results from a coordinated and sustained vaccine-mediated induction of innate and adaptive immune pathways. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: ORCID
Added: March 15, 2023

2021 journal article

Three questions from CCTM teachers about Mathematical Modeling

Colorado Mathematics Teacher, 54(1), 1.

By: . Z Stankiewitz-Van, R. en & R. Levy

Source: ORCID
Added: February 6, 2023

2021 journal article

Evaluation of tomato breeding lines for Bacterial speck resistance

HortScience, 56(9S), S127.

By: D. Panthee, J. Zhang & A. Piotrowski

Event: Annual Conference of the American Society for Horticultural Science at Denver, CO on August 5-9, 2021

Source: NC State University Libraries
Added: February 3, 2023

2021 journal article

Next-generation sequencing-based bulked segregant analysis without sequencing the parental genomes

G3 Genes|Genomes|Genetics, 12(2).

Ed(s): A. Lipka

author keywords: BSA-Seq; PyBSASeq; QTL; genomic region-trait association; structural variants
MeSH headings : Genome, Plant; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Polymorphism, Single Nucleotide; Quantitative Trait Loci
TL;DR: The modified significant structural variant method allows the detection of such associations without sequencing the parental genomes, leading to further lower the sequencing cost and making BSA-Seq more accessible to the research community and more applicable to the species with a large genome. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (Web of Science)
Source: Crossref
Added: January 24, 2023

2021 journal article

Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces

Molecular Biology and Evolution, 38(9), 3567–3580.

By: L. Wang*, E. Josephs*, K. Lee*, L. Roberts*, R. Rellán-Álvarez n, J. Ross-Ibarra*, M. Hufford*

Ed(s): M. Purugganan

author keywords: convergent adaptation; flowering time; polygenic adaptation; population branch statistic
MeSH headings : Acclimatization / genetics; Alleles; Altitude; Phenotype; Zea mays / genetics
TL;DR: The study system represents a promising model to study convergent evolution in plants with potential applications to crop adaptation across environmental gradients andPolygenic adaptation analyses of quantitative traits reveal that alleles affecting flowering time are significantly associated with elevation, indicating the flowering time pathway was targeted by highland adaptation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Crossref, NC State University Libraries
Added: December 30, 2022

2021 journal article

Three questions from CCTM teachers about Mathematical Modeling

Colorado Mathematics Teacher, 54(1), 1.

By: R. Stankiewitz-Van der Zanden & R. Levy

Source: NC State University Libraries
Added: November 8, 2022

2021 chapter book

A Window into Mathematical Modeling in Kindergarten

By: R. Stankiewicz-Van Der Zanden*, S. Brown* & R. Levy*

Sources: Crossref, NC State University Libraries
Added: November 8, 2022

2021 article

Fire Ecology and Management in Eastern Broadleaf and Appalachian Forests

FIRE ECOLOGY AND MANAGEMENT PAST, PRESENT, AND FUTURE OF US FORESTED ECOSYSTEMS, Vol. 39, pp. 105–147.

By: M. Arthur n, J. Varner*, C. Lafon*, H. Alexander*, D. Dey*, C. Harper*, S. Horn*, T. Hutchinson* ...

author keywords: Oak-pine; Woodlands; Savannas; Maple; Anthropogenic fire; Pyrophytic; Mesophication; Prescribed fire
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: October 24, 2022

2021 article

A non-adaptive demographic mechanism for genome expansion in <i>Streptomyces</i>

Choudoir, M. J., Järvenpää, M. J., Marttinen, P., & Buckley, D. H. (2021, January 11). (Vol. 1). Vol. 1.

Contributors: M. Choudoir*

TL;DR: It is shown that non-adaptive evolutionary phenomena can explain expansion of microbial genome size, and suggested that this mechanism might explain why so many bacteria with large genomes can be found in soil. (via Semantic Scholar)
Source: ORCID
Added: September 19, 2022

2021 journal article

Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice

MSystems, 6(4).

Ed(s): J. Gilbert

author keywords: biopolitics; health disparities; social determinants of health; structural determinants of health; integrated research; microbiomes
TL;DR: Opportunities for integrating microbiology and social equity work through broadening education and training; diversifying research topics, methods, and perspectives; and advocating for evidence-based public policy that supports sustainable, equitable, and microbial wealth for all are outlined. (via Semantic Scholar)
Source: ORCID
Added: September 18, 2022

2021 report

Threats to Food and Agricultural Resources

[2021 Public-Private Analytic Exchange Program]. https://www.dhs.gov/sites/default/files/publications/threats_to_food_and_agriculture_resources.pdf

By: J. Bashura, M. Burke, R. Lapitan, J. Mikulec, T. Owens, B. Reading, J. Richt, D. Spencer ...

Source: NC State University Libraries
Added: September 8, 2022

2021 journal article

HITS: Harnessing a Collaborative Training Network to Create Case Studies that Integrate High-Throughput, Complex Datasets into Curricula

Frontiers in Education, 6, 711512.

By: S. Robertson*, A. Bixler*, M. Eslinger*, M. Gaudier-Diaz*, A. Kleinschmit*, P. Marsteller*, K. O'Toole*, U. Sankar*, C. Goller n

author keywords: high-throughput; collaborative network; data analyses; quantitative skills; pedagogical case studies
TL;DR: The rationale for engaging students in HT science, the authors' HT cases, and network model are shared to encourage other life science educators to join us and further develop and integrate HT complex datasets into curricula. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: June 6, 2022

2021 speech

Show me the Open Science: Dissecting Publishing Contracts

Goller, C. C., Simon, M., Vandegrift, M., & Cross, W. (2021, October).

By: C. Goller, M. Simon, M. Vandegrift & W. Cross

Event: on October 22, 2021

Source: NC State University Libraries
Added: May 21, 2022

2021 speech

Of all the bacteria around us... why Delftia? A BIT of an introduction to Biotechnology

Goller, C. C. (2021, November). Presented at the CPCC Research Club, Central Piedmont Community College.

By: C. Goller

Event: CPCC Research Club at Central Piedmont Community College on November 11, 2021

Source: NC State University Libraries
Added: May 21, 2022

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