Recent Works

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Sorted by most recent date added to the index first, which may not be the same as publication date order.

2025 journal article

How thoughtful experimental design can empower biologists in the omics era

Nature Communications.

MeSH headings : Research Design; Humans; Genomics / methods; Biology / methods
topics (OpenAlex): Genetics, Bioinformatics, and Biomedical Research; Biomedical and Engineering Education; Bioinformatics and Genomic Networks
Source: ORCID
Added: August 15, 2025

2025 article

The external potassium availability determines the effect of the arbuscular mycorrhizal fungus <i>Rhizophagus irregularis</i> on salinity tolerance in soybeans

Jones, A. P., Kafle, A., Rose, B. D., Dutta, S., Vann, R., Buecking, H., & Garcia, K. (2025, August 1). SYMBIOSIS, Vol. 8.

By: A. Jones, A. Kafle, B. Rose, S. Dutta, R. Vann, H. Buecking, K. Garcia

author keywords: Arbuscular mycorrhizal fungi; <italic>Glycine max</italic>; Potassium nutrition; <italic>Rhizophagus irregularis</italic>; Rubidium; Salinity
topics (OpenAlex):
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 1, 2025

2025 journal article

How population control of pests is modulated by density dependence: The perspective of genetic biocontrol

Journal of Theoretical Biology.

By: C. Butler & A. Lloyd

topics (OpenAlex):
Source: ORCID
Added: July 25, 2025

2025 journal article

Effect of modified light spectra on cadmium uptake and root exudation of tomato and mustard plants

ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 237.

By: J. Ochola*, P. Delgado-Sanchez, R. Hernandez* & O. Baars*

author keywords: Cadmium; Heavy metals; Light irradiation spectra; Mustard; Phytoremediation; Root exudates; Tomato
topics (OpenAlex): Light effects on plants; Leaf Properties and Growth Measurement; Magnetic and Electromagnetic Effects
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: July 21, 2025

2025 journal article

Preserving the Biologically Coherent Generic Concept of <i>Phytophthora</i>, “Plant Destroyer”

Brasier, C. M., Grunwald, N. J., Bourret, T. B., Govers, F., Scanu, B., Cooke, D. E. L., … Jung, T. (2025, June 21). Preserving the Biologically Coherent Generic Concept of Phytophthora, "Plant Destroyer".

By: I. Carbone & J. Ristaino (2 connected NC State authors and many others, 110 authors in total )

co-author countries: Austria 🇦🇹 Australia 🇦🇺 Brazil 🇧🇷 Canada 🇨🇦 Czechia 🇨🇿 Germany 🇩🇪 Spain 🇪🇸 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Greece 🇬🇷 Hungary 🇭🇺 Indonesia 🇮🇩 India 🇮🇳 Iran (Islamic Republic of) 🇮🇷 Italy 🇮🇹 Japan 🇯🇵 Nigeria 🇳🇬 Netherlands 🇳🇱 Norway 🇳🇴 New Zealand 🇳🇿 Peru 🇵🇪 Pakistan 🇵🇰 Portugal 🇵🇹 Serbia 🇷🇸 Rwanda 🇷🇼 Thailand 🇹🇭 South Africa 🇿🇦
author keywords: clades; cladistics; disease management; downy mildews; oomycetes; Pangea; paraphyly; phylogeny; plant biosecurity; scientific communication; taxonomy
MeSH headings : Phytophthora / classification; Phytophthora / genetics; Phytophthora / physiology; Plant Diseases / microbiology; Plant Diseases / parasitology; Phylogeny; Biological Evolution
topics (OpenAlex): Plant Pathogens and Resistance; Plant Pathogens and Fungal Diseases; Yeasts and Rust Fungi Studies
Sources: Web Of Science, NC State University Libraries, Crossref
Added: July 21, 2025

2025 journal article

Genome assembly and comparative analysis of <i>Alternaria Linariae</i> reveal novel genes associated with host colonization and virulence

BMC GENOMICS, 26(1).

co-author countries: South Africa 🇿🇦
author keywords: Alternaria Linariae; EB; Tomato; Host specificity
topics (OpenAlex): Fungal Plant Pathogen Control; Plant Pathogens and Fungal Diseases; Plant-Microbe Interactions and Immunity
Sources: Web Of Science, NC State University Libraries
Added: July 17, 2025

2025 article

A Minimal Medium for Culturing Maize Root-Associated Microbes Based on a Plant Growth Medium

Garrell, A.-K., Vintila, S., Phillip, H., Beck, A. E., & Kleiner, M. (2025, July 7).

By: A. Garrell, S. Vintila, H. Phillip, A. Beck & M. Kleiner*

topics (OpenAlex): Biofuel production and bioconversion
Source: ORCID
Added: July 15, 2025

2025 journal article

Advances in biomimetic carbonic anhydrase strategies for CO2 capture

Trends in Biotechnology.

By: M. Fedai, J. Shen, Z. Bognár, A. Kwansa, A. Grunden, S. Helveg, S. Salmon, Y. Yingling

co-author countries: Denmark 🇩🇰
topics (OpenAlex): Enzyme function and inhibition; Nanomaterials for catalytic reactions; Synthesis and Catalytic Reactions
Source: ORCID
Added: July 2, 2025

2025 journal article

Metaproteomics-based stable isotope fingerprinting links intestinal bacteria to their carbon source and captures diet-induced substrate switching

ISME JOURNAL, 19(1).

author keywords: gut microbiota; protein-based stable isotope fingerprinting; metaproteomics; microbiome
topics (OpenAlex): Microbial Community Ecology and Physiology; Gut microbiota and health; Amino Acid Enzymes and Metabolism
Sources: ORCID, Web Of Science, NC State University Libraries
Added: July 1, 2025

2025 journal article

<i>In vitro</i> demonstration and <i>in planta</i> characterization of a condensed, reverse TCA (crTCA) cycle

FRONTIERS IN PLANT SCIENCE, 16.

By: N. Wilson n, C. Smith-Moore, Y. Xu*, B. Edwards n, C. La Hovary n, K. Li n, D. Aslett n, M. Ji n ...

author keywords: photosynthesis; CO2 fixation; synthetic biology; Camelina sativa; reverse TCA cycle; carbon capture
topics (OpenAlex): Plant tissue culture and regeneration; Plant Virus Research Studies; Plant Pathogens and Resistance
Sources: Web Of Science, NC State University Libraries
Added: June 30, 2025

2025 journal article

Hidden treasures of herbaria - even small collections contain a wealth of diversity: the powdery mildews of the North Carolina State Larry F. Grand Mycological Herbarium

IMA FUNGUS, 16.

By: S. LaGreca n, U. Crouch n, A. Paul n, J. Thomas n, J. Thompson n, C. Shaw n, M. Cubeta n, U. Braun*, M. Bradshaw n

co-author countries: Germany 🇩🇪
author keywords: Collection Based Research; Erysiphaceae; Fungarium; Museums; NCSLG
topics (OpenAlex): Powdery Mildew Fungal Diseases; Yeasts and Rust Fungi Studies; Plant Pathogens and Fungal Diseases
Sources: Web Of Science, NC State University Libraries
Added: June 30, 2025

2025 article

Non-Thermal Plasma Activated Water is an Effective Nitrogen Fertilizer Alternative for Arabidopsis thaliana

Kizer, J., Robinson, C., Lucas, T. K., Shannon, S., Hernández, R., Stapelmann, K., & Rojas-Pierce, M. (2025, June 17).

By: J. Kizer, C. Robinson, T. Lucas, S. Shannon, R. Hernández, K. Stapelmann, M. Rojas-Pierce

topics (OpenAlex): Advanced Data Storage Technologies; Plasma Applications and Diagnostics
Source: ORCID
Added: June 17, 2025

2025 journal article

Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle

MOLECULAR BIOLOGY OF THE CELL, 36(6).

By: T. Kennedy n, B. Yalcinkaya n, S. Ramakanth n, S. Neupane n, N. Tadic n, N. Buchler n, O. Arguello-Miranda n

MeSH headings : Deep Learning; Saccharomyces cerevisiae / growth & development; Saccharomyces cerevisiae / cytology; Saccharomyces cerevisiae / metabolism; Cell Division / physiology; Meiosis / physiology; Saccharomyces cerevisiae Proteins / metabolism; Life Cycle Stages / physiology; Cell Cycle / physiology; CDC2 Protein Kinase / metabolism; Algorithms; Cell Proliferation
topics (OpenAlex): Fungal Biology and Applications; Microbial Natural Products and Biosynthesis; Probiotics and Fermented Foods
Sources: Web Of Science, NC State University Libraries
Added: June 16, 2025

2025 article

A phylogenetic study of the Cantharellales supports recognition of four families and independent gains of biotrophic nutritional modes

Swenie, R. A., Cubeta, M. A., Langer, G. J., Lawrey, J. D., Sikaroodi, M., Smith, M. E., & Matheny, P. B. (2025, June 4). AMERICAN JOURNAL OF BOTANY.

co-author countries: Germany 🇩🇪
author keywords: ancestral state reconstruction; basidiolichens; Botryobasidiaceae; Ceratobasidiaceae; ectomycorrhizal fungi; Hydnaceae; lichenicolous fungi; orchid mycorrhizae; phylogeny; Tulasnellaceae
topics (OpenAlex): Mycorrhizal Fungi and Plant Interactions; Lichen and fungal ecology; Plant Pathogens and Fungal Diseases
Sources: Web Of Science, NC State University Libraries
Added: June 9, 2025

2025 journal article

Deepened snow promotes temporal stability of semi-arid grasslands via improving water acquisition-and-use strategies

ECOLOGY, 106(5).

By: P. Li*, Z. Jia*, Y. Wu*, P. Chang*, N. Jalaid*, L. Guo*, S. Pan*, S. Wang* ...

co-author countries: China 🇨🇳
author keywords: community composition; functional stability; mowing disturbance; physiological response; water use efficiency; winter snow cover
MeSH headings : Snow; Grassland; Water / metabolism; Biomass; Time Factors; Plants / classification; Plants / metabolism; Seasons
topics (OpenAlex): Plant Water Relations and Carbon Dynamics; Cryospheric studies and observations; Climate change and permafrost
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: June 9, 2025

2025 article

Differential metaproteomics of bacteria grown in vitro and in planta reveals functions used during growth on maize roots

Garrell, A.-K., Cheadle, J., Crook, N., Pal, G., Septer, A. N., Wagner, M. R., … Kleiner, M. (2025, June 2).

By: A. Garrell, J. Cheadle, N. Crook, G. Pal, A. Septer, M. Wagner, A. Beck, M. Kleiner

topics (OpenAlex): Plant-Microbe Interactions and Immunity; Genomics and Phylogenetic Studies; Plant tissue culture and regeneration
Source: ORCID
Added: June 3, 2025

2025 chapter

Mutualistic Relationships Between Roots and Soil Microbes Facilitate Plant Potassium Acquisition

In Progress in Botany.

By: D. Cooney, B. Rose, A. Jones, H. Frank, G. Kafle, A. Kafle, K. Garcia*

topics (OpenAlex): Legume Nitrogen Fixing Symbiosis; Plant tissue culture and regeneration; Mycorrhizal Fungi and Plant Interactions
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: ORCID
Added: May 27, 2025

2025 journal article

Adaptations in gut Bacteroidales facilitate stable co-existence with their lytic bacteriophages

GUT MICROBES, 17(1).

co-author countries: Ireland 🇮🇪
author keywords: Bacteriophages; gut microbiome; intestinal microbiota; phage-bacteria interaction; virome; crassphages; <italic>Bacteroides</italic>; <italic>Parabacteroides</italic>; <italic>Crassvirales</italic>; co-culture
MeSH headings : Bacteriophages / physiology; Bacteriophages / genetics; Gastrointestinal Microbiome; Bacteroides / virology; Bacteroides / genetics; Bacteroides / physiology; Bacteroides / metabolism; Proteomics; Adaptation, Physiological; Humans; Bacteroidetes / virology; Bacteroidetes / genetics; Bacteroidetes / physiology
topics (OpenAlex): Bacteriophages and microbial interactions; Legume Nitrogen Fixing Symbiosis; Gut microbiota and health
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 23, 2025

2025 article

Benchmarking Spectral Library and Database Search Approaches for Metaproteomics Using a Ground-Truth Microbiome Dataset

Rajczewski, A. T., Mehta, S., Wagner, R., Gabriel, W., Johnson, J., Do, K., … Jagtap, P. D. (2025, May 20).

By: A. Rajczewski, S. Mehta, R. Wagner, W. Gabriel, J. Johnson, K. Do, S. Vintila, M. Wilhelm ...

topics (OpenAlex): Advanced Proteomics Techniques and Applications; Metabolomics and Mass Spectrometry Studies; Genomics and Phylogenetic Studies
Source: ORCID
Added: May 20, 2025

2025 article

Quantifying Summer Internal Phosphorus Loading in Large Lakes across the United States

Borah, S. S., Nelson, N. G., Duckworth, O. W., & Obenour, D. R. (2025, May 20). ENVIRONMENTAL SCIENCE & TECHNOLOGY, Vol. 5.

By: S. Borah n, N. Nelson n, O. Duckworth n & D. Obenour n

author keywords: Random forest regression; multilevel modeling; uncertainty propagation; hybridmodeling; eutrophication; nutrients
topics (OpenAlex): Soil and Water Nutrient Dynamics; Aquatic Ecosystems and Phytoplankton Dynamics; Fish Ecology and Management Studies
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 20, 2025

2025 review

Enabling technologies for<i> in</i><i> situ</i> biomanufacturing using probiotic yeast

[Review of ]. ADVANCED DRUG DELIVERY REVIEWS, 223.

author keywords: Yeast; Synthetic Biology; Probiotics; Therapeutics; Drug Discovery
topics (OpenAlex): Probiotics and Fermented Foods; Transgenic Plants and Applications; Microbial Metabolic Engineering and Bioproduction
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 16, 2025

2025 article

The microbiologist's guide to metaproteomics

Bossche, T. V. D., ARMENGAUD, J., Benndorf, D., Blakeley-Ruiz, J. A., Brauer, M., Cheng, K., … Initiative, T. M. (2025, May 6). IMETA, Vol. 5.

co-author countries: Belgium 🇧🇪 Canada 🇨🇦 China 🇨🇳 Germany 🇩🇪 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Italy 🇮🇹 Luxembourg 🇱🇺
author keywords: bioinformatics; functional dynamics; mass spectrometry; metaproteomics; microbiome
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Genomics and Phylogenetic Studies; Metabolomics and Mass Spectrometry Studies
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 7, 2025

2025 journal article

A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species

A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species. PLOS ONE, 20(1).

co-author countries: Norway 🇳🇴

Ed(s): J. Blair

MeSH headings : Phytophthora infestans / genetics; Phytophthora infestans / classification; Phylogeny; Evolution, Molecular; Genetic Variation; South America
topics (OpenAlex): Plant Pathogens and Resistance; Yeasts and Rust Fungi Studies; Plant Disease Resistance and Genetics
Sources: Web Of Science, NC State University Libraries, Crossref
Added: May 6, 2025

2025 journal article

Foot traffic on turf primarily shaped the endophytic bacteriome of the soil-rhizosphere-root continuum

FRONTIERS IN MICROBIOLOGY, 16.

By: S. Akther*, J. Hu*, G. Miller* & W. Shi*

author keywords: microbiome; endophytes; plant-microbial interaction; turfgrass; soil compaction
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Legume Nitrogen Fixing Symbiosis; Mycorrhizal Fungi and Plant Interactions
Sources: Web Of Science, NC State University Libraries
Added: May 6, 2025

2025 journal article

Soil pH and precipitation controls on organic carbon retention from organic amendments across soil orders: A meta-analysis

SOIL BIOLOGY & BIOCHEMISTRY, 207.

By: B. Wu, T. Bai, W. Yu, T. Zhu, D. Li, C. Ye, M. Liu, S. Hu*

author keywords: Agroecosystem; Microbial transformation; Organic input; Soil carbon stock; Soil order; Soil pH
topics (OpenAlex): Soil Carbon and Nitrogen Dynamics; Soil and Water Nutrient Dynamics; Peatlands and Wetlands Ecology
Sources: Web Of Science, NC State University Libraries
Added: May 6, 2025

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