Recent Works

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Sorted by most recent date added to the index first, which may not be the same as publication date order.

2025 article

Metaproteomics-based stable isotope fingerprinting links intestinal bacteria to their carbon source and captures diet-induced substrate switching

Kleiner, M., Mordant, A., & Blakeley-Ruiz, J. A. (2025, June 23).

topics (OpenAlex): Microbial Community Ecology and Physiology; Gut microbiota and health; Amino Acid Enzymes and Metabolism
Source: ORCID
Added: July 1, 2025

2025 journal article

<i>In vitro</i> demonstration and <i>in planta</i> characterization of a condensed, reverse TCA (crTCA) cycle

FRONTIERS IN PLANT SCIENCE, 16.

By: N. Wilson n, C. Smith-Moore, Y. Xu*, B. Edwards n, C. La Hovary n, K. Li n, D. Aslett n, M. Ji n ...

author keywords: photosynthesis; CO2 fixation; synthetic biology; Camelina sativa; reverse TCA cycle; carbon capture
topics (OpenAlex): Plant tissue culture and regeneration; Plant Virus Research Studies; Plant Pathogens and Resistance
Sources: Web Of Science, NC State University Libraries
Added: June 30, 2025

2025 journal article

Hidden treasures of herbaria - even small collections contain a wealth of diversity: the powdery mildews of the North Carolina State Larry F. Grand Mycological Herbarium

IMA FUNGUS, 16.

By: S. LaGreca n, U. Crouch n, A. Paul n, J. Thomas n, J. Thompson n, C. Shaw n, M. Cubeta n, U. Braun*, M. Bradshaw n

co-author countries: Germany 🇩🇪
author keywords: Collection Based Research; Erysiphaceae; Fungarium; Museums; NCSLG
topics (OpenAlex): Powdery Mildew Fungal Diseases; Yeasts and Rust Fungi Studies; Plant Pathogens and Fungal Diseases
Sources: Web Of Science, NC State University Libraries
Added: June 30, 2025

2025 journal article

Deep learning-driven imaging of cell division and cell growth across an entire eukaryotic life cycle

MOLECULAR BIOLOGY OF THE CELL, 36(6).

By: T. Kennedy n, B. Yalcinkaya n, S. Ramakanth n, S. Neupane n, N. Tadic n, N. Buchler n, O. Arguello-Miranda n

MeSH headings : Deep Learning; Saccharomyces cerevisiae / growth & development; Saccharomyces cerevisiae / cytology; Saccharomyces cerevisiae / metabolism; Cell Division / physiology; Meiosis / physiology; Saccharomyces cerevisiae Proteins / metabolism; Life Cycle Stages / physiology; Cell Cycle / physiology; CDC2 Protein Kinase / metabolism; Algorithms; Cell Proliferation
topics (OpenAlex): Fungal Biology and Applications; Microbial Natural Products and Biosynthesis; Probiotics and Fermented Foods
Sources: Web Of Science, NC State University Libraries
Added: June 16, 2025

2025 article

A phylogenetic study of the Cantharellales supports recognition of four families and independent gains of biotrophic nutritional modes

Swenie, R. A., Cubeta, M. A., Langer, G. J., Lawrey, J. D., Sikaroodi, M., Smith, M. E., & Matheny, P. B. (2025, June 4). AMERICAN JOURNAL OF BOTANY, Vol. 6.

co-author countries: Germany 🇩🇪
author keywords: ancestral state reconstruction; basidiolichens; Botryobasidiaceae; Ceratobasidiaceae; ectomycorrhizal fungi; Hydnaceae; lichenicolous fungi; orchid mycorrhizae; phylogeny; Tulasnellaceae
topics (OpenAlex): Mycorrhizal Fungi and Plant Interactions; Lichen and fungal ecology; Plant Pathogens and Fungal Diseases
Sources: Web Of Science, NC State University Libraries
Added: June 9, 2025

2025 journal article

Deepened snow promotes temporal stability of semi-arid grasslands via improving water acquisition-and-use strategies

ECOLOGY, 106(5).

By: P. Li*, Z. Jia*, Y. Wu*, P. Chang*, N. Jalaid*, L. Guo*, S. Pan*, S. Wang* ...

co-author countries: China 🇨🇳
author keywords: community composition; functional stability; mowing disturbance; physiological response; water use efficiency; winter snow cover
MeSH headings : Snow; Grassland; Water / metabolism; Biomass; Time Factors; Plants / classification; Plants / metabolism; Seasons
topics (OpenAlex): Plant Water Relations and Carbon Dynamics; Cryospheric studies and observations; Climate change and permafrost
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: June 9, 2025

2025 chapter

Mutualistic Relationships Between Roots and Soil Microbes Facilitate Plant Potassium Acquisition

In Progress in Botany.

By: D. Cooney, B. Rose, A. Jones, H. Frank, G. Kafle, A. Kafle, K. Garcia*

topics (OpenAlex): Legume Nitrogen Fixing Symbiosis; Plant tissue culture and regeneration; Mycorrhizal Fungi and Plant Interactions
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: ORCID
Added: May 27, 2025

2025 journal article

A pangenome analysis reveals the center of origin and evolutionary history of <i>Phytophthora infestans</i> and 1c clade species

PLOS ONE, 20(1).

co-author countries: Norway 🇳🇴
MeSH headings : Phytophthora infestans / genetics; Phytophthora infestans / classification; Phylogeny; Evolution, Molecular; Genetic Variation; South America
topics (OpenAlex): Plant Pathogens and Resistance; Yeasts and Rust Fungi Studies; Plant Disease Resistance and Genetics
Sources: Web Of Science, NC State University Libraries
Added: May 6, 2025

2025 journal article

Foot traffic on turf primarily shaped the endophytic bacteriome of the soil-rhizosphere-root continuum

FRONTIERS IN MICROBIOLOGY, 16.

By: S. Akther*, J. Hu*, G. Miller* & W. Shi*

author keywords: microbiome; endophytes; plant-microbial interaction; turfgrass; soil compaction
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Legume Nitrogen Fixing Symbiosis; Mycorrhizal Fungi and Plant Interactions
Sources: Web Of Science, NC State University Libraries
Added: May 6, 2025

2025 journal article

Soil pH and precipitation controls on organic carbon retention from organic amendments across soil orders: A meta-analysis

SOIL BIOLOGY & BIOCHEMISTRY, 207.

By: B. Wu, T. Bai, W. Yu, T. Zhu, D. Li, C. Ye, M. Liu, S. Hu*

author keywords: Agroecosystem; Microbial transformation; Organic input; Soil carbon stock; Soil order; Soil pH
topics (OpenAlex): Soil Carbon and Nitrogen Dynamics; Soil and Water Nutrient Dynamics; Peatlands and Wetlands Ecology
Sources: Web Of Science, NC State University Libraries
Added: May 6, 2025

2025 article

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

Rajczewski, A. T., Blakeley-Ruiz, J. A., Meyer, A., Vintila, S., Mcilvin, M. R., Bossche, T., … Jagtap, P. D. (2025, April 10). PROTEOMICS, Vol. 4.

co-author countries: Belgium 🇧🇪
author keywords: artificial microbial community; metaproteome; microbiome; microbiota; synthetic community
topics (OpenAlex): Advanced Proteomics Techniques and Applications; Mass Spectrometry Techniques and Applications; Metabolomics and Mass Spectrometry Studies
Sources: ORCID, Web Of Science, NC State University Libraries
Added: April 11, 2025

2025 article

Manipulation of targeted protein degradation in plant biology

Rojas-Pierce, M., & Bednarek, S. Y. (2025, April). BIOCHEMICAL SOCIETY TRANSACTIONS, Vol. 4.

MeSH headings : Proteolysis; Plant Proteins / metabolism; Plants / metabolism; Ubiquitination; Ubiquitin-Protein Ligases / metabolism; Proteasome Endopeptidase Complex / metabolism
topics (OpenAlex): Protein Degradation and Inhibitors; Ubiquitin and proteasome pathways; Autophagy in Disease and Therapy
Sources: ORCID, Web Of Science, NC State University Libraries
Added: April 10, 2025

2025 journal article

Genetic potential of soil microbial nitrogen cycling affected by human activities and climate factors

SOIL ECOLOGY LETTERS, 7(2).

By: T. Lu, C. Lei, N. Xu, Q. Zhang, Z. Zhang, J. Kang, M. Jin, T. Wang ...

author keywords: soil nitrogen cycle; nitrous oxide; microbial N-cycling genes; nitrogen fertilizer; Anthropocene
topics (OpenAlex): Soil Carbon and Nitrogen Dynamics; Legume Nitrogen Fixing Symbiosis; Microbial Community Ecology and Physiology
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science; OpenAlex)
14. Life Below Water (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 24, 2025

2025 journal article

Mycorrhiza increases plant diversity and soil carbon storage in grasslands

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 122(7).

By: E. Zhang*, Y. Wang*, T. Crowther*, W. Sun*, S. Chen*, D. Zhou*, Z. Shangguan*, J. Huang* ...

co-author countries: Switzerland 🇨🇭 China 🇨🇳
author keywords: arbuscular mycorrhizal fungi; soil organic carbon storage; plant diversity; biomass allocation
MeSH headings : Mycorrhizae / physiology; Grassland; Soil / chemistry; Carbon / metabolism; Carbon / analysis; Biodiversity; China; Symbiosis; Soil Microbiology; Plants / microbiology; Biomass
topics (OpenAlex): Mycorrhizal Fungi and Plant Interactions; Forest Ecology and Biodiversity Studies; Ecology and Vegetation Dynamics Studies
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: March 24, 2025

2025 journal article

Dietary protein source alters gut microbiota composition and function

ISME JOURNAL, 19(1).

By: J. Blakeley-Ruiz n, A. Bartlett n, A. McMillan n, A. Awan n, M. Walsh, A. Meyerhoffer n, S. Vintila n, J. Maier n ...

author keywords: gut microbiome; metaproteomics; metagenomics; dietary intervention; Mus musculus; mice
topics (OpenAlex): Gut microbiota and health; Nutritional Studies and Diet; Probiotics and Fermented Foods
Sources: ORCID, Web Of Science, NC State University Libraries
Added: March 22, 2025

2025 journal article

Why Does Overapplication of Phosphorus Fertilizers Occur: Insights from North Carolina Farmers

AGRICULTURE-BASEL, 15(6).

author keywords: phosphate; compounding conservatism; farmer behavior; P; soil test value; grower attitudes; fertilizer price sensitivity
topics (OpenAlex): Phosphorus and nutrient management; Soil and Water Nutrient Dynamics
Sources: ORCID, Web Of Science, NC State University Libraries
Added: March 12, 2025

2025 article

Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies

Bartlett, A., Blakeley-Ruiz, J. A., Richie, T., Theriot, C. M., & Kleiner, M. (2025, February 21). PROTEOMICS, Vol. 2.

topics (OpenAlex): Gut microbiota and health; Probiotics and Fermented Foods; Nutritional Studies and Diet
Sources: Web Of Science, NC State University Libraries
Added: March 3, 2025

2025 article

Construction of a Heterologous Pathway inEscherichia colifor Terephthalate Assimilation

Li, T., & Crook, N. (2025, February 28).

By: T. Li & N. Crook*

topics (OpenAlex): Bacterial Genetics and Biotechnology
Source: ORCID
Added: March 1, 2025

2025 journal article

Enhancing microalgae cell inactivation through hydrodynamic cavitation: Insights from flow cytometry analysis

WATER RESEARCH, 277.

By: D. Wang*, F. de los Reyes Iii & J. Ducoste*

author keywords: Cavitation; Flow cytometry; Microalgae; Cell viability; Reactive oxygen species (ROS); Chlorophyll fluorescence
MeSH headings : Microalgae / metabolism; Flow Cytometry; Hydrodynamics; Reactive Oxygen Species / metabolism
topics (OpenAlex): Algal biology and biofuel production; Aquatic Ecosystems and Phytoplankton Dynamics; Electrohydrodynamics and Fluid Dynamics
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 26, 2025

2025 journal article

Variation in a single allele drives divergent yield responses to elevated CO<sub>2</sub> between rice subspecies

NATURE COMMUNICATIONS, 16(1).

co-author countries: China 🇨🇳 United Kingdom of Great Britain and Northern Ireland 🇬🇧
MeSH headings : Oryza / genetics; Oryza / metabolism; Oryza / growth & development; Carbon Dioxide / metabolism; Alleles; Gene Expression Regulation, Plant; Nitrates / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Species Specificity; Plant Breeding
topics (OpenAlex): Plant responses to elevated CO2; Atmospheric chemistry and aerosols; Plant Parasitism and Resistance
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: February 10, 2025

2025 journal article

Pickering Emulsion for Enhanced Viability of Plant Growth Promoting Bacteria and Combined Delivery of Agrochemicals and Biologics

Advanced Functional Materials, 2.

By: M. Sohail n, J. Cheadle n, R. Khan n, H. Mane n, K. Samaher Salem n, K. Ernst n, A. San Miguel n, C. Opperman n ...

author keywords: biodegradable emulsifier; nonsporulating microbes; sustainable agriculture; multi-delivery platform
topics (OpenAlex): Pickering emulsions and particle stabilization; Biocrusts and Microbial Ecology; Algal biology and biofuel production
Sources: ORCID, Web Of Science, NC State University Libraries, Crossref
Added: February 5, 2025

2025 journal article

Long-term climate establishes functional legacies by altering microbial traits

ISME JOURNAL, 19(1).

author keywords: microbial traits; climate legacy effects; functional potential; metagenomics; microbial ecology
MeSH headings : Soil Microbiology; Carbon Cycle; Metagenomics; Soil / chemistry; Droughts; Climate; Bacteria / genetics; Bacteria / classification; Bacteria / metabolism; Bacteria / isolation & purification; Microbiota; Climate Change; Seasons; Carbon / metabolism
topics (OpenAlex): Microbial Community Ecology and Physiology; Soil Carbon and Nitrogen Dynamics; Gut microbiota and health
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
14. Life Below Water (Web of Science)
15. Life on Land (Web of Science)
Sources: ORCID, Web Of Science
Added: January 28, 2025

2025 journal article

Tree Species Controls Over Nitrogen and Phosphorus Cycling in a Wet Tropical Forest

The Bulletin of the Ecological Society of America.

By: A. Russell, S. Hall, R. Bedoya, S. Kivlin & C. Hawkes*

topics (OpenAlex): Forest ecology and management; Environmental Conservation and Management; Botany and Plant Ecology Studies
Source: ORCID
Added: January 28, 2025

2025 journal article

Temporal dynamics of climate sensitivity of litter decomposition in a semi-arid grassland

GEODERMA, 453.

By: Z. Li, F. Wang, Y. Wen, C. Ye, P. Wang, T. Bai, X. Gu, L. Guo ...

author keywords: Climate changes; The sensitivity of decomposition; Semi-arid grasslands; Temporal dynamics; 13C NMR; Litter quality
topics (OpenAlex): Soil Carbon and Nitrogen Dynamics; Peatlands and Wetlands Ecology; Climate change and permafrost
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science; OpenAlex)
14. Life Below Water (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: January 27, 2025

2025 article

An emerging fungal disease is spreading across the globe and affecting the blueberry industry

Bradshaw, M., Ivors, K., Broome, J. C., Carbone, I., Braun, U., Yang, S., … Pfister, D. H. (2025, January 8). NEW PHYTOLOGIST, Vol. 1.

By: M. Bradshaw n, K. Ivors*, J. Broome*, I. Carbone n, U. Braun*, S. Yang, E. Meng, B. Warres* ...

co-author countries: Canada 🇨🇦 Germany 🇩🇪 Spain 🇪🇸 Japan 🇯🇵 Peru 🇵🇪
author keywords: blueberries; co-evolution; emerging pathogens; fungi; powdery mildew
MeSH headings : Blueberry Plants / microbiology; Plant Diseases / microbiology; Phylogeny; Ascomycota / physiology; Ascomycota / pathogenicity; Ascomycota / genetics; Haplotypes / genetics
topics (OpenAlex): Powdery Mildew Fungal Diseases; Plant Pathogens and Fungal Diseases; Fungal Plant Pathogen Control
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: January 13, 2025

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