Center for Research in Scientific Computation - 2008

David, J., Ives, R. L., Tran, H., Bui, T., Read, M., Attarian, A., & Posth, M. (2008). Implementation of Computer Optimization for Design of Electron Guns. 'Proceedings of the 9th IEEE International Vacuum Electronics Conference. Presented at the 9th IEEE International Vacuum Electronics Conference, Monterey, CA.

Batzel, J. J., Novak, V., Kappel, F., Olufsen, M. S., & Tran, H. (Eds.). (2008). Special Issues: Short-term Cardiovascular–Respiratory Control Mechanisms. In Journal of Cardiovascular Engineering (Vol. 9, pp. 1–71).

Banks, H. T., Davidian, M., Hu, S., Kepler, G. M., & Rosenberg, E. S. (2008). Modelling HIV immune response and validation with clinical data. Journal of Biological Dynamics, 2(4), 357–385. https://doi.org/10.1080/17513750701813184

Ives, R. L., Bui, T., Attarian, A., Davis, S., Gadson, S., Tallis, W., … Posth, M. (2008). Implementation of computer optimization for design of electron guns. 2008 33rd International Conference on Infrared, Millimeter and Terahertz Waves. Presented at the 2008 33rd International Conference on Infrared, Millimeter and Terahertz Waves (IRMMW-THz 2008). https://doi.org/10.1109/icimw.2008.4665480

Ives, R. L., Bui, T., Read, M., David, J., Attarian, A., & Tran, H. (2008). Computer optimized design of electron guns. 2008 IEEE International Vacuum Electronics Conference. Presented at the 2008 IEEE International Vacuum Electronics Conference (IVEC). https://doi.org/10.1109/ivelec.2008.4556399

Kelley, C. T., Liao, L.-Z., Qi, L., Chu, M. T., Reese, J. P., & Winton, C. (2008). Projected Pseudo-Transient Continuation. SIAM J. Numer. Anal., 46(6), 3071–3083.

Fowler, K. R., Reese, J. P., Kees, C. E., Dennis, J. E., Kelley, C. T., Miller, C. T., … Kolda, T. G. (2008). A Comparison of Derivative-Free Optimization Methods for Groundwater Supply and Hydraulic Capture Problems. Advances in Water Resources, 31, 743–757. https://doi.org/10.1016/j.advwatres.2008.10.010

Pope, S. R., Ellwein, L. M., Zapata, C. I., Novak, V., Kelley, C. T., & Olufsen, M. S. (2008). Estimation and identification of parameters in a lumped cerebrovascular model. Math. Biosci. Eng., 6, 93–115.

Chertock, A., Kashdan, E., Kurganov, A., BenzoniGavage, S., & Serre, D. (2008). Propagation of Diffusing Pollutant by a Hybrid Eulerian–Lagrangian Method. In Hyperbolic Problems: Theory, Numerics, Applications (pp. 371–379). https://doi.org/10.1007/978-3-540-75712-2_33

Fibich, G., & Tsynkov, S. (2008). Numerical Solution of the Nonlinear Helmholtz Equation. In Effective Computational Methods for Wave Propagation (Vol. 5, pp. 37–62). https://doi.org/10.1201/9781420010879.ch2

Banks, H. T., & Davis, J. L. (2008). QUANTIFYING UNCERTAINTY IN THE ESTIMATION OF PROBABILITY DISTRIBUTIONS. MATHEMATICAL BIOSCIENCES AND ENGINEERING, 5(4), 647–667. https://doi.org/10.3934/mbe.2008.5.647

Kelley, C. T., Liao, L.-Z., Qi, L., Chu, M. T., Reese, J. P., & Winton, C. (2008). PROJECTED PSEUDOTRANSIENT CONTINUATION. SIAM JOURNAL ON NUMERICAL ANALYSIS, 46(6), 3071–3083. https://doi.org/10.1137/07069866X

Kim, E. J., Guilak, F., & Haider, M. A. (2008). The dynamic mechanical environment of the chondrocyte: A biphasic finite element model of cell-matrix interactions under cyclic compressive loading. Journal of Biomechanical Engineering, 130(6).

Chertock, A., Karni, S., & Kurganov, A. (2008). INTERFACE TRACKING METHOD FOR COMPRESSIBLE MULTIFLUIDS. ESAIM-MATHEMATICAL MODELLING AND NUMERICAL ANALYSIS-MODELISATION MATHEMATIQUE ET ANALYSE NUMERIQUE, 42(6), 991–1019. https://doi.org/10.1051/m2an:2008036

Tan, Z., Le, D. V., Li, Z., Lim, K. M., & Khoo, B. C. (2008). An immersed interface method for solving incompressible viscous flows with piecewise constant viscosity across a moving elastic membrane. JOURNAL OF COMPUTATIONAL PHYSICS, 227(23), 9955–9983. https://doi.org/10.1016/j.jcp.2008.08.013

Chertock, A., & Kurganov, A. (2008). A second-order positivity preserving central-upwind scheme for chemotaxis and haptotaxis models. NUMERISCHE MATHEMATIK, 111(2), 169–205. https://doi.org/10.1007/s00211-008-0188-0

Baruch, G., Fibich, G., & Tsynkov, S. (2008). Simulations of the nonlinear Helmholtz equation: arrest of beam collapse, nonparaxial solitons and counter-propagating beams. Optics Express, 16(17), 13323. https://doi.org/10.1364/OE.16.013323

Banks, H. T., Hood, J. B., & Medhin, N. G. (2008). A molecular based model for polymer viscoelasticity: Intra- and inter-molecular variability. APPLIED MATHEMATICAL MODELLING, 32(12), 2753–2767. https://doi.org/10.1016/j.apm.2007.09.018

Banks, H. T., Hood, J. B., Medhin, N. G., & Samuels, J. S., Jr. (2008). A stick-slip/Rouse hybrid model for viscoelasticity in polymers. NONLINEAR ANALYSIS-REAL WORLD APPLICATIONS, 9(5), 2128–2149. https://doi.org/10.1016/j.nonrwa.2007.06.015

Ito, K., Qiao, Z., & Toivanen, J. (2008). A domain decomposition solver for acoustic scattering by elastic objects in layered media. JOURNAL OF COMPUTATIONAL PHYSICS, 227(19), 8685–8698. https://doi.org/10.1016/j.jcp.2008.06.015

Chertock, A., Gottlieb, D., & Solomonoff, A. (2008). Modified Optimal Prediction and its Application to a Particle-Method Problem. JOURNAL OF SCIENTIFIC COMPUTING, 37(2), 189–201. https://doi.org/10.1007/s10915-008-9242-4

Braun, T. R., & Smith, R. C. (2008). High Speed Model Implementation and Inversion Techniques for Ferroelectric and Ferromagnetic Transducers. JOURNAL OF INTELLIGENT MATERIAL SYSTEMS AND STRUCTURES, 19(11), 1295–1310. https://doi.org/10.1177/1045389X07085638

Chertock, A., & Kurganov, A. (2008). A SIMPLE EULERIAN FINITE-VOLUME METHOD FOR COMPRESSIBLE FLUIDS IN DOMAINS WITH MOVING BOUNDARIES. COMMUNICATIONS IN MATHEMATICAL SCIENCES, 6(3), 531–556. https://doi.org/10.4310/CMS.2008.v6.n3.a1

Segal, R. A., Kepler, G. M., & Kimbell, J. S. (2008). Effects of differences in nasal anatomy on airflow distribution: A comparison of four individuals at rest. ANNALS OF BIOMEDICAL ENGINEERING, 36(11), 1870–1882. https://doi.org/10.1007/s10439-008-9556-2

Wan, X., Li, Z., & Lubkin, S. R. (2008). Mechanics of mesenchymal contribution to clefting force in branching morphogenesis. BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 7(5), 417–426. https://doi.org/10.1007/s10237-007-0105-y

Ito, K., & Qiao, Z. (2008). A high order finite difference scheme for the Stokes equations. Moving interface problems and applications in fluid dynamics, 466, 35–51. https://doi.org/10.1090/conm/466/09115

Xie, H., Ito, K., Li, Z., & Toivanen, J. (2008). A finite element method for interface problems with locally modified triangulations. Moving interface problems and applications in fluid dynamics, 466, 179–190. https://doi.org/10.1090/conm/466/09122

Zhang, L.-H., Kelley, C. T., & Liao, L.-Z. (2008). A continuous {N}ewton-type method for unconstrained optimization. Pacific Journal of Optimization, 4(2), 259–277.

Ito, K., & Qiao, Z. (2008). A high order compact MAC finite difference scheme for the Stokes equations: Augmented variable approach. JOURNAL OF COMPUTATIONAL PHYSICS, 227(17), 8177–8190. https://doi.org/10.1016/j.jcp.2008.05.021

Banks, H. T., Karr, A. F., Nguyen, H. K., & Samuels, J. R., Jr. (2008). Sensitivity to noise variance in a social network dynamics model. QUARTERLY OF APPLIED MATHEMATICS, 66(2), 233–247. https://doi.org/10.1090/S0033-569X-08-01124-0

Ellwein, L. M., Tran, H. T., Zapata, C., Novak, V., & Olufsen, M. S. (2008). Sensitivity analysis and model assessment: Mathematical models for arterial blood flow and blood pressure. CARDIOVASCULAR ENGINEERING, 8(2), 94–108. https://doi.org/10.1007/s10558-007-9047-3

Olufsen, M. S., Alston, A. V., Tran, H. T., Ottesen, J. T., & Novak, V. (2008). Modeling heart rate regulation - Part I: Sit-to-stand versus head-up tilt. CARDIOVASCULAR ENGINEERING, 8(2), 73–87. https://doi.org/10.1007/s10558-007-9050-8

Batzel, J. J., Novak, V., Kappel, F., Olufsen, M. S., & Tran, H. T. (2008, March). Introduction to the special issues: Short-term cardiovascular-respiratory control mechanisms. CARDIOVASCULAR ENGINEERING, Vol. 8, pp. 1–4. https://doi.org/10.1007/s10558-007-9053-5

Fink, M., Batzel, J. J., & Tran, H. (2008). A respiratory system model: Parameter estimation and sensitivity analysis. CARDIOVASCULAR ENGINEERING, 8(2), 120–134. https://doi.org/10.1007/s10558-007-9051-7

Qasimov, H., & Tsynkov, S. (2008). Lacunae based stabilization of PMLs. Journal of Computational Physics, 227(15), 7322–7345. https://doi.org/10.1016/j.jcp.2008.04.018

Banks, H. T., Banks, J. E., Joyner, S. L., & Stark, J. D. (2008). Dynamic models for insect mortality due to exposure to insecticides. MATHEMATICAL AND COMPUTER MODELLING, 48(1-2), 316–332. https://doi.org/10.1016/j.mcm.2007.10.005

Fowler, K. R., Reese, J. P., Kees, C. E., Dennis, J. E., Jr., Kelley, C. T., Miller, C. T., … Kolda, T. G. (2008). Comparison of derivative-free optimization methods for groundwater supply and hydraulic capture community problems. ADVANCES IN WATER RESOURCES, 31(5), 743–757. https://doi.org/10.1016/j.advwatres.2008.01.010

Rutka, V., & Li, Z. (2008). An explicit jump immersed interface method for two-phase Navier-Stokes equations with interfaces. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, Vol. 197, pp. 2317–2328. https://doi.org/10.1016/j.cma.2007.12.016

Chen, G., Li, Z., & Lin, P. (2008). A fast finite difference method for biharmonic equations on irregular domains and its application to an incompressible Stokes flow. ADVANCES IN COMPUTATIONAL MATHEMATICS, 29(2), 113–133. https://doi.org/10.1007/s10444-007-9043-6

Banks, H. T. (2008). [Review of A brief review of some approaches to hysteresis in viscoelastic polymers]. NONLINEAR ANALYSIS-THEORY METHODS & APPLICATIONS, 69(3), 807–815. https://doi.org/10.1016/j.na.2008.02.103

Banks, H. T., Medhin, N. G., & Pinter, G. A. (2008). Modeling of viscoelastic shear: A nonlinear stick-slip formulation. Dynamic Systems and Applications, 17(2), 383–405.

Marucho, M., Kelley, C. T., & Pettitt, B. M. (2008). Solutions of the optimized closure integral equation theory: Heteronuclear polyatomic fluids. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 4(3), 385–396. https://doi.org/10.1021/ct700202h

Banks, H. T., & Luke, N. S. (2008). Modelling of propagating shear waves in biotissue employing an internal variable approach to dissipation. Communications in Computational Physics, 3(3), 603–640.

Sutton, K. L., Banks, H. T., & Castillo-Chavez, C. (2008). Estimation of invasive pneumococcal disease dynamics parameters and the impact of conjugate vaccination in Australia. Mathematical Biosciences and Engineering, 5(1), 175–204. https://doi.org/10.3934/mbe.2008.5.175

Banks, J. E., Dick, L. K., Banks, H. T., & Stark, J. D. (2008). Time-varying vital rates in ecotoxicology: Selective pesticides and aphid population dynamics. ECOLOGICAL MODELLING, 210(1-2), 155–160. https://doi.org/10.1016/j.ecolmodel.2007.07.022

Oates, W. S., & Smith, R. C. (2008). Nonlinear optimal control techniques for vibration attenuation using magnetostrictive actuators. JOURNAL OF INTELLIGENT MATERIAL SYSTEMS AND STRUCTURES, 19(2), 193–209. https://doi.org/10.1177/1045389X06074159

Gong, Y., Li, B., & Li, Z. (2008). Immersed-interface finite-element methods for elliptic interface problems with nonhomogeneous jump conditions. SIAM JOURNAL ON NUMERICAL ANALYSIS, 46(1), 472–495. https://doi.org/10.1137/060666482

Qiao, Z. H. (2008). Numerical investigations of the dynamical behaviors and instabilities for the Gierer-Meinhardt system. Communications in Computational Physics, 3(2), 406–426.

Yokley, K. A., Tran, H., & Schlosser, P. M. (2008). Sensory irritation response in rats: Modeling, analysis and validation. BULLETIN OF MATHEMATICAL BIOLOGY, 70(2), 555–588. https://doi.org/10.1007/s11538-007-9268-z

David, J., Ives, R. L., Tran, H. T., Bui, T., & Read, M. E. (2008). Computer optimized design of electron guns. IEEE TRANSACTIONS ON PLASMA SCIENCE, 36(1), 156–168. https://doi.org/10.1109/TPS.2007.913884