Center for Research in Scientific Computation - 2013

Tran, H., Attarian, A., Danis, G., Gronsbell, J., & Iervolino, G. (2013). A Comparison of Feature Selection and Classification Algorithms in Identifying Baseball Pitches. International MultiConference of Engineers and Computer Scientists : IMECS 2013 : 13-15 March, 2013, the Royal Garden Hotel, Kowloon, Hong Kong, 263–268.

Banks, H. T., & Rehm, K. L. (2013). Experimental design for vector output systems. Inverse Problems in Science and Engineering, 22(4), 557–590. https://doi.org/10.1080/17415977.2013.797973

Greenwald, S. E., Banks, H. T., Birch, M. J., Brewin, M. P., Hu, S., Kenz, Z. R., … Whiteman, J. R. (2013). Acoustic localisation of coronary artery stenosis: Wave propagation in soft tissue mimicking gels. Artery Research, 7(3-4), 124. https://doi.org/10.1016/J.ARTRES.2013.10.081

Shaw, S., Whiteman, J. R., Greenwald, S. E., Kruse, C., Banks, H. T., Birch, M. J., … Brewin, M. P. (2013). Towards computational diagnosis of coronary artery disease. Artery Research, 7(3-4), 123–124. https://doi.org/10.1016/J.ARTRES.2013.10.079

Banks, H. T., & Rehm, K. L. (2013). Experimental design for distributed parameter vector systems. Applied Mathematics Letters, 26(1), 10–14. https://doi.org/10.1016/j.aml.2012.08.003

Tran, H., Williams, N., & Olufsen, M. S. (2013). Cardiovascular Dynamics during Head-up Tilt assessed Via a Pulsatile and Non-pulsatile Model. Proceedings of the 3rd International Conference on Simulation and Modeling Methodologies, Technologies and Applications, 1, 673–680. https://doi.org/10.5220/0004624006730680

Chertock, A., Kurganov, A., Polizzi, A., & Timofeyev, I. (2013). PEDESTRIAN FLOW MODELS WITH SLOWDOWN INTERACTIONS. Mathematical Models and Methods in Applied Sciences, 24(02), 249–275. https://doi.org/10.1142/s0218202513400083

Willert, J., & Kelley, C. T. (2013). Efficient Solutions to the NDA-NCA Low-Order Eigenvalue Problem. Proceedings of International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering, 2725–2735.

Costolanski, A. S., Kelley, C. T., Howell, G. W., & Salinger, A. G. (2013). An Efficient Parallel Solution to the Wigner-Poisson Equations. In F. Liu (Ed.), High Performance Computing Symposium (HPC 2013), Simulation Series Vol. 45, Society for Modeling & Simulation International (Vol. 45, pp. 773–780). Curran Associates Inc.

Britt, S., Medvinsky, M., Turkel, E., & Tsynkov, S. (2013). High Order Numerical Simulation of the Transmission and 
             Scattering of Waves Using the Method of Difference Potentials. In Proceedings of the International Conference Difference Schemes and Applications 
             in honor of the 90-th Birthday of Prof. V. S. Ryaben'kii, Moscow, Russia, May 27--31, 2013 (pp. 33–34). Retrieved from https://stsynkov.math.ncsu.edu/publications/Tsynkov_abstract_for_Ryabenkii-90.pdf

Briggs, E., Hodak, M., Rose, F., Lu, W., Kelley, C. T., & Bernholc, J. (2013). Mechanism of Drug Action on Alzheimer's Disease Protein. Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis. Presented at the Denver CO. Denver CO: IEEE Computer Society Press.

Willert, J., Kelley, C. T., Knoll, D. A., & Park, H. K. (2013). Hybrid Deterministic/Monte Carlo Neutronics. SIAM J. Sci. Comp., Vol. 35, pp. S62–S83. https://doi.org/http://dx.doi.org/10.1137/120880021

Kelley, C. T., & Liao, L.-Z. (2013). Explicit Pseudo-Transient Continuation. Pacific J. Opt., Vol. 9, pp. 77–91.

Willert, J., Kelley, C. T., Knoll, D. A., & Park, H. K. (2013). A Hybrid Approach to the Neutron Transport k-Eigenvalue Problem using NDA-based Algorithms. Proceedings of International Conference on Mathematics and Computational Methods Applied to Nuclear Science & Engineering, 1934–1941.

Kenz, Z. R., Banks, H. T., & Smith, R. C. (2013). Comparison of Frequentist and Bayesian Confidence Analysis Methods on a Viscoelastic Stenosis Model. SIAM/ASA Journal on Uncertainty Quantification, 1(1), 348–369. https://doi.org/10.1137/130917867

Matthews, J. L., Smith, R. C., & Fiscus, E. L. (2013). CONFIDENCE INTERVAL ESTIMATION FOR AN EMPIRICAL MODEL QUANTIFYING THE EFFECT OF SOIL MOISTURE AND PLANT DEVELOPMENT ON SOYBEAN (GLYCINE MAX (L.) MERR.) LEAF CONDUCTANCE. International Journal of Pure and Apllied Mathematics, 83(3). https://doi.org/10.12732/ijpam.v83i3.6

Kansa, E., Shumlak, U., & Tsynkov, S. (2013). Discrete Calderon’s projections on parallelepipeds and their application to computing exterior magnetic fields for FRC plasmas. Journal of Computational Physics, 234, 172–198. https://doi.org/10.1016/j.jcp.2012.09.033

Banks, H. T., Cintron-Arias, A., & Kappel, F. (2013). Parameter selection methods in inverse problem formulation. Mathematical Modeling and Validation in Physiology: Applications to the Cardiovascular and Respiratory Systems, 2064, 43–73.

Attarian, A., Batzel, J. J., Matzuka, B., & Tran, H. (2013). Application of the Unscented Kalman Filtering to Parameter Estimation. MATHEMATICAL MODELING AND VALIDATION IN PHYSIOLOGY: APPLICATIONS TO THE CARDIOVASCULAR AND RESPIRATORY SYSTEMS, Vol. 2064, pp. 75–88. https://doi.org/10.1007/978-3-642-32882-4_4

Wang, C., Wang, J., Cai, Q., Li, Z., Zhao, H.-K., & Luo, R. (2013). Exploring accurate Poisson-Boltzmann methods for biomolecular simulations. COMPUTATIONAL AND THEORETICAL CHEMISTRY, 1024, 34–44. https://doi.org/10.1016/j.comptc.2013.09.021

Willert, J., Kelley, C. T., Knoll, D. A., & Park, H. (2013). Scalable Hybrid Deterministic/Monte Carlo Neutronics Simulations in Two Space Dimensions. 2013 12TH INTERNATIONAL SYMPOSIUM ON DISTRIBUTED COMPUTING AND APPLICATIONS TO BUSINESS, ENGINEERING & SCIENCE (DCABES), pp. 7–10. https://doi.org/10.1109/dcabes.2013.8

Banks, H. T., Kapraun, D. F., Thompson, W. C., Peligero, C., Argilaguet, J., & Meyerhans, A. (2013). A novel statistical analysis and interpretation of flow cytometry data. JOURNAL OF BIOLOGICAL DYNAMICS, 7(1), 96–132. https://doi.org/10.1080/17513758.2013.812753

Chertock, A., Kurganov, A., Qu, Z., & Wu, T. (2013). Three-Layer Approximation of Two-Layer Shallow Water Equations. MATHEMATICAL MODELLING AND ANALYSIS, 18(5), 675–693. https://doi.org/10.3846/13926292.2013.869269

Crews, J. H., McMahan, J. A., Smith, R. C., & Hannen, J. C. (2013). Quantification of parameter uncertainty for robust control of shape memory alloy bending actuators. SMART MATERIALS AND STRUCTURES, 22(11). https://doi.org/10.1088/0964-1726/22/11/115021

Willert, J., Kelley, C. T., Knoll, D. A., & Park, H. (2013). HYBRID DETERMINISTIC/MONTE CARLO NEUTRONICS. SIAM JOURNAL ON SCIENTIFIC COMPUTING, 35(5), S62–S83. https://doi.org/10.1137/120880021

Li, Z., & Song, P. (2013). Adaptive mesh refinement techniques for the immersed interface method applied to flow problems. COMPUTERS & STRUCTURES, 122, 249–258. https://doi.org/10.1016/j.compstruc.2013.03.013

Britt, D. S., Tsynkov, S. V., & Turkel, E. (2013). A High-Order Numerical Method for the Helmholtz Equation with Nonstandard Boundary Conditions. SIAM Journal on Scientific Computing, 35(5), A2255–A2292. https://doi.org/10.1137/120902689

Wyers, E. J., Steer, M. B., Kelley, C. T., & Franzon, P. D. (2013). A Bounded and Discretized Nelder-Mead Algorithm Suitable for RFIC Calibration. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 60(7), 1787–1799. https://doi.org/10.1109/tcsi.2012.2230496

Blaircum, L. V., & Smith, R. (2013). The homogenized energy model for characterizing magnetization and strains in ferromagnetic materials. Proceedings of the ASME Conference on Smart Materials, Adaptive Structures and Intelligent Systems, vol 1, 489–496. https://doi.org/10.1115/smasis2012-8137

Kavouras, A., Georgakis, C., Kelley, C. T., Siettos, C., & Kevrekidis, I. G. (2013). Steady states for chemical process plants: A legacy code, time-stepping approach. AICHE JOURNAL, 59(9), 3308–3321. https://doi.org/10.1002/aic.14199

McMahan, J. A., & Smith, R. C. (2013). Sliding mode control for inverse compensated hysteretic smart systems. Proceedings of the ASME Conference on Smart Materials, Adaptive Structures and Intelligent Systems, vol 1, 335–344.

Hu, Z. Z., Smith, R. C., Burch, N., Hays, M., & Oates, W. S. (2013). Homogenized energy model and markov chain Monte Carlo simulations for macro fiber composites operating in broadband regimes. Proceedings of the ASME Conference on Smart Materials, Adaptive Structures and Intelligent Systems, vol 1, 321–327.

Crews, J. H., Smith, R., & Hannen, J. C. (2013). Development of robust control algorithms for shape memory alloy bending actuators. Proceedings of the ASME Conference on Smart Materials, Adaptive Structures and Intelligent Systems, vol 1, 391–400. https://doi.org/10.1115/smasis2012-7989

Wang, Q., Zhang, Z., & Li, Z. (2013). A Fourier finite volume element method for solving two-dimensional quasi-geostrophic equations on a sphere. APPLIED NUMERICAL MATHEMATICS, 71, 1–13. https://doi.org/10.1016/j.apnum.2013.03.007

McMahan, J. A., Crews, J. H., & Smith, R. (2013). Inversion algorithms for the homogenized energy model for hysteresis in ferroelectric and shape memory alloy compounds. Journal of Intelligent Material Systems and Structures, 24(15), 1796–1821. https://doi.org/10.1177/1045389x12471868

Banks, H. T., Catenacci, J., & Hu, S. (2013). A Comparison of Stochastic Systems with Different Types of Delays. STOCHASTIC ANALYSIS AND APPLICATIONS, 31(6), 913–955. https://doi.org/10.1080/07362994.2013.806217

Matthews, J. L., Fiscus, E. L., Smith, R. C., & Heitman, J. L. (2013). Quantifying Plant Age and Available Water Effects on Soybean Leaf Conductance. AGRONOMY JOURNAL, 105(1), 28–36. https://doi.org/10.2134/agronj2012.0263

Banks, H. T., Hu, S. H., Kenz, Z. R., Kruse, C., Shaw, S., Whiteman, J. R., … Birch, M. J. (2013). Material parameter estimation and hypothesis testing on a 1D viscoelastic stenosis model: Methodology. Journal of Inverse and Ill-Posed Problems, 21(1), 25–57.

Kelley, C. T., & Liao, L. Z. (2013). Explicit pseudo-transient continuation. Pacific Journal of Optimization, 9(1), 77–91.

Song, P., Xue, J., & Li, Z. (2013). Simulation of Longitudinal Exposure Data with Variance-Covariance Structures Based on Mixed Models. RISK ANALYSIS, 33(3), 469–479. https://doi.org/10.1111/j.1539-6924.2012.01869.x

Banks, H. T., Choi, A., Huffman, T., Nardini, J., Poag, L., & Thompson, W. C. (2013). Quantifying CFSE label decay in flow cytometry data. APPLIED MATHEMATICS LETTERS, 26(5), 571–577. https://doi.org/10.1016/j.aml.2012.12.010

Ellwein, L. M., Pope, S. R., Xie, A., Batzel, J. J., Kelley, C. T., & Olufsen, M. S. (2013). Patient-specific modeling of cardiovascular and respiratory dynamics during hypercapnia. MATHEMATICAL BIOSCIENCES, 241(1), 56–74. https://doi.org/10.1016/j.mbs.2012.09.003

Miller, C. T., Dawson, C. N., Farthing, M. W., Hou, T. Y., Huang, J., Kees, C. E., … Langtangen, H. P. (2013). Numerical simulation of water resources problems: Models, methods, and trends. ADVANCES IN WATER RESOURCES, 51, 405–437. https://doi.org/10.1016/j.advwatres.2012.05.008

Gilman, M., Smith, E., & Tsynkov, S. (2013). Reduction of ionospheric distortions for spaceborne synthetic aperture radar with the help of image registration. Inverse Problems, 29(5), 054005. https://doi.org/10.1088/0266-5611/29/5/054005

Medvinsky, M., Tsynkov, S., & Turkel, E. (2013). High order numerical simulation of the transmission and scattering of waves using the method of difference potentials. JOURNAL OF COMPUTATIONAL PHYSICS, 243, 305–322. https://doi.org/10.1016/j.jcp.2013.03.014

Botello-Smith, W. M., Liu, X., Cai, Q., Li, Z., Zhao, H., & Luo, R. (2013). Numerical Poisson-Boltzmann model for continuum membrane systems. CHEMICAL PHYSICS LETTERS, 555, 274–281. https://doi.org/10.1016/j.cplett.2012.10.081

Liu, X., Wang, C., Wang, J., Li, Z., Zhao, H., & Luo, R. (2013). Exploring a charge-central strategy in the solution of Poisson's equation for biomolecular applications. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 15(1), 129–141. https://doi.org/10.1039/c2cp41894k

Turkel, E., Gordon, D., Gordon, R., & Tsynkov, S. (2013). Compact 2D and 3D sixth order schemes for the Helmholtz equation with variable wave number. Journal of Computational Physics, 232(1), 272–287. https://doi.org/10.1016/j.jcp.2012.08.016