Microbiology - 2016

Hassan, H. (2016). Designer Probiotic Lactobacilli for use in Farm Animals and Methods for Enrichment and Isolation from any Animal Species or Human (Invention Disclosure No. 17-063).

Hassan, H. (2016). Utilization of Hydroxyl Radicalfor Accelerated Shelf-life Testing (Invention Disclosure No. 16-275).

Hassan, H. (2016, October). Use of Probiotics and prebiotics in Poultry. Presented at the Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.

Hassan, H. M., & Troxell, S. B. (2016). Engineered Salmonella Serovar Typhimurium Strains, Compositions Thereof, and Methods of Use (US Provisional Patent No. 62/368,507).

Hassan, H. M. (2016). The Chicken Gut Microbiome and Salmonella. Presented at the USDA-NIFA –Annual Program Directors Meeting, St. Louis, MO.

Rezvani, M., Mendoza, M., Koci, M. D., Daron, C., Levy, J., & Hassan, H. M. (2016). Draft Genome Sequences of Lactobacillus animalis Strain P38 and Lactobacillus reuteri Strain P43 Isolated from Chicken Cecum. Genome Announcements, 4(6). https://doi.org/10.1128/genomeA.01229-16

Troxell, B., & Hassan, H. M. (2016). Interplay Between O2 and Iron in Gene Expression: Environmental Sensing by FNR, ArcA, and Fur in Bacteria. In F. J. de Bruijn (Ed.), Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, I&II (pp. 1079–1089). https://doi.org/10.1002/9781119004813.ch105

Ballou, A. L., Ali, R. A., Mendoza, M. A., Ellis, J. C., Hassan, H. M., Croom, W. J., & Koci, M. D. (2016). Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity. Frontiers in Veterinary Science, 3. https://doi.org/10.3389/fvets.2016.00002

Rezvani, M., Mendoza, M., Koci, M. D., Daron, C., Levy, J., & Hassan, H. M. (2016). Draft Genome Sequence of Lactobacillus crispatus C25 Isolated from Chicken Cecum. Genome Announcements, 4(6). https://doi.org/10.1128/genomeA.01223-16

Troxell, B., Fink, R. C., Dickey, A. N., Scholl, E. H., & Hassan, H. M. (2016). Complete Genome Sequence of NC983, a Live Attenuated Strain of Salmonella enterica Serovar Typhimurium. Genome Announcements, 4(5). https://doi.org/10.1128/genomeA.01074-16

Abraham, J., Bousquet, A.-C., Bruff, E., Carson, N., Clark, A., Connell, A., … Miller, E. S. (2016). Paenibacillus larvae
                    Phage Tripp Genome Has 378-Base-Pair Terminal Repeats. Genome Announcements, 4(1). https://doi.org/10.1128/genomea.01498-15

Harrell, E. A., & Miller, E. S. (2016). Genome Sequence of
                    Aeromicrobium erythreum
                    NRRL B-3381, an Erythromycin-Producing Bacterium of the
                    Nocardioidaceae. Genome Announcements, 4(2). https://doi.org/10.1128/genomea.00300-16

Monteagudo-Mera, A., Arthur, J. C., Jobin, C., Keku, T., Bruno-Barcena, J. M., & Azcarate-Peril, M. A. (2016). High purity galacto-oligosaccharides enhance specific Bifidobacterium species and their metabolic activity in the mouse gut microbiome. Beneficial Microbes, 7(2), 247–264. https://doi.org/10.3920/bm2015.0114

Noecker, C., Eng, A., Srinivasan, S., Theriot, C. M., Young, V. B., Jansson, J. K., … Borenstein, E. (2016). Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation. MSystems, 1(1). https://doi.org/10.1128/msystems.00013-15

Winston, J. A., Thanissery, R., Montgomery, S. A., & Theriot, C. M. (2016). Cefoperazone-treated Mouse Model of Clinically-relevant Clostridium difficile Strain R20291. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, (118). https://doi.org/10.3791/54850

List, G., Mashayekhi, M., Bertini, R. L., & Nevers, B. (2016). Development of a Transportation System Simulation Manual Framework From Theory to Practice. TRANSPORTATION RESEARCH RECORD, (2561), 45–52. https://doi.org/10.3141/2561-06

Somalinga, V., Buhrman, G., Arun, A., Rose, R. B., & Grunden, A. M. (2016). A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface. PLOS ONE, 11(12). https://doi.org/10.1371/journal.pone.0168022

Theriot, C. M., Bowman, A. A., & Young, V. B. (2016). Antibiotic-Induced Alterations of the Gut Microbiota Alter Secondary Bile Acid Production and Allow for
                    Clostridium difficile
                    Spore Germination and Outgrowth in the Large Intestine. MSphere, 1(1). https://doi.org/10.1128/msphere.00045-15

Dogra, P., Miller-Kittrell, M., Pitt, E., Jackson, J. W., Masi, T., Copeland, C., … Sparer, T. (2016). A little cooperation helps murine cytomegalovirus (MCMV) go a long way: MCMV co-infection rescues a chemokine salivary gland defect. Journal of General Virology, 97, 2957–2972.

Mathews, S. L., Smithson, C. E., & Grunden, A. M. (2016). Purification and characterization of a recombinant laccase-like multi-copper oxidase from Paenibacillus glucanolyticus SLM1. JOURNAL OF APPLIED MICROBIOLOGY, 121(5), 1335–1345. https://doi.org/10.1111/jam.13241

Savage, A. M., Hills, J., Driscoll, K., Fergus, D. J., Grunden, A. M., & Dunn, R. R. (2016). Microbial diversity of extreme habitats in human homes. PEERJ, 4. https://doi.org/10.7717/peerj.2376

O'Flaherty, S., & Klaenhammer, T. R. (2016). Multivalent Chromosomal Expression of the Clostridium botulinum Serotype A Neurotoxin Heavy-Chain Antigen and the Bacillus anthracis Protective Antigen in Lactobacillus acidophilus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(20), 6091–6101. https://doi.org/10.1128/aem.01533-16

Winston, J. A., & Theriot, C. M. (2016). Impact of microbial derived secondary bile acids on colonization resistance against Clostridium difficile in the gastrointestinal tract. ANAEROBE, 41, 44–50. https://doi.org/10.1016/j.anaerobe.2016.05.003

Douglas, G. L., Azcarate-Peril, M. A., & Klaenhammer, T. R. (2016). Genomic evolution of lactic acid bacteria: From single gene function to the pan-genome. Biotechnology of Lactic Acid Bacteria: Novel Applications, 2nd Edition, 32–54. https://doi.org/10.1002/9781118868386.ch3

Alayli, F., & Scholle, F. (2016). Dengue virus NS1 enhances viral replication and pro-inflammatory cytokine production in human dendritic cells. VIROLOGY, 496, 227–236. https://doi.org/10.1016/j.virol.2016.06.008

Johnson, B. R., & Klaenhammer, T. R. (2016). AcmB Is an S-Layer-Associated beta-N-Acetylglucosaminidase and Functional Autolysin in Lactobacillus acidophilus NCFM. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(18), 5687–5697. https://doi.org/10.1128/aem.02025-16

Hymes, J. P., & Klaenhammer, T. R. (2016). [Review of Stuck in the Middle: Fibronectin-Binding Proteins in Gram-Positive Bacteria]. FRONTIERS IN MICROBIOLOGY, 7. https://doi.org/10.3389/fmicb.2016.01504

Crespo, M. D., Altermann, E., Olson, J., Miller, W. G., Chandrashekhar, K., & Kathariou, S. (2016). Novel plasmid conferring kanamycin and tetracycline resistance in the turkey-derived Campylobacter jejuni strain 11601MD. PLASMID, 86, 32–37. https://doi.org/10.1016/j.plasmid.2016.06.001

Stanley, S. L., Scholle, F., Zhu, J., Lu, Y., Zhang, X., Situ, X., & Ghiladi, R. A. (2016). Photosensitizer-Embedded Polyacrylonitrile Nanofibers as Antimicrobial Non-Woven Textile. NANOMATERIALS, 6(4). https://doi.org/10.3390/nano6040077

Hymes, J. P., Johnson, B. R., Barrangou, R., & Klaenhammer, T. R. (2016). Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(9), 2676–2685. https://doi.org/10.1128/aem.00024-16

Celebioglu, H. U., Ejby, M., Majumder, A., Kobler, C., Goh, Y. J., Thorsen, K., … Svensson, B. (2016). Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose - an emerging prebiotic. PROTEOMICS, 16(9), 1361–1375. https://doi.org/10.1002/pmic.201500212

Mathews, S. L., Grunden, A. M., & Pawlak, J. (2016). Degradation of lignocellulose and lignin by Paenibacillus glucanolyticus. INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 110, 79–86. https://doi.org/10.1016/j.ibiod.2016.02.012

Jayaraman, P. A., Devlin, A. A., Miller, J. C., & Scholle, F. (2016). The adaptor molecule Trif contributes to murine host defense during Leptospiral infection. IMMUNOBIOLOGY, 221(9), 964–974. https://doi.org/10.1016/j.imbio.2016.05.006

Kaur, A., Oberhofer, M., Juzumaite, M., Raja, H. A., Gulledge, T. V., Kao, D. N., … Cech, N. B. (2016). Secondary metabolites from fungal endophytes of Echinacea purpurea suppress cytokine secretion by macrophage-type cells. Natural Product Communications, 11(8), 1143–1146. https://doi.org/10.1177/1934578x1601100827

Durmaz, E., Hu, Y., Aroian, R. V., & Klaenhammer, T. R. (2016). Intracellular and Extracellular Expression of Bacillus thuringiensis Crystal Protein Cry5B in Lactococcus lactis for Use as an Anthelminthic. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(4), 1286–1294. https://doi.org/10.1128/aem.02365-15

Geng, X.-M., Liu, X., Ji, M., Hoffmann, W. A., Grunden, A., & Xiang, Q.-Y. J. (2016). Enhancing Heat Tolerance of the Little Dogwood Cornus canadensis L.f. with Introduction of a Superoxide Reductase Gene from the Hyperthermophilic Archaeon Pyrococcus furiosus. FRONTIERS IN PLANT SCIENCE, 7. https://doi.org/10.3389/fpls.2016.00026

Noar, J. D., & Bruno-Barcena, J. M. (2016). [Review of Protons and pleomorphs: aerobic hydrogen production in Azotobacters]. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 32(2). https://doi.org/10.1007/s11274-015-1980-5

Johnson, B. R., Hymes, J., Sanozky-Dawes, R., Henriksen, E. D. C., Barrangou, R., & Klaenhammer, T. R. (2016). Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(1), 134–145. https://doi.org/10.1128/aem.01968-15

Dagher, S. F., & Bruno-Barcena, J. M. (2016). A novel N-terminal region of the membrane beta-hexosyltransferase: its role in secretion of soluble protein by Pichia pastoris. MICROBIOLOGY-SGM, 162(1), 23–34. https://doi.org/10.1099/mic.0.000211