Plant and Microbial Biology - 2011 Pakala, S., Thomas, E., Rodriguez-Carres, M., Dean, R., Schwartz, D., Zhou, S., … Cubeta, M. A. (2011). Sequencing and assembling the mitochondrial DNA genome of the soil fungus Rhizoctonia solani. Proceedings of the 26th Fungal Genetics Conference. Presented at the 26th Fungal Genetics Conference, Asilomar, CA. Thomas, E., & Thropp, B. R. (2011). Some Effects of Abiotic Stress on Infection of Dyer's Woad (Isatis tinctoria L.) by Puccinia thlaspeos C. Schub.: Implications for Biological Control. American Journal of Agricultural and Biological Sciences, 6(1), 45–51. https://doi.org/10.3844/ajabssp.2011.45.51 Kropp, B. R., & Thomas, E. (2011). Suppression of Salicylic Acid-Mediated Plant Defense Responses During Initial Infection of Dyer's Woad by Puccinia thlaspeos. American Journal of Agricultural and Biological Sciences, 6(3), 307–316. https://doi.org/10.3844/ajabssp.2011.307.316 Krings, A. (2011). Matelea pakaraimensis (Apocynaceae, Asclepiadoideae), a new species in the Matelea stenopetala complex from Guyana. Journal of the Botanical Research Institute of Texas, 5(1), 101–104. Krings, A. (2011). Pistacia chinensis (Anacardiaceae) naturalized in North Carolina, U.S.A. Journal of the Botanical Research Institute of Texas, 5(2), 867–869. Krings, A. (2011). Synopsis of Matelea s.l. (Apocynaceae, Asclepiadoideae) in Trinidad, Tobago, and the ABC Islands. Journal of the Botanical Research Institute of Texas, 5(2), 475–483. CARACTERÍSTICAS MORFOLÓGICAS Y QUÍMICAS DE 3 CULTIVARES DE MAÍZ MORADO (Zea mays L.) EN AREQUIPA-PERÚ. (2011). Revista De La Sociedad Química Del Perú. Retrieved from https://www.redalyc.org/articulo.oa?id=371937623006 McMahan, L., Devine, A. A., Grunden, A. M., & Sobsey, M. D. (2011). Validation of the H2S method to detect bacteria of fecal origin by cultured and molecular methods. Applied Microbiology and Biotechnology, 92(6), 1287–1295. https://doi.org/10.1007/S00253-011-3520-Z Zwarts, L., Magwire, M. M., Carbone, M. A., Versteven, M., Herteleer, L., Anholt, R. R. H., … Mackay, T. F. C. (2011). Complex genetic architecture of Drosophila aggressive behavior. Proceedings of the National Academy of Sciences, 108(41), 17070–17075. https://doi.org/10.1073/pnas.1113877108 Long, T. A. (2011). Many needles in a haystack: cell-type specific abiotic stress responses. Current Opinion in Plant Biology, 14(3), 325–331. https://doi.org/10.1016/j.pbi.2011.04.005 Bridgers, E. N., Chinn, M. S., Veal, M. W., & Stikeleather, L. F. (2011). Influence of Juice Preparations on the Fermentability of Sweet Sorghum. Biological Engineering Transactions, 4(2), 57–67. https://doi.org/10.13031/2013.38507 Slivka, R. M., Chinn, M. S., & Grunden, A. M. (2011). Gasification and synthesis gas fermentation: an alternative route to biofuel production. Biofuels, 2(4), 405–419. https://doi.org/10.4155/bfs.11.108 Tirado-Acevedo, O., L. Cotter, J., S. Chinn, M., & M. Grunden, A. (2011). Influence of Carbon Source Pre-Adaptation on Clostridium ljungdahlii Growth and Product Formation. Journal of Bioprocessing & Biotechniques, 01(S2). https://doi.org/10.4172/2155-9821.S2-001 Kivlin, S. N., Hawkes, C. V., & Treseder, K. K. (2011). Global diversity and distribution of arbuscular mycorrhizal fungi. Soil Biology and Biochemistry, 43(11), 2294–2303. https://doi.org/10.1016/j.soilbio.2011.07.012 Treseder, K. K., Kivlin, S. N., & Hawkes, C. V. (2011). Evolutionary trade-offs among decomposers determine responses to nitrogen enrichment. Ecology Letters, 14(9), 933–938. https://doi.org/10.1111/j.1461-0248.2011.01650.x Hsieh, T.-F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M. J., … Fischer, R. L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm. Proceedings of the National Academy of Sciences, 108(5), 1755–1762. https://doi.org/10.1073/pnas.1019273108 Pedersen, B., Hsieh, T.-F., Ibarra, C., & Fischer, R. L. (2011). MethylCoder: software pipeline for bisulfite-treated sequences. Bioinformatics, 27(17), 2435–2436. https://doi.org/10.1093/bioinformatics/btr394 Sozzani, R., & Benfey, P. N. (2011). High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype. Genome Biology, 12(3), 219. https://doi.org/10.1186/gb-2011-12-3-219 Engstrom, E. M., Andersen, C. M., Gumulak-Smith, J., Hu, J., Orlova, E., Sozzani, R., & Bowman, J. L. (2011). Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy. Plant Physiology, 155(2), 735–750. https://doi.org/10.1104/pp.110.168757 Kleiner, M., Woyke, T., Ruehland, C., & Dubilier, N. (2011, November 10). The Olavius algarvensis Metagenome Revisited: Lessons Learned from the Analysis of the Low-Diversity Microbial Consortium of a Gutless Marine Worm. Handbook of Molecular Microbial Ecology II, pp. 319–333. https://doi.org/10.1002/9781118010549.ch32 Markert, S., Gardebrecht, A., Felbeck, H., Sievert, S. M., Klose, J., Becher, D., … Schweder, T. (2011). Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont. Proteomics, 11(15), 3106–3117. https://doi.org/10.1002/pmic.201100059 Paul, J. R., Sheth, S. N., & Angert, A. L. (2011). Quantifying the impact of gene flow on phenotype- environment mismatch: A demonstration with the scarlet monkeyflower Mimulus cardinalis. American Naturalist, 178(SUPPL. 1). https://doi.org/10.1086/661781 Angert, A. L., Sheth, S. N., & Paul, J. R. (2011). Incorporating Population-Level Variation in Thermal Performance into Predictions of Geographic Range Shifts. Integrative and Comparative Biology, 51(5), 733–750. https://doi.org/10.1093/icb/icr048 Theriot, C. M., Semcer, R. L., Shah, S. S., & Grunden, A. M. (2011). Improving the Catalytic Activity of Hyperthermophilic Pyrococcus horikoshii Prolidase for Detoxification of Organophosphorus Nerve Agents over a Broad Range of Temperatures. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL, 2011. https://doi.org/10.1155/2011/565127 Stepanova, A. N., Yun, J., Robles, L. M., Novak, O., He, W., Guo, H., … Alonso, J. M. (2011). The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis. PLANT CELL, 23(11), 3961–3973. https://doi.org/10.1105/tpc.111.088047 He, W., Brumos, J., Li, H., Ji, Y., Ke, M., Gong, X., … Guo, H. (2011). A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis. The Plant Cell, 23(11), 3944–3960. https://doi.org/10.1105/tpc.111.089029 Shen, Q., Liu, Z., Song, F., Xie, Q., Hanley-Bowdoin, L., & Zhou, X. (2011). Tomato SlSnRK1 Protein Interacts with and Phosphorylates beta C1, a Pathogenesis Protein Encoded by a Geminivirus beta-Satellite. PLANT PHYSIOLOGY, 157(3), 1394–1406. https://doi.org/10.1104/pp.111.184648 Sanchez-Duran, M. A., Dallas, M. B., Ascencio-Ibanez, J. T., Reyes, M. I., Arroyo-Mateos, M., Ruiz-Albert, J., … Bejarano, E. R. (2011). Interaction between Geminivirus Replication Protein and the SUMO-Conjugating Enzyme Is Required for Viral Infection. JOURNAL OF VIROLOGY, 85(19), 9789–9800. https://doi.org/10.1128/jvi.02566-10 Alejos-Gonzalez, F., Qu, G., Zhou, L.-L., Saravitz, C. H., Shurtleff, J. L., & Xie, D.-Y. (2011). Characterization of development and artemisinin biosynthesis in self-pollinated Artemisia annua plants. PLANTA, 234(4), 685–697. https://doi.org/10.1007/s00425-011-1430-z Wynn, A. N., Rueschhoff, E. E., & Franks, R. G. (2011). Transcriptomic Characterization of a Synergistic Genetic Interaction during Carpel Margin Meristem Development in Arabidopsis thaliana. PLOS ONE, 6(10). https://doi.org/10.1371/journal.pone.0026231 Chinn, M. S., Sharma-Shivappa, R. R., & Cotter, J. L. (2011). Solvent extraction and quantification of capsaicinoids from Capsicum chinense. FOOD AND BIOPRODUCTS PROCESSING, 89(C4), 340–345. https://doi.org/10.1016/j.fbp.2010.08.003 Stepanova, A. N., & Alonso, J. M. (2011, October 18). Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions. DEVELOPMENTAL CELL, Vol. 21, pp. 608–610. https://doi.org/10.1016/j.devcel.2011.09.016 Wall, W. A., Wentworth, T. R., Shelingoski, S., Stucky, J. M., LeBlond, R. J., & Hoffmann, W. A. (2011). Lost and Found: Remnants of the Big Savannah and Their Relationship to Wet Savannas in North Carolina. CASTANEA, 76(4), 348–363. https://doi.org/10.2179/10-046.1 Azcarate-Peril, M. A., Sikes, M., & Bruno-Barcena, J. M. (2011). [Review of The intestinal microbiota, gastrointestinal environment and colorectal cancer: a putative role for probiotics in prevention of colorectal cancer?]. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 301(3), G401–G424. https://doi.org/10.1152/ajpgi.00110.2011 Krings, A. (2011). Matelea s. l. (Apocynaceae, Asclepiadoideae) in the West Indies. Systematic Botany, 36(3), 730–756. https://doi.org/10.1600/036364411x583691 Zhu, L., Chen, M.-S., & Liu, X. (2011). Changes in Phytohormones and Fatty Acids in Wheat and Rice Seedlings in Response to Hessian Fly (Diptera: Cecidomyiidae) Infestation. JOURNAL OF ECONOMIC ENTOMOLOGY, 104(4), 1384–1392. https://doi.org/10.1603/ec10455 Mickle, J. E., Lumaga, M. R. B., Moretti, A., & De Luca, P. (2011). Scanning electron microscopy studies of cuticle micromorphology in Cycas L. (Cycadaceae). PLANT BIOSYSTEMS, 145(1), 191–201. https://doi.org/10.1080/11263504.2010.547675 (Jenny) Xiang, Q.-Y., Thomas, D. T., & Xiang, Q. P. (2011). Resolving and dating the phylogeny of Cornales – Effects of taxon sampling, data partitions, and fossil calibrations. Molecular Phylogenetics and Evolution, 59(1), 123–138. https://doi.org/10.1016/j.ympev.2011.01.016 Douglas, N. A., Wall, W. A., Xiang, Q.-Y., Hoffmann, W. A., Wentworth, T. R., Gray, J. B., & Hohmann, M. G. (2011). Recent vicariance and the origin of the rare, edaphically specialized Sandhills lily, Lilium pyrophilum (Liliaceae): evidence from phylogenetic and coalescent analyses. MOLECULAR ECOLOGY, 20(14), 2901–2915. https://doi.org/10.1111/j.1365-294x.2011.05151.x Shi, M.-Z., & Xie, D.-Y. (2011). Engineering of red cells of Arabidopsis thaliana and comparative genome-wide gene expression analysis of red cells versus wild-type cells. PLANTA, 233(4), 787–805. https://doi.org/10.1007/s00425-010-1335-2 Heluane, H., Evans, M. R., Dagher, S. F., & Bruno-Barcena, J. M. (2011). Meta-Analysis and Functional Validation of Nutritional Requirements of Solventogenic Clostridia Growing under Butanol Stress Conditions and Coutilization of D-Glucose and D-Xylose. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 77(13), 4473–4485. https://doi.org/10.1128/aem.00116-11 Silva, K., Laska, B., Brown, C., Sederoff, H. W., & Khodakovskaya, M. (2011). Arabidopsis thaliana calcium-dependent lipid-binding protein (AtCLB): a novel repressor of abiotic stress response. JOURNAL OF EXPERIMENTAL BOTANY, 62(8), 2679–2689. https://doi.org/10.1093/jxb/erq468 Santa-Maria, M. C., Yencho, C. G., Haigler, C. H., Thompson, W. F., Kelly, R. M., & Sosinski, B. (2011). Starch Self-Processing in Transgenic Sweet Potato Roots Expressing a Hyperthermophilic alpha-Amylase. BIOTECHNOLOGY PROGRESS, 27(2), 351–359. https://doi.org/10.1002/btpr.573 Herrero, S., Gonzalez, E., Gillikin, J. W., Velez, H., & Daub, M. E. (2011). Identification and characterization of a pyridoxal reductase involved in the vitamin B6 salvage pathway in Arabidopsis. PLANT MOLECULAR BIOLOGY, 76(1-2), 157–169. https://doi.org/10.1007/s11103-011-9777-x Roux, D., Girard, S., Paladian, F., Bonnet, P., Lallechere, S., Gendraud, M., … Vian, A. (2011). Human Keratinocytes in Culture Exhibit No Response When Exposed to Short Duration, Low Amplitude, High Frequency (900 MHz) Electromagnetic Fields in a Reverberation Chamber. BIOELECTROMAGNETICS, 32(4), 302–311. https://doi.org/10.1002/bem.20641 Zhou, R., Benavente, L. M., Stepanova, A. N., & Alonso, J. M. (2011). A recombineering-based gene tagging system for Arabidopsis. PLANT JOURNAL, 66(4), 712–723. https://doi.org/10.1111/j.1365-313X.2011.04524.x Ratnam, J., Bond, W. J., Fensham, R. J., Hoffmann, W. A., Archibald, S., Lehmann, C. E. R., … Sankaran, M. (2011). When is a 'forest' a savanna, and why does it matter? GLOBAL ECOLOGY AND BIOGEOGRAPHY, 20(5), 653–660. https://doi.org/10.1111/j.1466-8238.2010.00634.x Feng, C.-M., Xiang, Q.-Y., & Franks, R. G. (2011). Phylogeny-based developmental analyses illuminate evolution of inflorescence architectures in dogwoods (Cornus s. l., Cornaceae). NEW PHYTOLOGIST, 191(3), 850–869. https://doi.org/10.1111/j.1469-8137.2011.03716.x Aslett, D., Haas, J., & Hyman, M. (2011). Identification of tertiary butyl alcohol (TBA)-utilizing organisms in BioGAC reactors using 13C-DNA stable isotope probing. Biodegradation, 22(5), 961–972. https://doi.org/10.1007/s10532-011-9455-3 Hoffmann, W. A., Marchin, R. M., Abit, P., & Lau, O. L. (2011). Hydraulic failure and tree dieback are associated with high wood density in a temperate forest under extreme drought. GLOBAL CHANGE BIOLOGY, 17(8), 2731–2742. https://doi.org/10.1111/j.1365-2486.2011.02401.x Carbone, M. A., Chen, Y., Hughes, G. A., Weinreb, R. N., Zabriskie, N. A., Zhang, K., & Anholt, R. R. H. (2011). Genes of the Unfolded Protein Response Pathway Harbor Risk Alleles for Primary Open Angle Glaucoma. PLOS ONE, 6(5). https://doi.org/10.1371/journal.pone.0020649 Witherow, D. S., & Carson, S. (2011). A Laboratory-Intensive Course on the Experimental Study of Protein-Protein Interactions. BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION, 39(4), 300–308. https://doi.org/10.1002/bmb.20506 Liu, X., Meng, J., Starkey, S., & Smith, C. M. (2011). Wheat Gene Expression is Differentially Affected by a Virulent Russian Wheat Aphid Biotype. JOURNAL OF CHEMICAL ECOLOGY, 37(5), 472–482. https://doi.org/10.1007/s10886-011-9949-9 Theriot, C. M., & Grunden, A. M. (2011). [Review of Hydrolysis of organophosphorus compounds by microbial enzymes]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 89(1), 35–43. https://doi.org/10.1007/s00253-010-2807-9 Geiger, E. L., Gotsch, S. G., Damasco, G., Haridasan, M., Franco, A. C., & Hoffmann, W. A. (2011). Distinct roles of savanna and forest tree species in regeneration under fire suppression in a Brazilian savanna. JOURNAL OF VEGETATION SCIENCE, 22(2), 312–321. https://doi.org/10.1111/j.1654-1103.2011.01252.x Lehmann, C. E. R., Archibald, S. A., Hoffmann, W. A., & Bond, W. J. (2011). Deciphering the distribution of the savanna biome. NEW PHYTOLOGIST, 191(1), 197–209. https://doi.org/10.1111/j.1469-8137.2011.03689.x Post, A. R., Ali, R., Krings, A., Xiang, J., Sosinski, B. R., & Neal, J. C. (2011). On the Identity of the Weedy Bittercresses (Cardamine: Brassicaceae) in United States Nurseries: Evidence from Molecules and Morphology. WEED SCIENCE, 59(1), 123–135. https://doi.org/10.1614/ws-d-10-00063.1 Nash, T. E., Dallas, M. B., Reyes, M. I., Buhrman, G. K., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2011). Functional Analysis of a Novel Motif Conserved across Geminivirus Rep Proteins. JOURNAL OF VIROLOGY, 85(3), 1182–1192. https://doi.org/10.1128/jvi.02143-10