Plant and Microbial Biology - 2006

Krings, A. (2006). Distribution and phenology of Gonolobus suberosus (Apocynaceae, Asclepiadoideae) and its varieties in North America. Vulpia, 5, 24–40.

Krings, A. (2006). Four novelties and a lectotypification in Matelea (Apocynaceae, Asclepiadoideae) from Hispaniola. Sida, 22(2), 941–953.

Krings, A., & Fantz, P. R. (2006). Notes on types in Apocynaceae – Asclepiadoideae in Cuban herbaria and four lectotypifications in West Indian Gonolobinae. Sida, 22(1), 533–537.

Krings, A., & Richardson, R. J. (2006). Cayratia japonica (Vitaceae) new to North Carolina and an updated key to the genera of Vitaceae in the Carolinas. Sida, 22(1), 813–815.

Boss, W. F., Davis, A. J., Im, Y. J., Galvão, R. M., & Perera, I. Y. (2006). Phosphoinositide Metabolism: Towards an Understanding of Subcellular Signaling. In A. L. Majumber & B. B. Biswas (Eds.), Biology of Inositols and Phosphoinositides (pp. 181–205). https://doi.org/10.1007/0-387-27600-9_8

Xie, D.-Y., Sharma, S. B., Wright, E., Wang, Z.-Y., & Dixon, R. A. (2006). Metabolic engineering of proanthocyanidins through co-expression of anthocyanidin reductase and the PAP1 MYB transcription factor. The Plant Journal, 45(6), 895–907. https://doi.org/10.1111/j.1365-313x.2006.02655.x

Brady, S. M., Long, T. A., & Benfey, P. N. (2006). Unraveling the Dynamic Transcriptome. The Plant Cell, 18(9), 2101–2111. https://doi.org/10.1105/tpc.105.037572

Long, T. A., & Benfey, P. N. (2006). Transcription factors and hormones: new insights into plant cell differentiation. Current Opinion in Cell Biology, 18(6), 710–714. https://doi.org/10.1016/j.ceb.2006.09.004

Duval, M., & Hsieh, T.-F. (2006). Patenting Applied to Genetic Sequence Information. Biotechnology and Genetic Engineering Reviews, 23(1), 317–330. https://doi.org/10.1080/02648725.2006.10648091

Stepanova, A. N., & Alonso, J. M. (2006). PCR-based screening for insertional mutants. Methods in Molecular Biology (Clifton, N.J.), 323, 163–172. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33745265233&partnerID=MN8TOARS

Hutchison, C. E., Li, J., Argueso, C., Gonzalez, M., Lee, E., Lewis, M. W., … Alonso, J. M. (2006). The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. The Plant Cell Online, 18(11), 3073–3087. https://doi.org/10.1105/tpc.106.045674

Chen, J.-G., Ullah, H., Temple, B., Liang, J., Guo, J., Alonso, J. M., … Jones, A. M. (2006). RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. Journal of Experimental Botany, 57(11), 2697–2708. https://doi.org/10.1093/jxb/erl035

Lariguet, P., Schepens, I., Hodgson, D., Pedmale, U. V., Trevisan, M., Kami, C., … Liscum, E. (2006). PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proceedings of the National Academy of Sciences, 103(26), 10134–10139. https://doi.org/10.1073/pnas.0603799103

Stepanova, A. N., & Alonso, J. M. (2006). PCR-based screening for insertional mutants. In Arabidopsis Protocols (pp. 163–172).

Benavente, L. M., & Alonso, J. M. (2006). Molecular mechanisms of ethylene signaling in Arabidopsis. Molecular BioSystems, 2(3-4), 165. https://doi.org/10.1039/b513874d

Mori, I. C., Murata, Y., Yang, Y., Munemasa, S., Wang, Y.-F., Andreoli, S., … Ecker, J. R. (2006). CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion-and Ca2+-permeable channels and stomatal closure. PLoS Biology, 4(10), e327.

Hawkes, C. V., Belnap, J., Carla, D. A., & Firestone, M. K. (2006). Arbuscular Mycorrhizal Assemblages in Native Plant Roots Change in the Presence of Invasive Exotic Grasses. Plant Soil, 281(1-2), 369–380. https://doi.org/10.1007/s11104-005-4826-3

Gehring, M., Huh, J. H., Hsieh, T.-F., Penterman, J., Choi, Y., Harada, J. J., … Fischer, R. L. (2006). DEMETER DNA Glycosylase Establishes MEDEA Polycomb Gene Self-Imprinting by Allele-Specific Demethylation. Cell, 124(3), 495–506. https://doi.org/10.1016/j.cell.2005.12.034

Santos, A. P., Wegel, E., Allen, G. C., Thompson, W. F., Stoger, E., Shaw, P., & Abranches, R. (2006). In situ methods to localize transgenes and transcripts in interphase nuclei: a tool for transgenic plant research. Plant Methods, 2, 18. https://doi.org/10.1186/1746-4811-2-18

Sheth, S. (2006). PATTERNS OF HABITAT USE BY PRIMATES IN EASTERN ECUADOR. Theses, 41, 146. Retrieved from https://irl.umsl.edu/thesis/41

Sheth, S. N., Jiménez, I., Consiglio, T. K., & Lohmann, L. G. (2006). Evaluating phylogenetic patterns of threat in Bignonieae (Bignoniaceae) using herbarium data. Abstracts - Poster. Retrieved from https://bdpi.usp.br/item/002696357

Raynaud, C., Sozzani, R., Glab, N., Domenichini, S., Perennes, C., Cella, R., … Bergounioux, C. (2006). Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. The Plant Journal: For Cell and Molecular Biology, 47(3), 395–407. https://doi.org/10.1111/j.1365-313X.2006.02799.x

Sozzani, R., Maggio, C., Varotto, S., Canova, S., Bergounioux, C., Albani, D., & Cella, R. (2006). Interplay between Arabidopsis Activating Factors E2Fb and E2Fa in Cell Cycle Progression and Development. Plant Physiology, 140(4), 1355–1366. https://doi.org/10.1104/pp.106.077990

Beebe, S. E., Rojas-Pierce, M., Yan, X., Blair, M. W., Pedraza, F., Muñoz, F., … Lynch, J. P. (2006). Quantitative Trait Loci for Root Architecture Traits Correlated with Phosphorus Acquisition in Common Bean. Crop Science, 46(1), 413. https://doi.org/10.2135/cropsci2005.0226

Helmer, G. L., Allen, G. C., & Thompson, W. F. (2006). High efficiency gene targeting in plants. Washington, DC: U.S. Patent and Trademark Office.

Allen, G. C., Flores-Vergara, M. A., Krasnyanski, S., Kumar, S., & Thompson, W. F. (2006). A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. NATURE PROTOCOLS, 1(5), 2320–2325. https://doi.org/10.1038/nprot.2006.384

Lahoreau, G., Barot, S., Gignoux, J., Hoffmann, W. A., Setterfield, S. A., & Williams, P. R. (2006). Positive effect of seed size on seedling survival in fire-prone savannas of Australia, Brazil and West Africa. JOURNAL OF TROPICAL ECOLOGY, 22, 719–722. https://doi.org/10.1017/S026646740600349X

Shen, W., & Hanley-Bowdoin, L. (2006). Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1-and mammalian AMPK-activating kinases. PLANT PHYSIOLOGY, 142(4), 1642–1655. https://doi.org/10.1104/pp.106.088476

Blevins, T., Rajeswaran, R., Shivaprasad, P. V., Beknazariants, D., Si-Ammour, A., Park, H.-S., … Pooggin, M. M. (2006). Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. NUCLEIC ACIDS RESEARCH, 34(21), 6233–6246. https://doi.org/10.1093/nar/gkl886

Franklin, M. A., Stucky, J. M., Wentworth, T. R., Brownie, C., & Roulston, T. (2006). Limitations to fruit and seed production by Lysimachia asperulifolia Poir. (Primulaceae), a rare plant species of the Carolinas. JOURNAL OF THE TORREY BOTANICAL SOCIETY, 133(3), 403–411. https://doi.org/10.3159/1095-5674(2006)133[403:LTFASP]2.0.CO;2

Azcarate-Peril, M. A., Bruno-Barcena, J. M., Hassan, H. M., & Klaenhammer, T. R. (2006). Transcriptional and functional analysis of oxalyl-coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes from Lactobacillus acidophilus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(3), 1891–1899. https://doi.org/10.1128/AEM.72.3.1891-1899.2006

Kim, C. S., Gibbon, B. C., Gillikin, J. W., Larkins, B. A., Boston, R. S., & Jung, R. (2006). The maize Mucronate mutation is a deletion in the 16-kDa gamma-zein gene that induces the unfolded protein response. PLANT JOURNAL, 48(3), 440–451. https://doi.org/10.1111/j.1365-313X.2006.02884.x

Vidra, R. L., Shear, T. H., & Wentworth, T. R. (2006). Testing the paradigms of exotic species invasion in urban riparian forests. NATURAL AREAS JOURNAL, 26(4), 339–350. https://doi.org/10.3375/0885-8608(2006)26[339:TTPOES]2.0.CO;2

Lopez-Ochoa, L., Ramirez-Prado, J., & Hanley-Bowdoin, L. (2006). Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells. JOURNAL OF VIROLOGY, 80(12), 5841–5853. https://doi.org/10.1128/JVI.02698-05

Kim, S. A., Punshon, T., Lanzirotti, A., Li, L., Alonso, J. M., Ecker, J. R., … Guerinot, M. L. (2006). Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. SCIENCE, 314(5803), 1295–1298. https://doi.org/10.1126/science.1132563

Pico-Marco, E., Navarro, J. L., & Bruno-Barcena, J. M. (2006). A closed loop exponential feeding law: Invariance and global stability analysis. JOURNAL OF PROCESS CONTROL, 16(4), 395–402. https://doi.org/10.1016/j.jprocont.2005.06.014

Modliszewski, J. L., Thomas, D. T., Fan, C. Z., Crawford, D. J., DePamphilis, C. W., & Xiang, Q. Y. (2006). Ancestral chloroplast polymorphism and historical secondary contact in a broad hybrid zone of Aesculus (Sapindaceae). AMERICAN JOURNAL OF BOTANY, 93(3), 377–388. https://doi.org/10.3732/ajb.93.3.377

Taylor, T. V., Mitchell, T. K., & Daub, M. E. (2006). An oxidoreductase is involved in cercosporin degradation by the bacterium Xanthomonas campestris pv. zinniae. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(9), 6070–6078. https://doi.org/10.1128/AEM.00483-06

Alonso, J., & Ecker, J. R. (2006). Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature Reviews Genetics, 7(7), 524–536. https://doi.org/10.1038/nrg1893

Gupton, S. L., Collings, D. A., & Allen, N. S. (2006). Endoplasmic reticulum targeted GFP reveals ER organization in tobacco NT-1 cells during cell division. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 44(2-3), 95–105. https://doi.org/10.1016/j.plaphy.2006.03.003

Rudella, A., Friso, G., Alonso, J. M., Ecker, J. R., & Wijk, K. J. (2006). Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. PLANT CELL, 18(7), 1704–1721. https://doi.org/10.1105/tpc.106.042861

Shen, W., & Huber, S. C. (2006). Polycations globally enhance binding of 14-3-3 omega to target proteins in spinach leaves. PLANT AND CELL PHYSIOLOGY, 47(6), 764–771. https://doi.org/10.1093/pcp/pcj050

Blum, U., & Gerig, T. M. (2006). Interrelationships between p-coumaric acid, evapotranspiration, soil water content, and leaf expansion. JOURNAL OF CHEMICAL ECOLOGY, 32(8), 1817–1834. https://doi.org/10.1007/s10886-006-9111-2

Johnson, E. L., & Hyman, M. R. (2006). Propane and n-butane oxidation by Pseudomonas putida GPo1. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(1), 950–952. https://doi.org/10.1128/aem.72.1.950-952.2006

Damschen, E. I., Rosenfeld, K. M., Wyer, M., Murphy-Medley, D., Wentworth, T. R., & Haddad, N. M. (2006). Women in ecology - Authors reply.

Chinn, M. S., Nokes, S. E., & Strobel, H. J. (2006). Screening of thermophilic anaerobic bacteria for solid substrate cultivation on lignocellulosic substrates. BIOTECHNOLOGY PROGRESS, Vol. 22, pp. 53–59. https://doi.org/10.1021/bp050163x

Franks, R. G., Liu, Z., & Fischer, R. L. (2006). SEUSS and LEUNIG regulate cell proliferation, vascular development and organ polarity in Arabidopsis petals. PLANTA, 224(4), 801–811. https://doi.org/10.1007/s00425-006-0264-6

Roux, D., Vian, A., Girard, S., Bonnet, P., Paladian, F., Davies, E., & Ledoigt, G. (2006). Electromagnetic fields (900 MHz) evoke consistent molecular responses in tomato plants. PHYSIOLOGIA PLANTARUM, 128(2), 283–288. https://doi.org/10.1111/j.1399-3054.2006.00740.x

Perera, I. Y., Hung, C. Y., Brady, S., Muday, G. K., & Boss, W. F. (2006). A universal role for inositol 1,4,5-trisphosphate-mediated signaling in plant gravitropism. PLANT PHYSIOLOGY, 140(2), 746–760. https://doi.org/10.1104/pp.105.075119

Carbone, M. A., Jordan, K. W., Lyman, R. F., Harbison, S. T., Leips, J., Morgan, T. J., … Mackay, T. F. C. (2006). Phenotypic variation and natural selection at Catsup, a pleiotropic quantitative trait gene in Drosphila. CURRENT BIOLOGY, 16(9), 912–919. https://doi.org/10.1016/j.cub.2006.03.051

Kumar, S., Allen, G. C., & Thompson, W. F. (2006). [Review of Gene targeting in plants: fingers on the move]. TRENDS IN PLANT SCIENCE, 11(4), 159–161. https://doi.org/10.1016/j.tplants.2006.02.002

Xiang, Q.-Y. (J., Thomas, D. T., Zhang, W., Manchester, S. R., & Murrell, Z. (2006). Species Level Phylogeny of the Genus Cornus (Cornaceae) Based on Molecular and Morphological Evidence-Implications for Taxonomy and Tertiary Intercontinental Migration. Taxon, 55(1), 9. https://doi.org/10.2307/25065525