Plant and Microbial Biology - 2005

Salinas-Mondragon, R., Brogan, A., Ward, N., Perera, I., Boss, W., Brown, C. S., & Sederoff, H. W. (2005). Gravity and light: integrating transcriptional regulation in roots. Gravitational and Space Biology Bulletin : Publication of the American Society for Gravitational and Space Biology, 18(2), 121–122. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-24944540197&partnerID=MN8TOARS

Kimbrough, J. M., Brown, C. S., & Sederoff, H. W. (2005). Co-expression and hormonal regulation of genes in response to gravity and mechanical stimulation in the Arabidopsis root apex. Gravitational and Space Biology Bulletin : Publication of the American Society for Gravitational and Space Biology, 18(2), 117–118. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-26944462406&partnerID=MN8TOARS

Ryu, J. S., Kim, J.-I., Kunkel, T., Kim, B. C., Cho, D. S., Hong, S. H., … Nam, H. G. (2005). Phytochrome-Specific Type 5 Phosphatase Controls Light Signal Flux by Enhancing Phytochrome Stability and Affinity for a Signal Transducer. Cell, 120(3), 395–406. https://doi.org/10.1016/j.cell.2004.12.019

Xie, D.-Y., & Dixon, R. A. (2005). Proanthocyanidin biosynthesis – still more questions than answers? Phytochemistry, 66(18), 2127–2144. https://doi.org/10.1016/j.phytochem.2005.01.008

Stepanova, A. N., & Alonso, J. M. (2005). Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs. Physiologia Plantarum, 123(2), 195–206. https://doi.org/10.1111/j.1399-3054.2005.00447.x

Stepanova, A. N., & Alonso, J. M. (2005). Ethylene signaling pathway. Science's STKE : Signal Transduction Knowledge Environment, 2005(276). Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33644877967&partnerID=MN8TOARS

Stepanova, A. N., & Alonso, J. M. (2005). Arabidopsis ethylene signaling pathway. Science's STKE : Signal Transduction Knowledge Environment, 2005(276). Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33644876995&partnerID=MN8TOARS

Ryu, J. S., Kim, J.-I., Kunkel, T., Kim, B. C., Cho, D. S., Hong, S. H., … Alonso, J. M. (2005). Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell, 120(3), 395–406.

Wilmoth, J. C., Wang, S., Tiwari, S. B., Joshi, A. D., Hagen, G., Guilfoyle, T. J., … Reed, J. W. (2005). NPH4/ARF7 and ARF19 promote leaf expansion and auxin‐induced lateral root formation. The Plant Journal, 43(1), 118–130.

Mason, M. G., Mathews, D. E., Argyros, D. A., Maxwell, B. B., Kieber, J. J., Alonso, J. M., … Schaller, G. E. (2005). Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. The Plant Cell Online, 17(11), 3007–3018.

Overvoorde, P. J., Okushima, Y., Alonso, J. M., Chan, A., Chang, C., Ecker, J. R., … Quach, H. (2005). Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. The Plant Cell Online, 17(12), 3282–3300.

Okushima, Y., Overvoorde, P. J., Arima, K., Alonso, J. M., Chan, A., Chang, C., … Nguyen, D. (2005). Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. The Plant Cell Online, 17(2), 444–463.

Prigge, M. J., Otsuga, D., Alonso, J. M., Ecker, J. R., Drews, G. N., & Clark, S. E. (2005). Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. The Plant Cell Online, 17(1), 61–76.

Nagpal, P., Ellis, C. M., Weber, H., Ploense, S. E., Barkawi, L. S., Guilfoyle, T. J., … Farmer, E. E. (2005). Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development, 132(18), 4107–4118.

Stepanova, A. N., & Alonso, J. M. (2005). Arabidopsis ethylene signaling pathway. Science Signaling, 2005(276), cm4.

Pfund, C., Tans-Kersten, J., Dunning, F. M., Alonso, J. M., Ecker, J. R., Allen, C., & Bent, A. F. (2005). " Flagellin is not a major defense elicitor in Ralstonia solanacearum cells (vol 17, pg 696, 2005). MOLECULAR PLANT-MICROBE INTERACTIONS, 18(9), 1024.

Hawkes, C. V., Wren, I. F., Herman, D. J., & Firestone, M. K. (2005). Plant invasion alters nitrogen cycling by modifying the soil nitrifying community. Ecol Letters, 8(9), 976–985. https://doi.org/10.1111/j.1461-0248.2005.00802.x

Hsieh, T.-F., & Fischer, R. L. (2005). BIOLOGY OF CHROMATIN DYNAMICS. Annual Review of Plant Biology, 56(1), 327–351. https://doi.org/10.1146/annurev.arplant.56.032604.144118

Pérez-Torrado, R., Bruno-Bárcena, J. M., & Matallana, E. (2005). Monitoring stress-related genes during the process of biomass propagation of Saccharomyces cerevisiae strains used for wine making. Applied and Environmental Microbiology, 11(11), 6831–6837. https://doi.org/10.1128/aem.71.11.6831-6837.2005

Xiang, Q.-Y. (2005). Cornales. In Encyclopedia of Life Sciences. https://doi.org/10.1002/9780470015902

Xiang, Q.-Y., & Boufford, D. E. (2005). Cornaceae, Mastixiaceae, Toricelliaceae, Helwingiacaee, Aucubaceae. In Z. Y. Wu & P. H. Raven (Eds.), Flora of China (Vol. 14, pp. 206–234). Science Press, Beijing, and Missouri botanical Garden Press, St. Louis.

Hamilton, P., Carlson, R., & Hyde-Deruyscher, R. (2005, July). High Throughput and High Content Screening Using Peptides. Phage Display In Biotechnology and Drug Discovery, pp. 347–384. https://doi.org/10.1201/9780849359125.ch9

Surpin, M., Rojas-Pierce, M., Carter, C., Hicks, G. R., Vasquez, J., & Raikhel, N. V. (2005). The power of chemical genomics to study the link between endomembrane system components and the gravitropic response. Proceedings of the National Academy of Sciences of the United States of America, 102(13), 4902–4907. https://doi.org/10.1073/pnas.0500222102

Krings, A., & Xiang, Q.-Y. (2005). Taxonomy of the Gonolobus complex (Apocynaceae - Asclepiadoideae) in the southeastern US: ISSR evidence and parsimony analysis. Harvard Papers in Botany, 10, 147–159. https://doi.org/10.3100/1043-4534(2005)10[147:totgca]2.0.co;2

Krings, A., Weakley, A. S., Neal, J. C., & Swab, E. C. (2005). Ranunculus ficaria (Ranunculaceae) new to North Carolina and an updated key to Carolina congeners. SIDA, Contributions To Botany, 21, 2429–2437.

Krings, A., Areces Berazain, F., & Lazcano Lara, J. C. (2005). New and rediscovered milkweeds from Cuba: Calotropis gigantea and Gonolobus stephanotrichus (Apocynaceae - Asclepiadoideae). Willdenowia, 35(2), 315–318. https://doi.org/10.3372/wi.35.35213

Krings, A., Harris, A. J., Inman, F. M., Lee, E., & Richardson, A. R. (2005). An annotated catalogue of the Bertram Whittier Wells Big Savannah (Pender Co., North Carolina) collections in the North Carolina State University Herbarium. Vulpia, 4, 52–67.

Shultz, R. W., Settlage, S. B., Hanley-Bowdoin, L., & Thompson, W. (2005). A  trichloroacetic acid-acetone method greatly reduces infrared autofluorescence of protein extracts from plant tissue. Plant Molecular Biology Reporter, 23(4), 405–409. https://doi.org/10.1007/BF02788888

Krings, A. (2005). Typification of Ceropegia palustris Pursh and Lyonia maritima Elliott (Apocynaceae, Asclepiadoideae). SIDA, Contributions To Botany, 21, 1507–1513.

Krings, A. (2005). The flora of Nags Head Woods and the Outer Banks of North Carolina: Additions and corrections. Journal of the North Carolina Academy of Science, 121, 111–116.

Krings, A. (2005). Notes on the Matelea bayatensis-correllii-tigrina complex (Apocynaceae - Asclepiadoideae - Gonolobinae) in the Greater Antilles and Bahamas. SIDA, Contributions To Botany, 21, 1525–1533.

Krings, A. (2005). Lectotypification and a new combination in Matelea (Apocynaceae - Asclepiadoideae) for an endemic Hispaniolan vine. SIDA, Contributions To Botany, 21, 2081–2085.

Krings, A. (2005). A new species of Matelea (Apocynaceae - Asclepiadoideae) from Hispaniola. SIDA, Contributions To Botany, 21, 1519–1523.

Krings, A. (2005). A new combination in Matelea (Apocynaceae - Asclepiadoideae) for an endemic Jamaican vine. SIDA, Contributions To Botany, 21, 1515–1517.

Hoffmann, W. A., Franco, A. C., Moreira, M. Z., & Haridasan, M. (2005). Specific leaf area explains differences in leaf traits between congeneric savanna and forest trees. Functional Ecology, 19(6), 932–940. https://doi.org/10.1111/j.1365-2435.2005.01045.x

Carbone, M. A., Llopart, A., Deangelis, M., Coyne, J. A., & Mackay, T. F. C. (2005). Quantitative trait loci affecting the difference in pigmentation between Drosophila yakuba and D. santomea. Genetics, 171(1), 211–225. https://doi.org/10.1534/genetics.105.044412

Xiang, Q.-Y., Sr, M., Thomas, D., Zhang, W. H., & Fan, C. Z. (2005). Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae) – tracking Tertiary plant migration. Evolution, 59(8), 139–155. https://doi.org/10.1554/03-763.1

Du, X. L., Tove, S., Kast-Hutcheson, K., & Grunden, A. (2005). Characterization of the dinuclear metal center of Pyrococcus furiosus prolidase by analysis of targeted mutants. FEBS Letters, 579(27), 6140–6146. https://doi.org/10.1016/j.febslet.2005.09.086

Denslow, S. A., Walls, A. A., & Daub, M. E. (2005). Regulation of biosynthetic genes and antioxidant properties of vitamin B-6 vitamers during plant defense responses. Physiological and Molecular Plant Pathology, 66(6), 244–255. https://doi.org/10.1016/j.pmpp.2005.09.004

Im, Y. J., Ji, M. K., Lee, A. M., Boss, W. F., & Grunden, A. (2005). Production of a thermostable archaeal superoxide reductase in plant cells. FEBS Letters, 579(25), 5521–5526. https://doi.org/10.1016/j.febslet.2005.09.015

STEPANOVA, A. N. N. A., Hoyt, J. M., Hamilton, A. A., & Alonso, J. (2005). A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in arabidopsis. Plant Cell, 17(8), 2230–2242. https://doi.org/10.1105/tpc.105.033365

Blum, U., & Gerig, T. M. (2005). Relationships between phenolic acid concentrations, transpiration, water utilization, leaf area expansion, and uptake of phenolic acids: Nutrient culture studies. Journal of Chemical Ecology, 31(8), 1907–1932. https://doi.org/10.1007/s10886-005-5934-5

Coker, J. S., Vian, A., & Davies, E. (2005). Identification, accumulation, and functional prediction of novel tomato transcripts systemically upregulated after fire damage. Physiologia Plantarum, 124(3), 311–322. https://doi.org/10.1111/j.1399-3054.2005.00488.x

Settlage, S. B., See, R. G., & Hanley-Bowdoin, L. (2005). Geminivirus C3 protein: Replication enhancement and protein interactions. Journal of Virology, 79(15), 9885–9895. https://doi.org/10.1128/jvi.79.15.9885-9895.2005

Halweg, C., Thompson, W., & Spiker, S. (2005). The Rb7 matrix attachment region increases the likelihood and magnitude of transgene expression in tobacco cells: A flow cytometric study. Plant Cell, 17(2), 418. https://doi.org/10.1105/tpc.104.028100

Choquer, M., Dekkers, K. L., Chen, H. Q., Cao, L. H., Ueng, P. P., Daub, M. E., & Chung, K. R. (2005). The  CTB1 gene encoding a fungal polyketide synthase is required for cercosporin biosynthesis and fungal virulence of Cercospora nicotianae. Molecular Plant-Microbe Interactions, 18(5), 468–476. https://doi.org/10.1094/MPMI-18-0468

Hoffmann, W. A., Da Silva, E. R., Machado, G. C., Bucci, S. J., Scholz, F. G., Goldstein, G., & Meinzer, F. C. (2005). Seasonal leaf dynamics across a tree density gradient in a Brazilian savanna. Oecologia (Online), 145(2), 307–316. https://doi.org/10.1007/s00442-005-0129-x

Houston, N. L., Fan, C. Z., Xiang, Q.-Y., Schulze, J. M., Jung, R., & Boston, R. S. (2005). Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. Plant Physiology, 137(2), 762–778. https://doi.org/10.1104/pp.104.056507

Bruno-Bárcena, J. M., Azcarate-Peril, M. A., Klaenhammer, T. R., & Hassan, H. M. (2005). Marker-free chromosomal integration of the manganese superoxide dismutase gene (sodA) from Streptococcus thermophilus into Lactobacillus gasseri. FEMS Microbiology Letters, 5(1), 91–101. https://doi.org/10.1016/j.femsle.2005.03.044

Grunden, A., Jenney, F. E., Ma, K. S., Ji, M. Y., Weinberg, M. V., & Adams, M. W. W. (2005). In vitro reconstitution of an NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus. Applied and Environmental Microbiology, 71(3), 1522–1530. https://doi.org/10.1128/AEM.71.3.1522-1530.2005

STEPANOVA, A. N. N. A., & Alonso, J. (2005). Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs. Physiologia Plantarum, 123(2), 195–206. https://doi.org/10.1111/j/1399-3054.2004.00447

Fridley, J. D., Peet, R. K., Wentworth, T. R., & White, P. S. (2005). Connecting fine- and broad-scale species-area relationships of Southeastern US Flora. Ecology (Brooklyn, New York, N.Y.), 86(5), 1172–1177. https://doi.org/10.1890/03-3187

Abranches, R., Shultz, R. W., Thompson, W., & Allen, G. C. (2005). Matrix attachment regions and regulated transcription increase and stabilize transgene expression. Plant Biotechnology Journal, 3(5), 535–543. https://doi.org/10.1111/j.1467-7652.2005.00144.x

Krings, A. (2005). Guide to tendrillate climbers of Costa Rican mountains. Ames, Iowa: Blackwell Pub. Professional.

Perera, I., Davis, A. J., Galanopilou, D., Im, Y. J., & Boss, W. F. (2005). Characterization and comparative analysis of Arabidopsis phosphatidylinositol phosphate 5-kinase 10 reveals differences in Arabidopsis and human phosphatidylinositol phosphate kinases. FEBS Letters, 579(16), 3427–3432. https://doi.org/10.1016/j.febslet.2005.05.018

Damschen, E. I., Rosenfeld, K. M., Wyer, M., Murphy-Medley, D., Wentworth, T. R., & Haddad, N. M. (2005). Visibility matters: Increasing knowledge of women's contributions to ecology. Frontiers in Ecology and the Environment, 3(4), 212–219. https://doi.org/10.2307/3868465

Levin, J. S., Thompson, W., Csinos, A. S., Stephenson, M. G., & Weissinger, A. K. (2005). Matrix attachment regions increase the efficiency and stability of RNA-mediated resistance to Tomato Spotted Wilt Virus in transgenic tobacco. Transgenic Research, 14(2), 193–206. https://doi.org/10.1007/s11248-004-5413-8

Sternberg, L. D. L., Bucci, S., Franco, A., Goldstein, G., Hoffman, W. A., Meinzer, F. C., … Scholz, F. (2005). Long range lateral root activity by neo-tropical savanna trees. Plant and Soil, 270(02-Jan), 169–178. https://doi.org/10.1007/s11104-004-1334-9

Liu, G., Holub, E. B., Alonso, J. M., Ecker, J. R., & Fobert, P. R. (2005). An Arabidopsis NPR1‐like gene, NPR4, is required for disease resistance. The Plant Journal, 41(2), 304–318. https://doi.org/10.1111/j.1365-313x.2004.02296.x

Moyer-Henry, K., Silva, I., MacFall, J., Johannes, E., Allen, N., Goldfarb, B., & Rufty, T. (2005). Accumulation and localization of aluminium in root tips of loblolly pine seedlings and the associated ectomycorrhiza Pisolithus tinctorius. Plant Cell and Environment, 28(2), 111–120. https://doi.org/10.1111/j.1365-3040.2004.01240.x

Weerasinghe, R. R., Bird, D. M., & Allen, N. S. (2005). Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus. Proceedings of the National Academy of Sciences of the United States of America, 102(8), 3147–3152. https://doi.org/10.1073/pnas.0407926102

Akesson, A., Persson, S., Love, J., Boss, W. F., Widell, S., & Sommarin, M. (2005). Overexpression of the Ca2+-binding protein calreticulin in the endoplasmic reticulum improves growth of tobacco cell suspensions (Nicotiana tabacum) in high-Ca2+ medium. Physiologia Plantarum, 123(1), 92–99. https://doi.org/10.1111/j.1399-3054.2004.00434.x

Vincent, P., Chua, M., Nogue, F., Fairbrother, A., Mekeel, H., Xu, Y., … Bankaitis, V. A. (2005). A  Sec14p-nodulin domain phosphatidylinositol transfer protein polarizes membrane growth of Arabidopsis thaliana root hairs. Journal of Cell Biology, 168(5), 801–812. https://doi.org/10.1083/jcb.200412074

Dean, T. R., Allen, S. V., & Miller, E. (2005). In vitro selection of phage RB69 RegA RNA binding sites yields UAA repeats. Virology, 336(1), 26–36. https://doi.org/10.1016/j.virol.2005.03.002

Daub, M. E., Herrero, S., & Chung, K. R. (2005). Photoactivated perylenequinone toxins in fungal pathogenesis of plants. FEMS Microbiology Letters, 252(2), 197–206. https://doi.org/10.1016/j.femsle.2005.08.033

Shelingoski, S., Leblond, R. J., Stucky, J. M., & Wentworth, T. R. (2005). Flora and soils of Wells Savannah, an example of a unique savanna type. Castanea, 70(2), 101–114. https://doi.org/10.2179/0008-7475(2005)070[0101:fasows]2.0.co;2