Plant and Microbial Biology - 2008

Peng, J., Lu, Z., Rui, J., & Lu, Y. (2008). Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil. Applied and Environmental Microbiology, 74(9), 2894–2901. https://doi.org/10.1128/aem.00070-08

Argüello-Miranda, O., & Sáenz-Arce, G. (2008). Interchromatidal central ridge and transversal symmetry in early metaphasic human chromosome one. Journal of Molecular Recognition, 21(3), 184–189. https://doi.org/10.1002/jmr.884

Krings, A. (2008). Revision of Gonolobus s.s. (Apocynaceae, Asclepiadoideae) in the West Indies. Journal of the Botanical Research Institute of Texas, 2(1), 95–138.

Krings, A. (2008). Index of names and types in West Indian Gonolobinae (Apocynaceae, Asclepiadoideae), including fourteen new lectotypifications, one neotypification, and a new combination. Journal of the Botanical Research Institute of Texas, 2(1), 139–163.

Bhatnagar, S., Chandrasekharan, S., Xie, D. Y., & Hong, Y. (2008). In vitro studies of tropical woody species. In Vitro Cellular & Developmental Biology - Animal, 44(Supplement), S54.

Brown, C. S., Sederoff, H. W., Davies, E., Ferl, R. J., & Stankovic, B. (2008). Plan(t)s for Space Exploration. In Plant Tropisms (pp. 183–195). https://doi.org/10.1002/9780470388297.ch9

Rojas-Pierce, M., Titapiwatanakun, B., Sohn, E. J., Fang, F., Larive, C. K., Blakeslee, J., … Raikhel, N. V. (2008). Arabidopsis P-Glycoprotein19 Participates in the Inhibition of Gravitropism by Gravacin. Chemistry & Biology, 15(1), 87. https://doi.org/10.1016/j.chembiol.2008.01.004

Long, T. A., Brady, S. M., & Benfey, P. N. (2008). Systems Approaches to Identifying Gene Regulatory Networks in Plants. Annual Review of Cell and Developmental Biology, 24, 81–103. https://doi.org/10.1146/annurev.cellbio.24.110707.175408

Long, T. A., Okegawa, Y., Shikanai, T., Schmidt, G. W., & Covert, S. F. (2008). Conserved role of PROTON GRADIENT REGULATION 5 in the regulation of PSI cyclic electron transport. Planta, 228(6), 907–918. https://doi.org/10.1007/s00425-008-0789-y

Dinneny, J. R., Long, T. A., Wang, J. Y., Jung, J. W., Mace, D., Pointer, S., … Benfey, P. N. (2008). Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress. Science, 320(5878), 942–945. https://doi.org/10.1126/science.1153795

Weng, J.-K., Li, X., Stout, J., & Chapple, C. (2008). Independent origins of syringyl lignin in vascular plants. Proceedings of the National Academy of Sciences, 105(22), 7887–7892. https://doi.org/10.1073/pnas.0801696105

Weng, J.-K., Li, X., Bonawitz, N. D., & Chapple, C. (2008). Emerging strategies of lignin engineering and degradation for cellulosic biofuel production. Current Opinion in Biotechnology, 19(2), 166–172. https://doi.org/10.1016/j.copbio.2008.02.014

Li, X., Weng, J.-K., & Chapple, C. (2008). Improvement of biomass through lignin modification. The Plant Journal, 54(4), 569–581. https://doi.org/10.1111/j.1365-313x.2008.03457.x

Preserving Accuracy in GenBank. (2008). Science. https://doi.org/10.1126/science.319.5870.1616a

Leivar, P., Monte, E., Al-Sady, B., Carle, C., Storer, A., Alonso, J. M., … Quail, P. H. (2008). The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. The Plant Cell Online, 20(2), 337–352. https://doi.org/10.1105/tpc.107.052142

Hu, J., Mitchum, M. G., Barnaby, N., Ayele, B. T., Ogawa, M., Nam, E., … Ecker, J. R. (2008). Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. The Plant Cell Online, 20(2), 320–336. https://doi.org/10.1105/tpc.107.057752

HAWKES, C. H. R. I. S. T. I. N. E. V., HARTLEY, I. A. I. N. P., INESON, P. H. I. L., & FITTER, A. L. A. S. T. A. I. R. H. (2008). Soil temperature affects carbon allocation within arbuscular mycorrhizal networks and carbon transport from plant to fungus. Global Change Biol, 14(5), 1181–1190. https://doi.org/10.1111/j.1365-2486.2007.01535.x

Eviner, V. T., & Hawkes, C. V. (2008). Embracing Variability in the Application of Plant-Soil Interactions to the Restoration of Communities and Ecosystems. Restoration Ecology, 16(4), 713–729. https://doi.org/10.1111/j.1526-100x.2008.00482.x

Stone, S. L., Braybrook, S. A., Paula, S. L., Kwong, L. W., Meuser, J., Pelletier, J., … Harada, J. J. (2008). Arabidopsis LEAFY COTYLEDON2 induces maturation traits and auxin activity: Implications for somatic embryogenesis. Proceedings of the National Academy of Sciences, 105(8), 3151–3156. https://doi.org/10.1073/pnas.0712364105

Huh, J. H., Bauer, M. J., Hsieh, T.-F., & Fischer, R. L. (2008). Cellular Programming of Plant Gene Imprinting. Cell, 132(5), 735–744. https://doi.org/10.1016/j.cell.2008.02.018

Krings, A. (2008). Synopsis of Gonolobus S. L. (Apocynaceae, Asclepiadoideae) in the United States and its Territories, Including Lectotypification of Lachnostoma Arizonicum. Harvard Papers in Botany, 13(2), 209–218. https://doi.org/10.3100/1043-4534-13.2.209

Balick, M. J., De Gezelle, J. M., & Arvigo, R. (2008). Feeling the Pulse in Maya Medicine: An Endangered Traditional Tool for Diagnosis, Therapy, and Tracking Patients’ Progress. EXPLORE, 4(2), 113–119. https://doi.org/10.1016/j.explore.2007.12.002

Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T.-J., Slotkin, R. K., Sosinski, B., … Martienssen, R. A. (2008). Epigenomic Consequences of Immortalized Plant Cell Suspension Culture. PLoS Biology, 6(12), e302. https://doi.org/10.1371/journal.pbio.0060302

Ascencio-Ibáñez, J. T., Sozzani, R., Lee, T.-J., Chu, T.-M., Wolfinger, R. D., Cella, R., & Hanley-Bowdoin, L. (2008). Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiology, 148(1), 436–454. https://doi.org/10.1104/pp.108.121038

Sheth, S. N., Lohmann, L. G., Consiglio, T., & Jiménez, I. (2008). Effects of detectability on estimates of geographic range size in Bignonieae. Conservation Biology, 22(1), 200–211. https://doi.org/10.1111/j.1523-1739.2007.00858.x

Hamilton, P. T., Buehrer, B., & Juzumiene, D. (2008). Growth factor coated sutures for improved tendon repair. 8th World Biomaterials Congress 2008, 1, 179. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-84869010182&partnerID=MN8TOARS

Hamilton, P. T., & Solan, A. (2008). A peptide coating for the endothelialization of intravascular devices. 8th World Biomaterials Congress 2008, 1, 200. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-84869012621&partnerID=MN8TOARS

Qy, X., & Thomas, D. T. (2008). Tracking character evolution and biogeographic history through time in Cornaceae – Does choice of methods matter? Journal of Systematics and Evolution, 46(3), 349–374.

Zou, Y., Rojas-Pierce, M., Raikhel, N., & Pirrung, M. (2008). Preparation of methyl ester precursors of biologically active agents. BioTechniques, 44(3), 377–384. https://doi.org/10.2144/000112704

Creating effective undergraduate research programs in science the transformation from student to scientist. (2008). New York: Teachers College Press.

Smith, T. A., Osmond, D. L., Moorman, C. E., Stucky, J. M., & Gilliam, J. W. (2008). Effect of vegetation management on bird habitat in Riparian buffer zones. SOUTHEASTERN NATURALIST, 7(2), 277–288. https://doi.org/10.1656/1528-7092(2008)7[277:EOVMOB]2.0.CO;2

Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., … Martienssen, R. A. (2008). [Review of Epigenomic consequences of immortalized plant cell suspension culture]. PLoS Biology, 6(12), 2880–2895.

Zhou, L.-L., Zeng, H.-N., Shi, M.-Z., & Xie, D.-Y. (2008). Development of tobacco callus cultures over expressing Arabidopsis PAP1/MYB75 transcription factor and characterization of anthocyanin biosynthesis. Planta, 229(1), 37–51. https://doi.org/10.1007/s00425-008-0809-y

Perera, I. Y., Hung, C.-Y., Moore, C. D., Stevenson-Paulik, J., & Boss, W. F. (2008). [Review of Transgenic Arabidopsis Plants Expressing the Type 1 Inositol 5-Phosphatase Exhibit Increased Drought Tolerance and Altered Abscisic Acid Signaling]. PLANT CELL, 20(10), 2876–2893. https://doi.org/10.1105/tpc.108.061374

Xiang, Q.-Y. (J., Thorne, J. L., Seo, T.-K., Zhang, W., Thomas, D. T., & Ricklefs, R. E. (2008). Rates of nucleotide substitution in Cornaceae (Cornales)—Pattern of variation and underlying causal factors. Molecular Phylogenetics and Evolution, 49(1), 327–342. https://doi.org/10.1016/j.ympev.2008.07.010

Vitale, A., & Boston, R. S. (2008). [Review of Endoplasmic reticulum quality control and the unfolded protein response: Insights from plants]. TRAFFIC, 9(10), 1581–1588. https://doi.org/10.1111/j.1600-0854.2008.00780.x

Ascencio-Ibanez, J. T., Sozzani, R., Lee, T. J., Chu, T. M., Wolfinger, R. D., Cella, R., & Hanley-Bowdoin, L. (2008). [Review of Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection]. Plant Physiology, 148(1), 436–454.

Propper, C., Moore, G. A., Mills-Koonce, W. R., Halpern, C. T., Hill-Soderlund, A. L., Calkins, S. D., … Cox, M. (2008). [Review of Gene-environment contributions to the development of infant vagal reactivity: The interaction of dopamine and maternal sensitivity]. CHILD DEVELOPMENT, 79(5), 1377–1394. https://doi.org/10.1111/j.1467-8624.2008.01194.x

Tuttle, J. R., Idris, A. M., Brown, J. K., Haigler, C. H., & Robertson, D. (2008). Geminivirus-mediated gene silencing from Cotton leaf crumple virus is enhanced by low temperature in cotton. PLANT PHYSIOLOGY, 148(1), 41–50. https://doi.org/10.1104/pp.108.123869

Silva, L. C. R., Sternberg, L., Haridasan, M., Hoffmann, W. A., Miralles-Wilhelm, F., & Franco, A. C. (2008). Expansion of gallery forests into central Brazilian savannas. GLOBAL CHANGE BIOLOGY, 14(9), 2108–2118. https://doi.org/10.1111/j.1365-2486.2008.01637.x

Azhakanandam, S., Nole-Wilson, S., Bao, F., & Franks, R. G. (2008). SEUSS and AINTEGUMENTA mediate patterning and ovule initiation during gynoecium medial domain development. PLANT PHYSIOLOGY, 146(3), 1165–1181. https://doi.org/10.1104/pp.107.114751

Krings, A., Thomas, D. T., & Xiang, Q.-Y. (2008). On the Generic Circumscription of Gonolobus (Apocynaceae, Asclepiadoideae): Evidence from Molecules and Morphology. Systematic Botany, 33(2), 403–415. https://doi.org/10.1600/036364408784571527

Thomas, D. T., Ahedor, A. R., Williams, C. F., DePamphilis, C., Crawford, D. J., & Xiang, Q. Y. (2008). Microsatellite analysis of a broad hybrid zone in Aesculus (Sapindales) – Inferences in genetic structure and evolution. International Journal of Plant Sciences, 169(5), 647–657. https://doi.org/10.1086/533605

Xiang, Q.-Y., & Thomas, D. T. (2008, May). Tracking character evolution and biogeographic history through time in Cornaceae - Does choice of methods matter? JOURNAL OF SYSTEMATICS AND EVOLUTION, Vol. 46, pp. 349–374. https://doi.org/10.3724/SP.J.1002.2008.08056

Knebel, L., Robison, D. J., Wentworth, T. R., & Klepzig, K. D. (2008). Resin flow responses to fertilization, wounding and fungal inoculation in loblolly pine (Pinus taeda) in North Carolina. TREE PHYSIOLOGY, 28(6), 847–853. https://doi.org/10.1093/treephys/28.6.847

Sambandan, D., Carbone, M. A., Anholt, R. R. H., & Mackay, T. E. C. (2008). Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster. GENETICS, 179(2), 1079–1088. https://doi.org/10.1534/genetics.108.086769

Zhang, W., Xiang, Q.-Y., Thomas, D. T., Wiegmann, B. M., Frohlich, M. W., & Soltis, D. E. (2008). [Review of Molecular evolution of PISTILLATA-like genes in the dogwood genus Cornus (Cornaceae)]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 47(1), 175–195. https://doi.org/10.1016/j.ympev.2007.12.022

Shi, J., Chinn, M. S., & Sharma-Shivappa, R. R. (2008). Microbial pretreatment of cotton stalks by solid state cultivation of Phanerochaete chrysosporium. BIORESOURCE TECHNOLOGY, 99(14), 6556–6564. https://doi.org/10.1016/j.biortech.2007.11.069

Veleaz, H., Glassbrook, N. J., & Daub, M. E. (2008). Mannitol biosynthesis is required for plant pathogenicity by Alternaria alternata. FEMS MICROBIOLOGY LETTERS, 285(1), 122–129. https://doi.org/10.1111/j.1574-6968.2008.01224.x

Bucci, S. J., Scholz, F. G., Goldstein, G., Hoffmann, W. A., Meinzer, F. C., Franco, A. C., … Miralles-Wilhelm, F. (2008). Controls on stand transpiration and soil water utilization along a tree density gradient in a Neotropical savanna. AGRICULTURAL AND FOREST METEOROLOGY, 148(6-7), 839–849. https://doi.org/10.1016/j.agrformet.2007.11.013

Costa, M. D. L., Reis, P. A. B., Valente, M. A. S., Irsigler, A. S. T., Carvalho, C. M., Loureiro, M. E., … Fontes, E. P. B. (2008). A new branch of endoplasmic reticulum stress signaling and the osmotic signal converge on plant-specific asparagine-rich proteins to promote cell death. JOURNAL OF BIOLOGICAL CHEMISTRY, 283(29), 20209–20219. https://doi.org/10.1074/jbc.M802654200

Goldstein, G., Meinzer, F. C., Bucci, S. J., Scholz, F. G., Franco, A. C., & Hoffmann, W. A. (2008, March). Water economy of Neotropical savanna trees: six paradigms revisited. TREE PHYSIOLOGY, Vol. 28, pp. 395–404. https://doi.org/10.1093/treephys/28.3.395

Stepanova, A. N., Robertson-Hoyt, J., Yun, J., Benavente, L. M., Xie, D.-Y., Doležal, K., … Alonso, J. M. (2008). TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development. Cell, 133(1), 177–191. https://doi.org/10.1016/j.cell.2008.01.047

Hao, G.-Y., Hoffmann, W. A., Scholz, F. G., Bucci, S. J., Meinzer, F. C., Franco, A. C., … Goldstein, G. (2008). Stem and leaf hydraulics of congeneric tree species from adjacent tropical savanna and forest ecosystems. OECOLOGIA, 155(3), 405–415. https://doi.org/10.1007/s00442-007-0918-5

Chinn, M. S., Nokes, S. E., & Strobel, H. J. (2008). Influence of moisture content and cultivation duration on Clostridium thermocellum 27405 end-product formation in solid substrate cultivation on Avicel. BIORESOURCE TECHNOLOGY, 99(7), 2664–2671. https://doi.org/10.1016/j.biortech.2007.04.052

Holmes, R. A., Boston, R. S., & Payne, G. A. (2008). [Review of Diverse inhibitors of aflatoxin biosynthesis]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 78(4), 559–572. https://doi.org/10.1007/s00253-008-1362-0

Roux, D., Vian, A., Girard, S., Bonnet, P., Paladian, F., Davies, E., & Ledoigt, G. (2008). High frequency (900 MHz) low amplitude (5 V m(-1)) electromagnetic field: a genuine environmental stimulus that affects transcription, translation, calcium and energy charge in tomato. PLANTA, 227(4), 883–891. https://doi.org/10.1007/s00425-007-0664-2

Hoffmann, W. A., & Haridasan, M. (2008). The invasive grass, Melinis minutiflora, inhibits tree regeneration in a Neotropical savanna. AUSTRAL ECOLOGY, 33(1), 29–36. https://doi.org/10.1111/j.1442-9993.2007.01787.x

Skinner, K. M., Martinez-Prado, A., Hyman, M. R., Williamson, K. J., & Ciuffetti, L. M. (2008). Pathway, inhibition and regulation of methyl tertiary butyl ether oxidation in a filamentous fungus, Graphium sp. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 77(6), 1359–1365. https://doi.org/10.1007/s00253-007-1268-2

Galvao, R. M., Kota, U., Soderblom, E. J., Goshe, M. B., & Boss, W. F. (2008). Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains. BIOCHEMICAL JOURNAL, 409, 117–127. https://doi.org/10.1042/bj20070959

Dong, S., Shew, H. D., Tredway, L. P., Lu, J., Sivamani, E., Miller, E. S., & Qu, R. (2008). Expression of the bacteriophage T4 lysozyme gene in tall fescue confers resistance to gray leaf spot and brown patch diseases. TRANSGENIC RESEARCH, 17(1), 47–57. https://doi.org/10.1007/s11248-007-9073-3