Plant and Microbial Biology - 2021

Akinyemi, T. S., Shao, N., Lyu, Z., Drake, I. J., Liu, Y., & Whitman, W. B. (2021). Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis. ACS Synthetic Biology, 10(11), 3028–3039. https://doi.org/10.1021/acssynbio.1c00322

Lyu, Z. (2021). Back to the Source: Molecular Identification of Methanogenic Archaea as Markers of Colonic Methane Production. Digestive Diseases and Sciences, 66(11), 3661–3664. https://doi.org/10.1007/s10620-021-06839-0

Gallardo-Williams, M. T., Parks, L. D., & Carson, S. (2021). Creation of a Cohort of Educational Research Practitioners: The TH!NK Researchers Program. The Journal of Faculty Development, 35(2), 10–19.

Spooner, J. K., Peet, R. K., Schafale, M. P., Weakley, A. S., & Wentworth, T. R. (2021). The Role of Fire in the Dynamics of Piedmont Vegetation. FIRE ECOLOGY AND MANAGEMENT PAST, PRESENT, AND FUTURE OF US FORESTED ECOSYSTEMS, Vol. 39, pp. 31–62. https://doi.org/10.1007/978-3-030-73267-7_2

Franchini, E., Beretta, V. M., Din, I. U., Lacchini, E., Broeck, L. V., Sozzani, R., … Kater, M. M. (2021, May 3). The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice (Vol. 5). Vol. 5. https://doi.org/10.1101/2021.05.03.442460

Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation (Vol. 2). Vol. 2. https://doi.org/10.1101/2021.02.26.433082

Krishnamoorthy, S., Schwartz, M. F., Broeck, L. V., Hunt, A., Horn, T. J., & Sozzani, R. (2021). Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals. BioDesign Research. https://doi.org/10.34133/2021/9890319

Choudoir, M. J., Järvenpää, M. J., Marttinen, P., & Buckley, D. H. (2021, January 11). A non-adaptive demographic mechanism for genome expansion in <i>Streptomyces</i> (Vol. 1). Vol. 1. https://doi.org/10.1101/2021.01.09.426074

Ishaq, S. L., Parada, F. J., Wolf, P. G., Bonilla, C. Y., Carney, M. A., Benezra, A., … Morar, N. (2021). Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice. MSystems, 6(4). https://doi.org/10.1128/msystems.00471-21

Friesner, J., Colon-Carmona, A., Schnoes, A. M., Stepanova, A., Mason, G. A., Macintosh, G. C., … Dinneny, J. R. (2021). Broadening the impact of plant science through innovative, integrative, and inclusive outreach. PLANT DIRECT, 5(4). https://doi.org/10.1002/pld3.316

Roszak, P., Heo, J.-O., Blob, B., Toyokura, K., Sugiyama, Y., Balaguer, M. A. de L., … Helariutta, Y. (2021). Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization. SCIENCE, 374(6575), 1577-+. https://doi.org/10.1126/science.aba5531

Lindelof, K., & Krings, A. (2021). Scientific Note: Capsule-Seed Allometric Relationships in Ludwigia ravenii (Onagraceae), a Critically Imperiled Wetland-Obligate. CASTANEA, 86(2), 278–282. https://doi.org/10.2179/0008-7475.86.2.278

Thomas, E., Noar, R. D., & Daub, M. E. (2021). A polyketide synthase gene cluster required for pathogenicity of Pseudocercospora fijiensis on banana. PLOS ONE, 16(10), e0258981. https://doi.org/10.1371/journal.pone.0258981

Li, M., He, X., Hovary, C. L., Zhu, Y., Dong, Y., Liu, S., … Xie, D.-Y. (2021). A de novo regulation design shows an effectiveness in altering plant secondary metabolism. Journal of Advanced Research, 6. https://doi.org/10.1016/j.jare.2021.06.017

Zhu, Y., Scholle, F., Kisthardt, S. C., & Xie, D.-Y. (2021, July 2). Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E. [], Vol. 7. https://doi.org/10.1101/2021.07.01.450756

Tolsma, J. S., Ryan, K. T., Torres, J. J., Richards, J. T., Richardson, Z., Land, E. S., … Doherty, C. J. (2021). The Circadian-clock Regulates the Arabidopsis Gravitropic Response. Gravitational and Space Research. https://doi.org/10.2478/gsr-2021-0014

A. Lee-Yaw, J., L. McCune, J., Pironon, S., & N. Sheth, S. (2021, December 21). Species distribution models rarely predict the biology of real populations. ECOGRAPHY, Vol. 12. https://doi.org/10.1111/ecog.05877

Bossche, T., Kunath, B. J., Schallert, K., Schaepe, S. S., Abraham, P. E., Armengaud, J., … Muth, T. (2021). Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows. NATURE COMMUNICATIONS, 12(1). https://doi.org/10.1038/s41467-021-27542-8

Chen, H., Bullock, D. A., Jr., Alonso, J. M., & Stepanova, A. N. (2021). To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses. Plants. https://doi.org/10.3390/plants11010033

Baker, M., Blackman, S., Cooper, E., Smartt, K., Walser, D., Boland, M., … Chinn, M. S. (2021). Exploratory analysis of Spirulina platensis LB 2340 growth in varied concentrations of anaerobically digested pig effluent (ADPE). HELIYON, 7(9). https://doi.org/10.1016/j.heliyon.2021.e08065

Preston, J. C., Wooliver, R., Driscoll, H., Coughlin, A., & Sheth, S. N. (2021, December 12). Spatial variation in high temperature-regulated gene expression predicts evolution of plasticity with climate change in the scarlet monkeyflower. MOLECULAR ECOLOGY, Vol. 12. https://doi.org/10.1111/mec.16300

Tan, Y., Wang, C., Schneider, T., Li, H., Souza, R. F., Tang, X., … Zhang, D. (2021). Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens. MICROBIOLOGY SPECTRUM, 9(2). https://doi.org/10.1128/Spectrum.00509-21

Mordant, A., & Kleiner, M. (2021). Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes. MICROBIOLOGY SPECTRUM, 9(3). https://doi.org/10.1128/Spectrum.01877-21

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). Epigenetic modification associated with climate regulates betulin biosynthesis in birch. JOURNAL OF FORESTRY RESEARCH, Vol. 12. https://doi.org/10.1007/s11676-021-01424-7

Hodgens, C., Akpa, B. S., & Long, T. A. (2021). [Review of Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models]. CURRENT OPINION IN PLANT BIOLOGY, 64. https://doi.org/10.1016/j.pbi.2021.102149

Dow, E. G., Wood-Charlson, E. M., Biller, S. J., Paustian, T., Schirmer, A., Sheik, C. S., … Arkin, A. P. (2021). Bioinformatic Teaching Resources - For Educators, by Educators - Using KBase, a Free, User-Friendly, Open Source Platform. FRONTIERS IN EDUCATION, 6. https://doi.org/10.3389/feduc.2021.711535

Hoffmann, W. A., Rodrigues, A. C., Uncles, N., & Rossi, L. (2021). Hydraulic segmentation does not protect stems from acute water loss during fire. TREE PHYSIOLOGY, 41(10), 1785–1793. https://doi.org/10.1093/treephys/tpab057

Maggie Sogin, E., Kleiner, M., Borowski, C., Gruber-Vodicka, H. R., & Dubilier, N. (2021). Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses. ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718. https://doi.org/10.1146/annurev-micro-051021-123130

Qiao, H., & Stepanova, A. N. (2021, October). Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity. CURRENT OPINION IN PLANT BIOLOGY, Vol. 63. https://doi.org/10.1016/j.pbi.2021.102107

Rocca, J. D., Muscarella, M. E., Peralta, A. L., Izabel-Shen, D., & Simonin, M. (2021). Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering. MSYSTEMS, 6(4). https://doi.org/10.1128/mSystems.00538-21

Lin, C.-Y., Sun, Y., Song, J., Chen, H.-C., Shi, R., Yang, C., … Chiang, V. L. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.727932

Stepanova, A. N. (2021, September 30). Plant Biology Research: What Is Next? FRONTIERS IN PLANT SCIENCE, Vol. 12. https://doi.org/10.3389/fpls.2021.749104

Scalon, M. C., Rossatto, D. R., Oliveras, I., Miatto, R. C., Gray, E. F., Chaves Bicalho Domingos, F. M., … Franco, A. C. (2021). Fire and drought: Shifts in bark investment across a broad geographical scale for Neotropical savanna trees. BASIC AND APPLIED ECOLOGY, 56, 110–121. https://doi.org/10.1016/j.baae.2021.06.011

Ataeian, M., Vadlamani, A., Haines, M., Mosier, D., Dong, X., Kleiner, M., … Hawley, A. K. (2021). Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology. ISCIENCE, 24(12). https://doi.org/10.1016/j.isci.2021.103405

Aimone, C. D., De Leon, L., Dallas, M. M., Ndunguru, J., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2021). A New Type of Satellite Associated with Cassava Mosaic Begomoviruses. JOURNAL OF VIROLOGY, 95(21). https://doi.org/10.1128/JVI.00432-21

Smith, S., Salvato, F., Garikipati, A., Kleiner, M., & Septer, A. N. (2021). Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA. JOURNAL OF BACTERIOLOGY, 203(21). https://doi.org/10.1128/JB.00399-21

Jensen, M., Wippler, J., & Kleiner, M. (2021). Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses. MICROBIOLOGY SPECTRUM, 9(2). https://doi.org/10.1128/Spectrum.01429-21

Clark, N. M., Nolan, T. M., Wang, P., Song, G., Montes, C., Valentine, C. T., … Walley, J. W. (2021). Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. NATURE COMMUNICATIONS, 12(1). https://doi.org/10.1038/s41467-021-26165-3

Wang, Y., Gong, Q., Wu, Y., Huang, F., Ismayil, A., Zhang, D., … Liu, Y. (2021). A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. CELL HOST & MICROBE, 29(9), 1393-+. https://doi.org/10.1016/j.chom.2021.07.003

Wall, W. A., Hohmann, M. G., Just, M. G., & Hoffmann, W. A. (2021). Characterizing past fire occurrence in longleaf pine ecosystems with the Mid-Infrared Burn Index and a Random Forest classifier. FOREST ECOLOGY AND MANAGEMENT, 500. https://doi.org/10.1016/j.foreco.2021.119635

Spurney, R., Schwartz, M., Gobble, M., Sozzani, R., & Broeck, L. (2021). Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification. MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 47–65. https://doi.org/10.1007/978-1-0716-1534-8_4

Sheppard, J., Land, E. S., Toennisson, T. A., Doherty, C. J., & Perera, I. Y. (2021). Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots. LIFE-BASEL, 11(10). https://doi.org/10.3390/life11101010

Mayer, M. L., Veal, M. W., Godfrey, E. E., III, & Chinn, M. S. (2021). Response of canola yields from marginal lands managed with tillage practices. JOURNAL OF AGRICULTURE AND FOOD RESEARCH, 4. https://doi.org/10.1016/j.jafr.2021.100133

Li, M., Guo, L., Wang, Y., Li, Y., Jiang, X., Liu, Y., … Xia, T. (2021, September 21). Molecular and Biochemical Characterization of Two 4-Coumarate: Coa Ligase Genes in Tea Plant (Camellia Sinensis). https://doi.org/10.21203/rs.3.rs-897959/v1

Barley, J. M., Cheng, B. S., Sasaki, M., Gignoux-Wolfsohn, S., Hays, C. G., Putnam, A. B., … Kelly, M. (2021). Limited plasticity in thermally tolerant ectotherm populations: evidence for a trade-off. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 288(1958). https://doi.org/10.1098/rspb.2021.0765

Land, E. S., Cridland, C. A., Craige, B., Dye, A., Hildreth, S. B., Helm, R. F., … Perera, I. Y. (2021). A Role for Inositol Pyrophosphates in the Metabolic Adaptations to Low Phosphate in Arabidopsis. METABOLITES, 11(9). https://doi.org/10.3390/metabo11090601

Li, Y., Li, X., Zhao, M.-H., Pang, Z.-Y., Wei, J.-T., Tigabu, M., … Zhao, X.-Y. (2021). [Review of An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use]. HORTICULTURAE, 7(8). https://doi.org/10.3390/horticulturae7080252

Jin, X., Zhang, Y., Zhang, R., Nguyen, K.-U., Lindsey, J. S., & Miller, E. S. (2021). Identification of Putative Biosynthetic Gene Clusters for Tolyporphins in Multiple Filamentous Cyanobacteria. LIFE-BASEL, 11(8). https://doi.org/10.3390/life11080758

Abreu, R. C. R., Durigan, G., Melo, A. C. G., Pilon, N. A. L., & Hoffmann, W. A. (2021, August 28). Facilitation by isolated trees triggers woody encroachment and a biome shift at the savanna-forest transition. JOURNAL OF APPLIED ECOLOGY. https://doi.org/10.1111/1365-2664.13994

Whitaker, B. K., Giauque, H., Timmerman, C., Birk, N., & Hawkes, C. V. (2021, August 18). Local Plants, Not Soils, Are the Primary Source of Foliar Fungal Community Assembly in a C4 Grass. MICROBIAL ECOLOGY, Vol. 8. https://doi.org/10.1007/s00248-021-01836-2

Li, M., Cui, Q., Zhang, X.-Q., & Hsieh, T.-F. (2021, September 6). Epigenetic remodeling by DNA glycosylases during rice reproduction. MOLECULAR PLANT, Vol. 14, pp. 1433–1435. https://doi.org/10.1016/j.molp.2021.07.009

Baker, B. M., Carbone, M. A., Huang, W., Anholt, R. R. H., & Mackay, T. F. C. (2021). Genetic basis of variation in cocaine and methamphetamine consumption in outbred populations of Drosophila melanogaster. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(23). https://doi.org/10.1073/pnas.2104131118

Villellas, J., Ehrlen, J., Crone, E. E., Csergo, A. M., Garcia, M. B., Laine, A.-L., … Buckley, Y. M. (2021, August 5). PHENOTYPIC PLASTICITY MASKS RANGE-WIDE GENETIC DIFFERENTIATION FOR VEGETATIVE BUT NOT REPRODUCTIVE TRAITS IN A SHORT-LIVED PLANT. ECOLOGY LETTERS, Vol. 8. https://doi.org/10.1111/ele.13858

Aimone, C. D., Lavington, E., Hoyer, J. S., Deppong, D. O., Mickelson-Young, L., Jacobson, A., … Duffy, S. (2021). Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation. JOURNAL OF GENERAL VIROLOGY, 102(7). https://doi.org/10.1099/jgv.0.001622

Kleiner, M., Kouris, A., Jensen, M., Grace, D. A., Liu, Y., Korenek, A., … Strous, M. (2021, March 30). Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes (Vol. 3). Vol. 3. https://doi.org/10.1101/2021.03.29.437612

Mankowski, A., Kleiner, M., Erséus, C., Leisch, N., Sato, Y., Volland, J.-M., … Gruber-Vodicka, H. (2021, April 28). Highly variable fidelity drives symbiont community composition in an obligate symbiosis (Vol. 4). Vol. 4. https://doi.org/10.1101/2021.04.28.441735

Sato, Y., Wippler, J., Wentrup, C., Ansorge, R., Sadowski, M., Gruber-Vodicka, H., … Kleiner, M. (2021, January 30). Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium (Vol. 1). Vol. 1. https://doi.org/10.1101/2021.01.30.428904

Jensen, M., Wippler, J., & Kleiner, M. (2021, June 17). Evaluation of RNAlater™ as a field-compatible preservation method for metaproteomic analyses of bacteria-animal symbioses (Vol. 6). Vol. 6. https://doi.org/10.1101/2021.06.16.448770

Simonin, M., Rocca, J. D., Gerson, J. R., Moore, E., Brooks, A. C., Czaplicki, L., … Bernhardt, E. S. (2021, July 29). Consistent declines in aquatic biodiversity across diverse domains of life in rivers impacted by surface coal mining. ECOLOGICAL APPLICATIONS. https://doi.org/10.1002/eap.2389

Jerome, D. K., Petry, W. K., Mooney, K. A., & Iler, A. M. (2021, July 29). Snow melt timing acts independently and in conjunction with temperature accumulation to drive subalpine plant phenology. GLOBAL CHANGE BIOLOGY, Vol. 7. https://doi.org/10.1111/gcb.15803

Hawkes, C. V., Kjoller, R., Raaijmakers, J. M., Riber, L., Christensen, S., Rasmussen, S., … Hansen, L. H. (2021). Extension of Plant Phenotypes by the Foliar Microbiome. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 72, 2021, Vol. 72, pp. 823–846. https://doi.org/10.1146/annurev-arplant-080620-114342

Wapshott-Stehli, H. L., & Grunden, A. M. (2021). Temperature and solvent exposure response of three fatty acid peroxygenase enzymes for application in industrial enzyme processes. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 571, 60–65. https://doi.org/10.1016/j.bbrc.2021.07.052

Wagner, M. R., Tang, C., Salvato, F., Clouse, K. M., Bartlett, A., Vintila, S., … Kleiner, M. (2021). Microbe-dependent heterosis in maize. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(30). https://doi.org/10.1073/pnas.2021965118

Thomas, S. K., Liu, X., Du, Z.-Y., Dong, Y., Cummings, A., Pokorny, L., … Leebens-Mack, J. H. (2021, July 14). Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set. AMERICAN JOURNAL OF BOTANY, Vol. 7. https://doi.org/10.1002/ajb2.1696

De Antonio, A. C., Hoffmann, W. A., & Rossatto, D. R. (2021, June 18). The role of morpho-physiological traits in frost tolerance of neotropical savanna trees. TREES-STRUCTURE AND FUNCTION. https://doi.org/10.1007/s00468-021-02150-7

Betegon-Putze, I., Mercadal, J., Bosch, N., Planas-Riverola, A., Marques-Bueno, M., Vilarrasa-Blasi, J., … Cano-Delgado, A. I. (2021). Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots. MOLECULAR SYSTEMS BIOLOGY, 17(6). https://doi.org/10.15252/msb.20209864

Zhao, C., Yaschenko, A., Alonso, J. M., & Stepanova, A. N. (2021). [Review of Leveraging synthetic biology approaches in plant hormone research]. CURRENT OPINION IN PLANT BIOLOGY, 60. https://doi.org/10.1016/j.pbi.2020.10998

Ravishankar, E., Charles, M., Xiong, Y., Henry, R., Swift, J., Rech, J., … Brendan T. O'Connor. (2021). Balancing crop production and energy harvesting in organic solar-powered greenhouses. CELL REPORTS PHYSICAL SCIENCE, 2(3). https://doi.org/10.1016/j.xcrp.2021.100381

Komarnytsky, S., Rathinasabapathy, T., Wagner, C., Metzger, B., Carlisle, C., Panda, C., … Varadharaj, S. (2021). [Review of Endocannabinoid System and Its Regulation by Polyunsaturated Fatty Acids and Full Spectrum Hemp Oils]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(11). https://doi.org/10.3390/ijms22115479

Kivlin, S. N., Hawkes, C. V., Papeş, M., Treseder, K. K., & Averill, C. (2021). The future of microbial ecological niche theory and modeling. New Phytologist, 231(2), 508–511. https://doi.org/10.1111/nph.17373

Overbey, E. G., Saravia-Butler, A. M., Zhang, Z., Rathi, K. S., Fogle, H., Silveira, W. A., … Galazka, J. M. (2021). NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data. ISCIENCE, 24(4). https://doi.org/10.1016/j.isci.2021.102361

Ahsan, N., Rao, R. S. P., Wilson, R. S., Punyamurtula, U., Salvato, F., Petersen, M., … Ramratnam, B. (2021). [Review of Mass spectrometry-based proteomic platforms for better understanding of SARS-CoV-2 induced pathogenesis and potential diagnostic approaches]. PROTEOMICS, 21(10). https://doi.org/10.1002/pmic.202000279

Fitzgerald, J. L., Stuble, K. L., Nichols, L. M., Diamond, S. E., Wentworth, T. R., Pelini, S. L., … Penick, C. A. (2021). Abundance of spring- and winter-active arthropods declines with warming. ECOSPHERE, 12(4). https://doi.org/10.1002/ecs2.3473

Tallo, C. A., Duncan, L. H., Yamamoto, A. H., Slaydon, J. D., Arya, G. H., Turlapati, L., … Carbone, M. A. (2021). Heat shock proteins and small nucleolar RNAs are dysregulated in a Drosophila model for feline hypertrophic cardiomyopathy. G3-GENES GENOMES GENETICS, 11(1). https://doi.org/10.1093/g3journal/jkaa014

Flake, S. W., Abreu, R. C. R., Durigan, G., & Hoffmann, W. A. (2021, May 17). Savannas are not old fields: Functional trajectories of forest expansion in a fire-suppressed Brazilian savanna are driven by habitat generalists. FUNCTIONAL ECOLOGY. https://doi.org/10.1111/1365-2435.13818

Craig, K., Johnson, B. R., & Grunden, A. (2021). [Review of Leveraging Pseudomonas Stress Response Mechanisms for Industrial Applications]. FRONTIERS IN MICROBIOLOGY, 12. https://doi.org/10.3389/fmicb.2021.660134

Chen, W., Faulkner, N., Smith, C., Fruchte, M., & Hyman, M. (2021). Draft Genome Sequences of Four Aerobic Isobutane-Metabolizing Bacteria. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10(18). https://doi.org/10.1128/MRA.01381-20

McFarlane, H. E., Mutwil-Anderwald, D., Verbancic, J., Picard, K. L., Gookin, T. E., Froehlich, A., … Persson, S. (2021). A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis. DEVELOPMENTAL CELL, 56(10), 1484-+. https://doi.org/10.1016/j.devcel.2021.03.031

Hestrin, R., Lee, M. R., Whitaker, B. K., & Pett-Ridge, J. (2021). [Review of The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution]. PHYTOBIOMES JOURNAL, 5(1), 14–28. https://doi.org/10.1094/PBIOMES-04-20-0029-FI

Murnane, R. A., Chen, W., Hyman, M., & Semprini, L. (2021). Long-term cometabolic transformation of 1,1,1-trichloroethane and 1,4-dioxane by Rhodococcus rhodochrous ATCC 21198 grown on alcohols slowly produced by orthosilicates. JOURNAL OF CONTAMINANT HYDROLOGY, 240. https://doi.org/10.1016/j.jconhyd.2021.103796

Tan, Y., Wang, C., Schneider, T., Li, H., Souza, R. F., Tang, X., … Zhang, D. (2021, June 5). Comparative phylogenomic analysis reveals evolutionary genomic changes and novel toxin families in endophytic Liberibacter pathogens (Vol. 6). Vol. 6. https://doi.org/10.1101/2021.06.02.446850

Shen, W., & Hanley-Bowdoin, L. (2021). SnRK1: a versatile plant protein kinase that limits geminivirus infection. CURRENT OPINION IN VIROLOGY, 47, 18–24. https://doi.org/10.1016/j.coviro.2020.12.002

Jin, X., Miller, E. S., & Lindsey, J. S. (2021). Natural Product Gene Clusters in the Filamentous Nostocales Cyanobacterium HT-58-2. LIFE-BASEL, 11(4). https://doi.org/10.3390/life11040356

Schwartz, M. F., Peters, R., Hunt, A. M., Abdul-Matin, A.-K., Broeck, L., & Sozzani, R. (2021). [Review of Divide and Conquer: The Initiation and Proliferation of Meristems]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 147–156. https://doi.org/10.1080/07352689.2021.1915228

Zhalnina, K., Hawkes, C., Shade, A., Firestone, M. K., & Pett-Ridge, J. (2021). Managing Plant Microbiomes for Sustainable Biofuel Production. PHYTOBIOMES JOURNAL, Vol. 5, pp. 3–13. https://doi.org/10.1094/PBIOMES-12-20-0090-E

Simpson, J. P., Wunderlich, C., Li, X., Svedin, E., Dilkes, B., & Chapple, C. (2021). Metabolic source isotopic pair labeling and genome-wide association are complementary tools for the identification of metabolite-gene associations in plants. PLANT CELL, 33(3), 492–510. https://doi.org/10.1093/plcell/koaa046

Jones, O. R., Barks, P., Stott, I., James, T. D., Levin, S., Petry, W. K., … Salguero-Gómez, R. (2021, April 26). Rcompadre and Rage - two R packages to facilitate the use of the COMPADRE and COMADRE databases and calculation of life history traits from matrix population models (Vol. 4). Vol. 4. https://doi.org/10.1101/2021.04.26.441330

Mazzoni-Putman, S. M., Brumos, J., Zhao, C., Alonso, J. M., & Stepanova, A. N. (2021). Auxin Interactions with Other Hormones in Plant Development. Cold Spring Harbor Perspectives in Biology, 13(10), a039990. https://doi.org/10.1101/cshperspect.a039990

Crozier, C. R., Carvalho, H. D. R., Johnson, A., Chinn, M., & Heitman, J. L. (2021). Appropriate "marginal" farmlands for second-generation biofuel crops in North Carolina. AGRICULTURAL & ENVIRONMENTAL LETTERS, Vol. 6. https://doi.org/10.1002/ael2.20041

Orozco-Navarrete, B., Song, J., Casanal, A., Sozzani, R., Flors, V., Sanchez-Sevilla, J. F., … Valpuesta, V. (2021). Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response. HORTICULTURE RESEARCH, 8(1). https://doi.org/10.1038/s41438-021-00492-4

Wapshott-Stehli, H. L., & Grunden, A. M. (2021). In situ H2O2 generation methods in the context of enzyme biocatalysis. ENZYME AND MICROBIAL TECHNOLOGY, 145. https://doi.org/10.1016/j.enzmictec.2021.109744

Broeck, L. V., Spurney, R. J., Fisher, A. P., Schwartz, M., Clark, N. M., Nguyen, T. T., … Sozzani, R. (2021). A hybrid model connecting regulatory interactions with stem cell divisions in the root. Quantitative Plant Biology, 2. https://doi.org/10.1017/qpb.2021.1

Yao, L., Swartz, P., Hamilton, P. T., & Clark, A. C. (2021). Remodeling hydrogen bond Interactions results in relaxed specificity of Caspase-3. BIOSCIENCE REPORTS, 41(1). https://doi.org/10.1042/BSR20203495

Arnold, J. W., Whittington, H. D., Dagher, S. F., Roach, J., Azcarate-Peril, M. A., & Bruno-Barcena, J. M. (2021). Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome. FRONTIERS IN NUTRITION, 8. https://doi.org/10.3389/fnut.2021.640100

Blum, U. (2021, March). Pioneers of Allelopathy: XVII. Udo Blum. ALLELOPATHY JOURNAL, Vol. 52, pp. 143–162. https://doi.org/10.26651/allelo.j/2021-52-2-1313

Massi, K. G., Orlando Eugenio, C. U., Franco, A. C., & Hoffmann, W. A. (2021). The effects of tree cover and soil nutrient addition on native herbaceous richness in a neotropical savanna. BIOTROPICA, 53(3), 888–895. https://doi.org/10.1111/btp.12940

Pellegrini, A. F. A., Refsland, T., Averill, C., Terrer, C., Staver, A. C., Brockway, D. G., … Jackson, R. B. (2021). Decadal changes in fire frequencies shift tree communities and functional traits. NATURE ECOLOGY & EVOLUTION, 5(4), 504-+. https://doi.org/10.1038/s41559-021-01401-7

Arnold, J. W., Roach, J., Fabela, S., Moorfield, E., Ding, S., Blue, E., … Azcarate-Peril, M. A. (2021, February 26). The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut (vol 9, 31, 2021). MICROBIOME, Vol. 9. https://doi.org/10.1186/s40168-021-01030-z

Kim, S.-B., Broeck, L., Karre, S., Choi, H., Christensen, S. A., Wang, G.-F., … Balint-Kurti, P. (2021). Analysis of the transcriptomic, metabolomic, and gene regulatory responses to Puccinia sorghi in maize. MOLECULAR PLANT PATHOLOGY, 22(4), 465–479. https://doi.org/10.1111/mpp.13040

Agusti, J., Ramireddy, E., & Brumos, J. (2021, February 12). Editorial: Integration of Hormonal Signals Shaping Root Growth, Development, and Architecture. FRONTIERS IN PLANT SCIENCE, Vol. 12. https://doi.org/10.3389/fpls.2021.634066

Buhrman, G., Enriquez, P., Dillard, L., Baer, H., Truong, V., Grunden, A. M., & Rose, R. B. (2021). Structure, Function, and Thermal Adaptation of the Biotin Carboxylase Domain Dimer from Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase. BIOCHEMISTRY, 60(4), 324–345. https://doi.org/10.1021/acs.biochem.0c00815

Salvato, F., Hettich, R. L., & Kleiner, M. (2021). (D. A. Hogan, Ed.) [Review of Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes]. PLOS PATHOGENS, 17(2). https://doi.org/10.1371/journal.ppat.1009245

Arnold, J. W., Roach, J., Fabela, S., Moorfield, E., Ding, S., Blue, E., … Azcarate-Peril, M. A. (2021). The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut. MICROBIOME, 9(1). https://doi.org/10.1186/s40168-020-00980-0

Sanders, D., Grunden, A., & Dunn, R. R. (2021). A review of clothing microbiology: the history of clothing and the role of microbes in textiles. BIOLOGY LETTERS, 17(1). https://doi.org/10.1098/rsbl.2020.0700

Coughlin, E. M., Shefferson, R. P., Clark, S. L., & Wurzburger, N. (2021). Plant-soil feedbacks and the introduction of Castanea (chestnut) hybrids to eastern North American forests. RESTORATION ECOLOGY, 29(3). https://doi.org/10.1111/rec.13326

Lee, M. R., & Hawkes, C. V. (2021). Widespread co-occurrence of Sebacinales and arbuscular mycorrhizal fungi in switchgrass roots and soils has limited dependence on soil carbon or nutrients. PLANTS PEOPLE PLANET, 3(5), 614–626. https://doi.org/10.1002/ppp3.10181

Brown, D. M., Pawlak, J., & Grunden, A. M. (2021). [Review of Bacterial valorization of pulp and paper industry process streams and waste]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 105(4), 1345–1363. https://doi.org/10.1007/s00253-021-11107-2

Zhao, C., Yaschenko, A., Alonso, J. M., & Stepanova, A. N. (2021). Leveraging synthetic biology approaches in plant hormone research. Current Opinion in Plant Biology. https://doi.org/10.1016/j.pbi.2020.101998

Hinzke, T., Kleiner, M., Meister, M., Schlueter, R., Hentschker, C., Pane-Farre, J., … Markert, S. (2021). Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis. ELIFE, 10. https://doi.org/10.7554/elife.58371

Liu, C., Li, K., Wang, M., Fan, E., Yang, C., Wang, J., … Qu, G. (2021). Qu-2, a robust poplar suspension cell line for molecular biology. JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740. https://doi.org/10.1007/s11676-020-01266-9

Mickelson-Young, L., Wear, E. E., Song, J., Zynda, G. J., Hanley-Bowdoin, L., & Thompson, W. F. (2021). A protocol for genome-wide analysis of DNA replication timing in intact root tips. Methods in Molecular Biology Series.

Leizeaga, A., Hicks, L. C., Manoharan, L., Hawkes, C. V., & Rousk, J. (2021). Drought legacy affects microbial community trait distributions related to moisture along a savannah grassland precipitation gradient. JOURNAL OF ECOLOGY, 109(9), 3195–3210. https://doi.org/10.1111/1365-2745.13550

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdzic, M., Berube, B., … Martienssen, R. A. (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. CURRENT BIOLOGY, 31(3), 591-+. https://doi.org/10.1016/j.cub.2020.10.098

Lee, M. R., & Hawkes, C. V. (2021). Plant and Soil Drivers of Whole-Plant Microbiomes: Variation in Switchgrass Fungi from Coastal to Mountain Sites. PHYTOBIOMES JOURNAL, 5(1), 69–79. https://doi.org/10.1094/PBIOMES-07-20-0056-FI

Pilon, N. A. L., Durigan, G., Rickenback, J., Pennington, R. T., Dexter, K. G., Hoffmann, W. A., … Lehmann, C. E. R. (2021). Shade alters savanna grass layer structure and function along a gradient of canopy cover. JOURNAL OF VEGETATION SCIENCE, 32(1). https://doi.org/10.1111/jvs.12959

Ranieri, P., Sponsel, N., Kizer, J., Rojas‐Pierce, M., Hernández, R., Gatiboni, L., … Stapelmann, K. (2021). Plasma agriculture: Review from the perspective of the plant and its ecosystem. Plasma Processes and Polymers, 9. https://doi.org/10.1002/ppap.202000162

Pilon, N. A. L., Cava, M. G. B., Hoffmann, W. A., Abreu, R. C. R., Fidelis, A., & Durigan, G. (2021). The diversity of post-fire regeneration strategies in the cerrado ground layer. JOURNAL OF ECOLOGY, 109(1), 154–166. https://doi.org/10.1111/1365-2745.13456

Wahlsteen, E., Zhou, W., Xiang, Q., & Rushforth, K. (2021). Rediscovery of the lost little dogwood Cornus wardiana (Cornaceae)-Its phylogenetic and morphological distinction and implication in the origin of the Arctic-Sino-Himalayan disjunction. JOURNAL OF SYSTEMATICS AND EVOLUTION, 59(2), 405–416. https://doi.org/10.1111/jse.12576