Plant and Microbial Biology - 2022

Krings, A., Szakacs, A. D., & Hyland, E. G. (2022). Remnants of the "Grande Savane?" Insights from Soil Organic Matter at Two Sites in the Deep River Triassic Basin of North Carolina. CASTANEA, 87(2), 244–267. https://doi.org/10.2179/0008-7475.87.2.244

Krings, A., & Cabell, H. (2022). Distinguishing Saplings of Pines of Piedmont Upland Grassland Systems. CASTANEA, 87(2), 211–223. https://doi.org/10.2179/0008-7475.87.2.211

Molo, M. S., White, J. B., Cornish, V., Gell, R. M., Baars, O., Singh, R., … Carbone, I. (2022). Asymmetrical lineage introgression and recombination in populations of Aspergillus flavus: Implications for biological control. PLOS ONE, 17(10). https://doi.org/10.1371/journal.pone.0276556

Wang, H., Lu, Y., Zhang, T., Liu, Z., Cao, L., Chang, Q., … Zheng, Z. (2022, December 10). The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion. PLANT PHYSIOLOGY, Vol. 12. https://doi.org/10.1093/plphys/kiac571

Han, Q., Hung, Y.-H., Zhang, C., Bartels, A., Rea, M., Yang, H., … Hsieh, T.-F. (2022). Loss of linker histone H1 in the maternal genome influences DEMETER-mediated demethylation and affects the endosperm DNA methylation landscape. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.1070397

Lu, Y., Li, X., Young, S., Li, X., Linder, E., & Suchoff, D. (2022). Hyperspectral imaging with chemometrics for non-destructive determination of cannabinoids in floral and leaf materials of industrial hemp (Cannabis sativa L.). COMPUTERS AND ELECTRONICS IN AGRICULTURE, 202. https://doi.org/10.1016/j.compag.2022.107387

Blum, U. (2022, December 14). The challenges of using treatment solution properties to determine concentrations for the inhibition of seedling processes by monoprotic phenolic acids. PLANT AND SOIL, Vol. 12. https://doi.org/10.1007/s11104-022-05837-z

McLaughlin, A. A., Hanley-Bowdoin, L., Kennedy, G. G., & Jacobson, A. L. (2022). Vector acquisition and co-inoculation of two plant viruses influences transmission, infection, and replication in new hosts. SCIENTIFIC REPORTS, 12(1). https://doi.org/10.1038/s41598-022-24880-5

Gookin, J. L. L., Strong, S. J. J., Bruno-Barcena, J. M., Stauffer, S. H. H., Williams, S., Wassack, E., … Davidson, G. (2022). Randomized placebo-controlled trial of feline-origin Enterococcus hirae probiotic effects on preventative health and fecal microbiota composition of fostered shelter kittens. FRONTIERS IN VETERINARY SCIENCE, 9. https://doi.org/10.3389/fvets.2022.923792

Bartlett, A., & Kleiner, M. (2022). [Review of Dietary protein and the intestinal microbiota: An understudied relationship]. ISCIENCE, 25(11). https://doi.org/10.1016/j.isci.2022.105313

Beck, A. E., Kleiner, M., & Garrell, A.-K. (2022). Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.910377

Sasaki, M., Barley, J. M., Gignoux-Wolfsohn, S., Hays, C. G., Kelly, M. W., Putnam, A. B., … Cheng, B. S. (2022). Greater evolutionary divergence of thermal limits within marine than terrestrial species. NATURE CLIMATE CHANGE, 12(12), 1175-+. https://doi.org/10.1038/s41558-022-01534-y

Heckman, R. W., Rueda, A., Bonnette, J. E., Aspinwall, M. J., Khasanova, A., Hawkes, C. V., … Fay, P. A. (2022, November 14). Legacies of precipitation influence primary production in Panicum virgatum. OECOLOGIA, Vol. 11. https://doi.org/10.1007/s00442-022-05281-x

Linder, E. R., Young, S., Li, X., Inoa, S. H., & Suchoff, D. H. (2022). The Effect of Harvest Date on Temporal Cannabinoid and Biomass Production in the Floral Hemp (Cannabis sativa L.) Cultivars BaOx and Cherry Wine. HORTICULTURAE, 8(10). https://doi.org/10.3390/horticulturae8100959

Sato, Y., Wippler, J., Wentrup, C., Ansorge, R., Sadowski, M., Gruber-Vodicka, H., … Kleiner, M. (2022). Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. MICROBIOME, 10(1). https://doi.org/10.1186/s40168-022-01372-2

Salvato, F., Vintila, S., Finkel, O. M., Dangl, J. L., & Kleiner, M. (2022). Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes. MOLECULAR PLANT-MICROBE INTERACTIONS, 35(11), 977–988. https://doi.org/10.1094/MPMI-05-22-0116-TA

Wadgymar, S. M., DeMarche, M. L., Josephs, E. B., Sheth, S. N., & Anderson, J. T. (2022). [Review of Local Adaptation: Causal Agents of Selection and Adaptive Trait Divergence]. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS, 53(1), 87–111. https://doi.org/10.1146/annurev-ecolsys-012722-035231

Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Carbone, I., Cornish, V., … Nicolaisen, M. H. (2022, October 6). Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 10. https://doi.org/10.1128/mra.00663-22

Coughlin, A. O., Wooliver, R., & Sheth, S. N. (2022). Populations of western North American monkeyflowers accrue niche breadth primarily via genotypic divergence in environmental optima. ECOLOGY AND EVOLUTION, 12(10). https://doi.org/10.1002/ece3.9434

Hsieh, T.-F., Han, Q., Hung, Y.-H., Zhang, C., Bartels, A., Rea, M., … Xiao, W. (2022, October 20). Loss of Linker Histone H1 in the Maternal Genome Influences DEMETER-Mediated Demethylation and Affects the Endosperm DNA Methylation Landscape. https://doi.org/10.1101/2022.10.17.512625

Edwards, B., Hornstein, E. D., Wilson, N. J., & Sederoff, H. (2022). High-throughput detection of T-DNA insertion sites for multiple transgenes in complex genomes. BMC GENOMICS, 23(1). https://doi.org/10.1186/s12864-022-08918-6

Jie, H., Ma, Y., Xie, D.-Y., & Jie, Y. (2022). Transcriptional and Metabolic Characterization of Feeding Ramie Growth Enhanced by a Combined Application of Gibberellin and Ethrel. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23(19). https://doi.org/10.3390/ijms231912025

Lima Pilon, N. A., Cava, M. G. B., Hoffmann, W. A., Abreu, R. C. R., Rossatto, D. R., & Durigan, G. (2022, September 21). Effects and response of the Cerrado ground-layer to frost along the canopy cover gradient. OECOLOGIA. https://doi.org/10.1007/s00442-022-05259-9

Geyer, C. J., Kulbaba, M. W., Sheth, S. N., Pain, R. E., Eckhart, V. M., & Shaw, R. G. (2022, September 6). Additive genetic variance for lifetime fitness and the capacity for adaptation in an annual plant (vol 73, pg 1746, 2019). EVOLUTION, Vol. 9. https://doi.org/10.1111/evo.14607

Zhou, W., & Xiang, Q.-Y. (2022). Phylogenomics AND biogeography of Castanea (chestnut) and Hamamelis (witch-hazel) - Choosing between RAD-seq and Hyb-Seq approaches. MOLECULAR PHYLOGENETICS AND EVOLUTION, 176. https://doi.org/10.1016/j.ympev.2022.107592

Linder, E. R., Young, S., Li, X., Inoa, S. H., & Suchoff, D. H. (2022). The Effect of Transplant Date and Plant Spacing on Biomass Production for Floral Hemp (Cannabis sativa L.). AGRONOMY-BASEL, 12(8). https://doi.org/10.3390/agronomy12081856

Wang, M., Danz, K., Ly, V., & Rojas-Pierce, M. (2022). Microgravity enhances the phenotype of Arabidopsis zigzag-1 and reduces the Wortmannin-induced vacuole fusion in root cells. NPJ MICROGRAVITY, 8(1). https://doi.org/10.1038/s41526-022-00226-3

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). POPEYE intercellular localization mediates cell-specific iron deficiency responses. PLANT PHYSIOLOGY, Vol. 8. https://doi.org/10.1093/plphys/kiac357

Zuleta-Correa, A., Chinn, M. S., & Bruno-Barcena, J. M. (2022, August 1). Application of raw industrial sweetpotato hydrolysates for butanol production by Clostridium beijerinckii NCIMB 8052. BIOMASS CONVERSION AND BIOREFINERY, Vol. 8. https://doi.org/10.1007/s13399-022-03101-z

Sandy, M., Bui, T. I., Aba, K. S., Ruiz, N., Paszalek, J., Connor, E. W., & Hawkes, C. V. (2022, June 17). Plant Host Traits Mediated by Foliar Fungal Symbionts and Secondary Metabolites. MICROBIAL ECOLOGY, Vol. 6. https://doi.org/10.1007/s00248-022-02057-x

Yaschenko, A. E., Fenech, M., Mazzoni-Putman, S., Alonso, J. M., & Stepanova, A. N. (2022). [Review of Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?]. CURRENT OPINION IN PLANT BIOLOGY, 68. https://doi.org/10.1016/j.pbi.2022.102241

Zhao, Y., Yuan, Z., Wang, S., Wang, H., Chao, Y., Sederoff, R. R., … Niu, B. (2022). Gene sdaB Is Involved in the Nematocidal Activity of Enterobacter ludwigii AA4 Against the Pine Wood Nematode Bursaphelenchus xylophilus. FRONTIERS IN MICROBIOLOGY, 5. https://doi.org/10.3389/fmicb.2022.870519

Liu, B.-B., Ren, C., Kwak, M., Hodel, R. G. J., Xu, C., He, J., … Wen, J. (2022). Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 64(5), 1020–1043. https://doi.org/10.1111/jipb.13246

Chen, H., Neubauer, M., & Wang, J. P. (2022). Enhancing HR Frequency for Precise Genome Editing in Plants. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.883421

Wooliver, R., Vtipilthorpe, E. E., Wiegmann, A. M., & Sheth, S. N. (2022). A viewpoint on ecological and evolutionary study of plant thermal performance curves in a warming world. AOB PLANTS, 14(3). https://doi.org/10.1093/aobpla/plac016

Zhu, Y., Scholle, F., Kisthardt, S. C., & Xie, D.-Y. (2022). <p>Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E</p>. VIROLOGY, 571, 21–33. https://doi.org/10.1016/j.virol.2022.04.005

Rolston, H., Hyman, M., & Semprini, L. (2022, May 12). Single-well push-pull tests evaluating isobutane as a primary substrate for promoting in situ cometabolic biotransformation reactions. BIODEGRADATION, Vol. 5. https://doi.org/10.1007/s10532-022-09987-w

Michellod, D., Bien, T., Birgel, D., Jensen, M., Kleiner, M., Fearn, S., … Liebeke, M. (2022, April 22). De novo phytosterol synthesis in animals (Vol. 4). Vol. 4. https://doi.org/10.1101/2022.04.22.489198

Yao, S., Liu, Y., Zhuang, J., Zhao, Y., Dai, X., Jiang, C., … Xia, T. (2022, May 7). Insights into acylation mechanisms: co-expression of serine carboxypeptidase-like acyltransferases and their non-catalytic companion paralogs. PLANT JOURNAL, Vol. 5. https://doi.org/10.1111/tpj.15782

Yuzuak, S., & Xie, D.-Y. (2022). Anthocyanins from muscadine (Vitis rotundifolia) grape fruit. CURRENT PLANT BIOLOGY, 30. https://doi.org/10.1016/j.cpb.2022.100243

Li, M., Guo, L., Wang, Y., Li, Y., Jiang, X., Liu, Y., … Xia, T. (2022, May 12). Molecular and biochemical characterization of two 4-coumarate: CoA ligase genes in tea plant (Camellia sinensis). PLANT MOLECULAR BIOLOGY, Vol. 109. https://doi.org/10.1007/s11103-022-01269-6

Shin, H., Park, J. E., Park, H. R., Choi, W. L., Yu, S. H., Koh, W., … Huh, J. H. (2022, April 28). Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae. NEW PHYTOLOGIST, Vol. 4. https://doi.org/10.1111/nph.18155

Li, M., He, X., La Hovary, C., Zhu, Y., Dong, Y., Liu, S., … Xie, D.-Y. (2022). A de novo regulation design shows an effectiveness in altering plant secondary metabolism. JOURNAL OF ADVANCED RESEARCH, 37, 43–60. https://doi.org/10.1016/j.jare.2021.06.017

Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Bak, F., Guan, Y., Horn Herms, C., … Nicolaisen, M. H. (2022, April 13). Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 4. https://doi.org/10.1128/mra.00222-22

Tong, H., Chen, H., & Williams, C. M. (2022). Identification of Transcription Factors Regulating SARS-CoV-2 Tropism Factor Expression by Inferring Cell-Type-Specific Transcriptional Regulatory Networks in Human Lungs. VIRUSES-BASEL, 14(4). https://doi.org/10.3390/v14040837

Adhikari, T. B., Aryal, R., Redpath, L. E., Broeck, L., Ashrafi, H., Philbrick, A. N., … Louws, F. J. (2022). RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry. FRONTIERS IN GENETICS, 12. https://doi.org/10.3389/fgene.2021.805771

Blakeley-Ruiz, J. A., & Kleiner, M. (2022). Considerations for constructing a protein sequence database for metaproteomics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952. https://doi.org/10.1016/j.csbj.2022.01.018

Choi, B., Hyeon, D. Y., Lee, J., Long, T. A., Hwang, D., & Hwang, I. (2022, April 15). BTS Is a Negative Regulator for the Cellular Energy Level and the Expression of Energy Metabolism-Related Genes Encoded by Two Organellar Genomes in Leaf Tissues. MOLECULES AND CELLS, Vol. 4. https://doi.org/10.14348/molcells.2022.2029

Mallery, E. L., Yanagisawa, M., Zhang, C., Lee, Y., Robles, L. M., Alonso, J. M., & Szymanski, D. B. (2022). Tandem C2 domains mediate dynamic organelle targeting of a DOCK family guanine nucleotide exchange factor. JOURNAL OF CELL SCIENCE, 135(7). https://doi.org/10.1242/jcs.259825

Noar, R. D., Thomas, E., & Daub, M. E. (2022). [Review of Genetic Characteristics and Metabolic Interactions between Pseudocercospora fijiensis and Banana: Progress toward Controlling Black Sigatoka]. PLANTS-BASEL, 11(7). https://doi.org/10.3390/plants11070948

Noar, R. D., & Thomas, E. (2022, March 31). Genetic Characteristics and Metabolic Interactions between Pseudocercospora fijiensis and Banana: Progress toward Controlling Black Sigatoka. Plants. https://doi.org/https://doi.org/10.3390/plants11070948

Espichán, F., Rojas, R., Quispe, F., Cabanac, G., & Marti, G. (2022). Metabolomic characterization of 5 native Peruvian chili peppers (Capsicum spp.) as a tool for species discrimination. Food Chemistry, 386, 30, 13274. https://doi.org/10.1016/j.foodchem.2022.132704

Evans, S., Allison, S., & Hawkes, C. (2022, March 20). Microbes, memory and moisture: Predicting microbial moisture responses and their impact on carbon cycling. FUNCTIONAL ECOLOGY, Vol. 3. https://doi.org/10.1111/1365-2435.14034

Peng, Y., Dallas, M. M., Ascencio-Ibanez, J. T., Hoyer, J. S., Legg, J., Hanley-Bowdoin, L., … Yin, H. (2022). Early detection of plant virus infection using multispectral imaging and spatial-spectral machine learning. SCIENTIFIC REPORTS, 12(1). https://doi.org/10.1038/s41598-022-06372-8

Ravishankar, E., Booth, R. E., Hollingsworth, J. A., Ade, H., Sederoff, H., DeCarolis, J. F., & Brendan T. O'Connor. (2022, March 10). Organic solar powered greenhouse performance optimization and global economic opportunity. ENERGY & ENVIRONMENTAL SCIENCE, Vol. 15. https://doi.org/10.1039/D1EE03474J

Ortiz, A. C., De Smet, I., Sozzani, R., & Locke, A. M. (2022). Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development. ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 195. https://doi.org/10.1016/j.envexpbot.2021.104768

Zhou, W., Soghigian, J., & Xiang, Q.-Y. J. (2022). A New Pipeline for Removing Paralogs in Target Enrichment Data. SYSTEMATIC BIOLOGY, 71(2), 410–425. https://doi.org/10.1093/sysbio/syab044

Aimone, C. D., Hoyer, J. S., Dye, A. E., Deppong, D. O., Duffy, S., Carbone, I., & Hanley-Bowdoin, L. (2022). An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing. JOURNAL OF VIROLOGICAL METHODS, 300. https://doi.org/10.1016/j.jviromet.2021.114405

Cavigelli, S., Leips, J., Xiang, Q.-Y., Lemke, D., & Konow, N. (2022). Next Steps in Integrative Biology: Mapping Interactive Processes Across Levels of Biological Organization. INTEGRATIVE AND COMPARATIVE BIOLOGY, 61(6), 2066–2074. https://doi.org/10.1093/icb/icab161

Walsh, E. S., Tollison, T. S., Brochu, H. N., Shaw, B. I., Diveley, K. R., Chou, H., … Peng, X. (2022). Single-Cell-Based High-Throughput Ig and TCR Repertoire Sequencing Analysis in Rhesus Macaques. JOURNAL OF IMMUNOLOGY, 208(3), 762–771. https://doi.org/10.4049/jimmunol.2100824

Querns, A., Wooliver, R., Vallejo-Marin, M., & Sheth, S. N. (2022, February 13). The evolution of thermal performance in native and invasive populations of Mimulus guttatus. EVOLUTION LETTERS, Vol. 6. https://doi.org/10.1002/evl3.275

Chen, H., Bullock, D. A., Jr., Alonso, J. M., & Stepanova, A. N. (2022). To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses. PLANTS-BASEL, 11(1). https://doi.org/10.3390/plants11010033

Zhou, W., Harris, A. J., & Xiang, Q.-Y. (2022, May 30). Phylogenomics and biogeography of Torreya (Taxaceae)-Integrating data from three organelle genomes, morphology, and fossils and a practical method for reducing missing data from RAD-seq. JOURNAL OF SYSTEMATICS AND EVOLUTION, Vol. 2. https://doi.org/10.1111/jse.12838

Flake, S. W., Honda, E. A., Pilon, N. A. L., Hoffmann, W. A., & Durigan, G. (2022, January 20). Not all trees can make a forest: Tree species composition and competition control forest encroachment in a tropical savanna. JOURNAL OF ECOLOGY. https://doi.org/10.1111/1365-2745.13820

Thomas, H., Broeck, L., Spurney, R., Sozzani, R., & Frank, M. (2022). Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. PLANT CELL, 34(1), 535–556. https://doi.org/10.1093/plcell/koab246

Wapshott-Stehli, H. L., Myers, B. G., Quesada, M. J. H., Grunden, A., & Stapelmann, K. (2022, February 3). Plasma-driven biocatalysis: In situ hydrogen peroxide production with an atmospheric pressure plasma jet increases the performance of OleT(JE) when compared to adding the same molar amount of hydrogen peroxide in bolus. PLASMA PROCESSES AND POLYMERS, Vol. 2. https://doi.org/10.1002/ppap.202100160

Zhu, J., Yan, X., Liu, S., Xia, X., An, Y., Xu, Q., … Wei, C. (2022, March 4). Alternative splicing of CsJAZ1 negatively regulates flavan-3-ol biosynthesis in tea plants. PLANT JOURNAL, Vol. 1. https://doi.org/10.1111/tpj.15670

Lee‐Yaw, J. A., McCune, J. L., Pironon, S., & Sheth, S. N. (2022). Species distribution models rarely predict the biology of real populations. Ecography. https://doi.org/10.1111/ecog.05877

Preston, J. C., Wooliver, R., Driscoll, H., Coughlin, A., & Sheth, S. N. (2022). Spatial variation in high temperature‐regulated gene expression predicts evolution of plasticity with climate change in the scarlet monkeyflower. Molecular Ecology. https://doi.org/10.1111/mec.16300

Aniento, F., Medina Hernandez, V. S., Dagdas, Y., Rojas-Pierce, M., & Russinova, E. (2022). [Review of Molecular mechanisms of endomembrane trafficking in plants]. PLANT CELL, 34(1), 146–173. https://doi.org/10.1093/plcell/koab235

Tolsma, J. S., Torres, J. J., Richards, J. T., Perera, I. Y., & Doherty, C. J. (2022). Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses. PLANT GRAVITROPISM, Vol. 2368, pp. 301–319. https://doi.org/10.1007/978-1-0716-1677-2_19

Whitaker, B. K., Giauque, H., Timmerman, C., Birk, N., & Hawkes, C. V. (2022). Local Plants, Not Soils, Are the Primary Source of Foliar Fungal Community Assembly in a C4 Grass. Microbial Ecology, 8. https://doi.org/10.1007/s00248-021-01836-2