Works Published in 2007

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Displaying works 21 - 40 of 49 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2007 journal article

High-frequency reversion of geminivirus replication protein mutants during infection

JOURNAL OF VIROLOGY, 81(20), 11005–11015.

By: G. Arguello-Astorga n, J. Ascencio-Ibanez n, M. Dallas n, B. Orozco n & L. Hanley-Bowdoin n

MeSH headings : Arabidopsis / virology; Geminiviridae / genetics; Geminiviridae / physiology; Mosaic Viruses; Mutation, Missense; Plant Diseases / virology; Plant Viruses / genetics; Plant Viruses / physiology; Viral Proteins / genetics; Viral Proteins / metabolism; Viral Proteins / physiology; Virus Replication / genetics
TL;DR: There is strong selection for reversion of the TGMV L148V and CaLCuV L145A mutations but that the nature of the selected revertants is influenced by both the viral background and host components. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Effects of vegetation removal on native understory recovery in an exotic-rich urban forest

JOURNAL OF THE TORREY BOTANICAL SOCIETY, 134(3), 410–419.

By: R. Vidra*, T. Shear n & J. Stucky n

author keywords: exotic species removal; forest restoration; seedbank study; urban forests
TL;DR: Investigation of a forest understory to removal of four common exotic species suggests that repeated removal is required to decrease the importance of exotic species, especially if the site is in close proximity to a source of exotic propagules; and subsequent to exotic removal, native species may not recover sufficiently without supplemental plantings. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Effects and importance of soil wetness and neighbor vegetation on Solidago verna M. A. Curtis ex Torrey & A. Gray (spring-flowering goldenrod) [Asteraceae] transplant survivorship and growth

Effects and importance of soil wetness and neighbor vegetation on Solidago verna M. A. Curtis ex Torrey & A. Gray (spring-flowering goldenrod) [Asteraceae] transplant survivorship and growth. Castanea, 72(4), 205–213.

By: M. Fleming*, J. Stucky n & C. Brownie n

TL;DR: A transplant study to provide information for the plan being developed to mitigate for the impact of the highway construction of S. verna in North Carolina found survival was lowest on soils that experienced ponding or flooding, and managing the transplant population could utilize mowing during those periods when fire is not practical. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Challenges in quantification of ligninolytic enzymes from Phanerochaete chrysosporium cultivation for pretreatment of cotton stalks

Transactions of the ASABE, 50(6), 2347–2354.

By: J. Shi, R. Sharma-Shivappa*, M. Chinn*, R. Dean* & R. Shivappa*

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2007 journal article

Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5 '-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B-6 salvage pathway

PLANT PHYSIOLOGY, 145(3), 985–996.

By: E. Gonzalez n, D. Danehower n & M. Daub n

MeSH headings : Arabidopsis / drug effects; Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Carbon-Nitrogen Lyases; Chromatography, High Pressure Liquid; Cloning, Molecular; Cold Temperature; DNA, Bacterial / genetics; DNA, Plant / genetics; Gene Expression Regulation, Plant; Light; Mannitol / pharmacology; Molecular Structure; Mutagenesis, Insertional; Mutation; Nitrogenous Group Transferases / metabolism; Phenotype; Pyridoxal Kinase / genetics; Pyridoxal Kinase / metabolism; Pyridoxaminephosphate Oxidase / genetics; Pyridoxaminephosphate Oxidase / metabolism; Sodium Chloride / pharmacology; Sucrose / pharmacology; Time Factors; Vitamin B 6 / chemistry; Vitamin B 6 / metabolism; Water
TL;DR: The phenotype, stress responses, vitamer levels, and regulation of the vitamin B6 pathway genes in Arabidopsis (Arabidopsis thaliana) plants mutant in PDX3 and SOS4 are determined. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Identification of genes differentially expressed in the phytopathogenic fungus Cercospora nicotianae between cercosporin toxin-resistant and -susceptible strains

FEMS MICROBIOLOGY LETTERS, 275(2), 326–337.

author keywords: cercosporin resistance; suppressive subtractive hybridization; Cercospora
MeSH headings : Ascomycota / drug effects; Ascomycota / genetics; Ascomycota / metabolism; Drug Resistance, Fungal; Expressed Sequence Tags; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal; Gene Library; Microbial Sensitivity Tests / methods; Molecular Sequence Data; Mutation; Nucleic Acid Hybridization / methods; Perylene / analogs & derivatives; Perylene / pharmacology; Protein Kinase C / antagonists & inhibitors; Sequence Analysis, DNA; Tobacco / microbiology; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR: It is suggested that CRG1 regulates genes involved in pH responses in addition to those involved in toxin resistance and biosynthesis in Cercosporin-resistant wild-type and sensitive strain lacking a transcription factor that regulates resistance. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Two new species and three lectotypifications in the Ibatia-Matelea complex (Apocynaceae : Asclepiadoideae) from northern South America

SYSTEMATIC BOTANY, 32(4), 862–871.

author keywords: Gonolobinae; Matelea fontana; Matelea pacifica; morphology
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Silencing of the aflatoxin gene cluster in a diploid strain of Aspergillus flavus is suppressed by ectopic aflR expression

GENETICS, 176(4), 2077–2086.

By: C. Smith*, C. Woloshuk*, D. Robertson & G. Payne n

MeSH headings : Aflatoxins / genetics; Aspergillus flavus / genetics; Base Sequence; DNA Primers / genetics; DNA, Fungal / genetics; DNA-Binding Proteins / genetics; Diploidy; Fungal Proteins / genetics; Gene Dosage; Gene Expression; Gene Silencing; Genes, Fungal; Multigene Family; Mutation; Sequence Deletion; Transcription Factors / genetics; Transformation, Genetic
TL;DR: Gene expression analysis revealed a form of reversible silencing based on the position of aflR is likely preventing the aflatoxin genes from being expressed in 649 × wild-type diploids, specific to the a flatoxin gene cluster. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Regulation of the Arabidopsis thaliana vitamin B-6 biosynthesis genes by abiotic stress

PLANT PHYSIOLOGY AND BIOCHEMISTRY, 45(2), 152–161.

By: S. Densiow, E. Rueschhoff n & M. Daub n

author keywords: antioxidant; plant abiotic stress; SNZ1; SNO; YaaD; YaaE
MeSH headings : Antioxidants / metabolism; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Arabidopsis Proteins / physiology; Carbon-Nitrogen Lyases; Escherichia coli / metabolism; Gene Expression Regulation, Plant; Genes, Plant; Green Fluorescent Proteins / metabolism; Microscopy, Fluorescence; Nitrogenous Group Transferases / metabolism; Nitrogenous Group Transferases / physiology; Oxidative Stress; Phylogeny; Plant Proteins / metabolism; RNA, Messenger / metabolism; Time Factors; Vitamin B 6 / metabolism
TL;DR: All three PDX1 genes and PDX2 were responsive to abiotic stressors including high light, chilling, drought, and ozone, however, the response ofPDX1.2 was disparate from that of the other PDX genes, showing a lessened response to high light , chilling, and drought, but an increased response to ozone. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Expression profiling on soybean leaves reveals integration of ER- and osmotic-stress pathways

BMC GENOMICS, 8.

By: A. Irsigler*, M. Costa*, P. Zhang n, P. Reis*, R. Dewey n, R. Boston n, E. Fontes*

MeSH headings : DNA, Complementary / genetics; Endoplasmic Reticulum / metabolism; Gene Expression Profiling / methods; Oligonucleotide Array Sequence Analysis; Osmosis; Plant Leaves / genetics; Plant Leaves / metabolism; Reverse Transcriptase Polymerase Chain Reaction; Signal Transduction / genetics; Signal Transduction / physiology; Soybeans / genetics; Soybeans / metabolism
TL;DR: This scenario indicates that polyethylene glycol (PEG)-induced cellular dehydration and ER stress elicited very different up-regulated responses within a 10-h stress treatment regime, and provides a list of candidate regulatory components, which may integrate the osmotic-stress and ER-stress signaling pathways in plants. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis

PLANT CELL, 19(8), 2403–2416.

MeSH headings : Arabidopsis / embryology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Body Patterning; Cell Nucleus / metabolism; Cyclophilins / chemistry; Cyclophilins / genetics; Cyclophilins / metabolism; Flowers / anatomy & histology; Gene Expression Regulation, Plant; Genes, Homeobox; Histones / metabolism; Meristem / metabolism; Methylation; Mutant Proteins / isolation & purification; Mutation / genetics; Organogenesis; Plant Leaves / embryology; Plant Leaves / genetics; Plant Roots / growth & development; Protein Binding; Protein Structure, Tertiary; Protein Transport; Repressor Proteins / metabolism
TL;DR: A WD40 domain cyclophilin, CYCLOPHILIN71 (CYP71), is identified, which functions in gene repression and organogenesis in Arabidopsis thaliana and it is proposed that it serves as a highly conserved histone remodeling factor involved in chromatin-based gene silencing in eukaryotic organisms. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Curtisia (Cornales) from the Eocene of Europe and its phytogeographical significance

Botanical Journal of the Linnean Society, 155(1), 127–134.

author keywords: cornaceae; epacridaceae; fossil; fruit; leucopogon; london clay; palaeobotany
TL;DR: The newly recognized fossil occurrences suggest a Laurasian origin for Curtisia, in conformity with the fossil record for several other genera of the Cornales, and cause us to question whether Epacridaceae were present in the Tertiary of Europe. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Increasing plasma membrane phosphatidylinositol(4,5)bisphosphate biosynthesis increases phosphoinositide metabolism in Nicotiana tabacum

PLANT CELL, 19(5), 1603–1616.

By: Y. Im n, I. Perera n, I. Brglez n, A. Davis n, J. Stevenson-Paulik*, B. Phillippy n, E. Johannes n, N. Allen n, W. Boss n

MeSH headings : Basal Metabolism; Calcium / metabolism; Cell Membrane / enzymology; Cell Membrane / metabolism; Cell Respiration; Green Fluorescent Proteins / metabolism; Humans; Inositol 1,4,5-Trisphosphate / metabolism; Lipid Metabolism; Phosphatidylinositol 4,5-Diphosphate / biosynthesis; Plant Proteins / metabolism; Plants, Genetically Modified; Protein Transport; Recombinant Fusion Proteins / metabolism; Subcellular Fractions / metabolism; Tobacco / cytology; Tobacco / enzymology; Tobacco / genetics; Tobacco / metabolism; Tritium
TL;DR: It is demonstrated that PIPK is flux limiting and that this high rate of PI metabolism increased the energy demands in transgenic tobacco cells. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 review

Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])

[Review of ]. Plant Physiology, 144(4), 1697–1714.

Source: NC State University Libraries
Added: August 6, 2018

2007 article

Arabidopsis phosphatidylinositol phosphate kinase 1 binds F-actin and recruits phosphatidylinositol 4-kinase beta 1 to the actin cytoskeleton (Retracted article. See vol. 284, pg. 16060, 2009)

Davis, A. J., Im, Y. J., Dubin, J. S., Tomer, K. B., & Boss, W. F. (2007, May 11). JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 282, pp. 14121–14131.

By: A. Davis n, Y. Im n, J. Dubin*, K. Tomer* & W. Boss n

MeSH headings : 1-Phosphatidylinositol 4-Kinase / genetics; 1-Phosphatidylinositol 4-Kinase / metabolism; Actins / metabolism; Arabidopsis / enzymology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytoskeleton / metabolism; Glutathione Transferase / genetics; Glutathione Transferase / metabolism; Immunoblotting; Mass Spectrometry; Phosphatidylinositol Phosphates; Phosphotransferases (Alcohol Group Acceptor) / genetics; Phosphotransferases (Alcohol Group Acceptor) / metabolism; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Using artificial canopy gaps to restore Puerto Rican Parrot (Amazona vittata) habitat in tropical timber plantations

FOREST ECOLOGY AND MANAGEMENT, 243(2-3), 169–177.

By: F. Inman n, T. Wentworth n, M. Groom*, C. Brownie n & R. Lea

author keywords: habitat restoration; Hibiscus elatus; tropical timber plantations; Puerto Rico; Puerto Rican Parrot; canopy gaps
TL;DR: The results suggest that restoration of native tree diversity and wildlife habitat in plantations will require continued management to remove non-native species and to promote growth of tree species with high wildlife habitat value. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Temperature effect on skin adhesion, cell wall enzyme activity, lignin content, anthocyanins, growth parameters, and periderm histochemistry of sweetpotato

Journal of the American Society for Horticultural Science, 132(5), 729–738.

By: L. Villavicencio, S. Blankenship, G. Yencho, J. Thomas & C. Raper

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Molecular analysis of the cercosporin biosynthetic gene cluster in Cercospora nicotianae

MOLECULAR MICROBIOLOGY, 64(3), 755–770.

By: H. Chen*, M. Lee*, M. Daub n & K. Chung*

MeSH headings : Ascomycota / genetics; Ascomycota / metabolism; Base Sequence; Blotting, Northern; Chromosome Walking / methods; DNA, Fungal / chemistry; DNA, Fungal / genetics; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal; Gene Order; Genes, Fungal; Genetic Complementation Test; Models, Biological; Molecular Sequence Data; Multigene Family; Mutation; Open Reading Frames / genetics; Perylene / analogs & derivatives; Perylene / metabolism; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; Transcription, Genetic
TL;DR: Ten putative open reading frames flanking the previously characterized CTB1 and CTB3 genes that encode, respectively, the polyketide synthase and a dual methyltransferase/monooxygenase required for cercosporin production are identified. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Mannitol metabolism in the phytopathogenic fungus Alternaria alternata

FUNGAL GENETICS AND BIOLOGY, 44(4), 258–268.

author keywords: mannitol cycle; mannitol dehydrogenase; mannitol 1-phosphate 5-dehydrogenase; polyols; fungi
MeSH headings : Alternaria / enzymology; Alternaria / growth & development; Culture Media; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Deletion; Genes, Fungal; Mannitol / metabolism; Mannitol Dehydrogenases / genetics; Mannitol Dehydrogenases / metabolism; Plant Diseases / microbiology; Substrate Specificity; Sugar Alcohol Dehydrogenases / genetics; Sugar Alcohol Dehydrogenases / metabolism; Tobacco / microbiology
TL;DR: Enzymatic assays demonstrate that mannitol 1-phosphate 5-dehydrogenase and mann Capitol dehydrogenase are essential enzymes inMannitol metabolism in A. alternata, but do not support mannitor metabolism operating as a cycle. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development

PLANT MOLECULAR BIOLOGY, 65(1-2), 163–175.

By: C. Jordan n, W. Shen n, L. Hanley-Bowdoin n & D. Robertson n

author keywords: DNA VIGS; retinoblastoma-related protein; cell death; geminivirus; hyperplasia; cell differentiation
MeSH headings : Cell Death; DNA, Viral / genetics; Geminiviridae / genetics; Gene Expression Regulation, Plant / genetics; Gene Silencing; Genetic Vectors / genetics; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / metabolism; Retinoblastoma / genetics; Retinoblastoma / metabolism; Tobacco / cytology; Tobacco / genetics; Tobacco / growth & development
TL;DR: The results suggest that either inappropriate activation of the cell cycle is lethal in plants or that RBR has other functions, unrelated to the cell Cycle, and demonstrate that continual transcription of RBR is necessary for cell survival. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

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