Works Published in 2019
Displaying works 21 - 40 of 91 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2019 journal article
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.
MBio, 10(6).
Ed(s): D. Distel & E. Ruby
author keywords: host-microbe interactions; symbiosis; holobiont; chemosynthesis; hydrothermal vents; metaproteomics
MeSH headings : Adaptation, Biological; Animal Nutritional Physiological Phenomena; Animals; Aquatic Organisms; Energy Metabolism; Metabolic Networks and Pathways; Metabolome; Microbiota; Oxidation-Reduction; Polychaeta / metabolism; Polychaeta / microbiology; Polychaeta / ultrastructure; Proteome; Proteomics / methods; Seawater; Symbiosis
TL;DR:
This study studied the deep-sea Riftia pachyptila symbiosis, a model association in which the tubeworm host is associated with only one phylotype of endosymbiotic bacteria and completely depends on this sulfur-oxidizing symbiont for nutrition, and identified both metabolic interaction processes and interactions that serve to maintain the symbiotic balance.
(via Semantic Scholar)
mbio.asm.org (publisher PDF)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science; OpenAlex)
Source: ORCID
Added: January 30, 2020
2019 journal article
Phylogenomics, co-evolution of ecological niche and morphology, and historical biogeography of buckeyes, horsechestnuts, and their relatives (Hippocastaneae, Sapindaceae) and the value of RAD-Seq for deep evolutionary inferences back to the Late Cretaceous
Molecular Phylogenetics and Evolution, 106726.
author keywords: Aesculus; Biogeography; ddRAD-seq; Hippocastaneae; Niche and morphological evolution; Phylogenomics
MeSH headings : Aesculus / classification; Aesculus / genetics; Bayes Theorem; Biological Evolution; Ecosystem; Fossils / history; History, Ancient; Phylogeny; Phylogeography; RNA, Plant / chemistry; RNA, Plant / classification; RNA, Plant / metabolism; RNA-Seq
TL;DR:
Aesculus is supported as a relic of the boreotropical flora and subsequent intercontinental spread of the genus through the Bering land bridge and the North Atlantic land Bridge and the results suggest that biogeographic isolation and niche divergence may have played important roles in driving morphological evolution and lineage divergence in Aesculus.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Crossref, ORCID
Added: January 14, 2020
2019 article
Community turnover by composition and climatic affinity across scales in an alpine system
AMERICAN JOURNAL OF BOTANY.
author keywords: alpine ecology; beta diversity; climatic niche mean; elevation gradient; GLORIA; Great Basin; Global Observation Research Initiative in Alpine Environments; species turnover; community assembly; White Mountains
MeSH headings : Biodiversity; California; Climate Change; Ecosystem; Microclimate; Plants
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Source: ORCID
Added: January 13, 2020
2019 article
tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks
PLANT JOURNAL.
author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: January 13, 2020
2019 journal article
Vegetation classification at the association level under the China Vegetation Classification System: an example of six Stipa steppe formations in China
JOURNAL OF PLANT ECOLOGY, 12(6), 1009–1024.
author keywords: association; China Vegetation Classification System; consistent classification section; cluster analysis; ordination; Stipa steppe
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: January 6, 2020
2019 journal article
Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks
NATURE COMMUNICATIONS, 10.
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Asymmetric Cell Division / genetics; Asymmetric Cell Division / physiology; Cell Differentiation; Cell Division; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Stem Cells / cytology; Stem Cells / metabolism; Transcription Factors / metabolism; Transcriptome; Ubiquitination / genetics; Ubiquitins / genetics
TL;DR:
In the Arabidopsis root, a stem-cell-ubiquitous gene, TESMIN-LIKE CXC2 (TCX2), controls stem cell division by regulating stem cell-type specific networks and orchestrates the coordinated division of different stem cell types.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: December 30, 2019
2019 journal article
Lisinopril Preserves Physical Resilience and Extends Life Span in a Genotype-Specific Manner in Drosophila melanogaster
JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES, 74(12), 1844–1852.
author keywords: Angiotensin; Aging; Locomotion; Muscle; Genetic variation
MeSH headings : Angiotensin-Converting Enzyme Inhibitors / pharmacology; Animals; Drosophila Proteins / metabolism; Drosophila melanogaster / drug effects; Drosophila melanogaster / genetics; Genotype; Lisinopril / pharmacology; Longevity / drug effects; Male; Peptidyl-Dipeptidase A / metabolism; Phenotype; Transcriptome
TL;DR:
It is demonstrated that skeletal muscle-specific Ance, the Drosophila ortholog of ACE, is involved in physical decline and genetic variation in phenotypic responses to an ACE inhibitor is demonstrated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: December 30, 2019
2019 article
An improved plant toolset for high-throughput recombineering
Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.
TL;DR:
A recombineering-based tagging system that brings together the convenience of the classical transgenic approaches and the high degree of confidence in the obtained results provided by the direct chromosomal tagging achievable by genome editing strategies is developed.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2019 journal article
Use of Unconventional Mixed Acetone-Butanol-Ethanol Solvents for Anthocyanin Extraction from Purple-Fleshed Sweetpotatoes
Food Chemistry.
author keywords: Ipomoea batatas; Anthocyanidins; Phenolics; Cyanidin; Peonidin; Temperature; Flour
MeSH headings : Acetone / chemistry; Anthocyanins / analysis; Anthocyanins / chemistry; Anthocyanins / isolation & purification; Butanols / chemistry; Chemical Fractionation / methods; Ethanol / chemistry; Ipomoea batatas / chemistry; Phenols / isolation & purification; Plant Extracts / chemistry; Solvents / chemistry
TL;DR:
Results indicated that unconventional diluted solvent mixes containing acetone, butanol, and ethanol were superior or equally efficient for extracting anthocyanins when compared to commonly used concentrated extractants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: December 11, 2019
2019 journal article
Aerobic cometabolism of 1,4-dioxane by isobutane-utilizing microorganisms including Rhodococcus rhodochrous strain 21198 in aquifer microcosms: Experimental and modeling study
SCIENCE OF THE TOTAL ENVIRONMENT, 694.
author keywords: 1,4-dioxane; Cometabolism; Inhibition; Numerical modeling: Groundwater contamination
MeSH headings : Biodegradation, Environmental; Butanes / metabolism; Colorado; Dioxanes / metabolism; Ecosystem; Groundwater / chemistry; Groundwater / microbiology; Rhodococcus / metabolism; Water Microbiology; Water Pollutants, Chemical / analysis; Water Pollutants, Chemical / metabolism
TL;DR:
Results showed that, over time and with sufficient inorganic nutrients, biostimulation of native microorganisms with isobutane was just as effective as bioaugmentation with strain 21198 to achieve 1,4-D transformation in the microcosms.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: December 9, 2019
2019 chapter
Production and Conservation of Starter Cultures: From “Backslopping” to Controlled Fermentations
In A. R. In: Azcarate-Peril M. (Ed.), How Fermented Foods Feed a Healthy Gut Microbiota: A Nutrition Continuum.
Ed(s): A. In: Azcarate-Peril M.
author keywords: Backslopping; Food preservation; Food biotransformation; Fermentation; Traditional fermentation; Industrial fermentation; Culture production
TL;DR:
New methods of mixed-strain starter culture production, particularly immobilized cell reactors, present attractive alternatives to the more traditional batch reactors due to their ability to produce a more robust and diverse starter all in one step.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: December 9, 2019
2019 book
How Fermented Foods Feed a Healthy Gut Microbiota: A Nutrition Continuum
TL;DR:
Select bacteria of the maternal digestive microbiota may access the mammary glands through oraland entero-mammary pathways by involving mononuclear cells for their transport, which would provide new opportunities for manipulating maternal-fetal microbiota, reducing the risk of preterm birth or infant diseases.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: December 9, 2019
2019 journal article
Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division
Frontiers in Plant Science, 10.
Contributors: E. Buckner n, I. Madison n, H. Chou n, A. Matthiadis n, C. Melvin n, R. Sozzani n , C. Williams n, T. Long n
author keywords: light sheet imaging; image analysis; cell cycle progression; heat stress and iron deficiency stresses; combined stresses
TL;DR:
It is observed that iron deficiency, in combination with temporary heat stress, suppresses the expression of iron deficiency-responsive pPYE::LUC (POPEYE::luciferase) and pBTS::L UC (BRUTUS::lUC) reporter genes and root growth was suppressed less under combined iron deficiency and heat stress than under either single stress condition.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Crossref
Added: December 4, 2019
2019 journal article
Epigenetics Regulates Reproductive Development in Plants
Plants, 8(12), 564.
author keywords: DNA methylation; dynamics; Polycomb group proteins; histone modifications; epigenetics; chromatin; siRNA; RdDM; gametogenesis; seed development
TL;DR:
Recent progress of epigenetic changes that affect chromatin structure, such as DNA methylation, polycomb group proteins, histone modifications, and small RNA pathways in regulating plant reproduction are reviewed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Crossref
Added: December 3, 2019
2019 article
The case for the continued use of the genus name Mimulus for all monkeyflowers
Lowry, D. B., Sobel, J. M., Angert, A. L., Ashman, T.-L., Baker, R. L., Blackman, B. K., … Yuan, Y.-W. (2019, August). TAXON, Vol. 68, pp. 617–623.
TL;DR:
This research presents a novel probabilistic procedure called “spot-spot analysis” that combines X-ray diffraction analysis and 3D image analysis to characterize the response of the immune system to foreign substance abuse.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: December 2, 2019
2019 journal article
Untargeted Metabolomics of Nicotiana tabacum Grown in United States and India Characterizes the Association of Plant Metabolomes With Natural Climate and Geography
Frontiers in Plant Science, 10.
author keywords: climate change; continent; geography; metabolomics; nicotine; tobacco; non-polar metabolite; polar metabolite
TL;DR:
Comparison revealed that nicotine levels were affected by weather conditions, nevertheless, its trend in leaves was independent of two geographical locations and weather changes, suggesting that climate and geographical variation significantly differentiated the tobacco metabolism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: November 25, 2019
2019 journal article
One thousand plant transcriptomes and the phylogenomics of green plants
NATURE, 574(7780), 679-+.
Contributors: J. Leebens-Mack, M. Barker, E. Carpenter, M. Deyholos, M. Gitzendanner, S. Graham, I. Grosse, Z. Li
TL;DR:
It is found that large expansions of gene families preceded the origins of green plants, land plants and vascular plants, whereas whole-genome duplications are inferred to have occurred repeatedly throughout the evolution of flowering plants and ferns.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: November 18, 2019
2019 journal article
Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development
Plant Biotechnology Journal, 18(4), 929–943.
MeSH headings : Bayes Theorem; Fragaria / genetics; Fragaria / growth & development; Fruit / growth & development; Gene Expression Regulation, Plant; Gene Silencing; MADS Domain Proteins / genetics; Metabolome; Plant Proteins / genetics; Plants, Genetically Modified
TL;DR:
The inference of a gene regulatory network, based on a dynamic Bayesian approach, among the genes differentially expressed in the transgenic receptacles at the white and red stages, identified the genes KAN1, DIV, ZFN2 and GTE7 as putative targets of FaMADS9.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: November 11, 2019
2019 journal article
Resurrection of ancestral effector caspases identifies novel networks for evolution of substrate specificity.
The Biochemical Journal.
MeSH headings : Animals; Caspases, Effector / chemistry; Caspases, Effector / genetics; Caspases, Effector / metabolism; Evolution, Molecular; Humans; Mammals / classification; Mammals / genetics; Phylogeny; Protein Conformation; Substrate Specificity
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: November 6, 2019
2019 article
Comment on "The global tree restoration potential"
Veldman, J. W., Aleman, J. C., Alvarado, S. T., Anderson, T. M., Archibald, S., Bond, W. J., … Zaloumis, N. P. (2019, October 18). SCIENCE, Vol. 366.
MeSH headings : Carbon; Carbon Sequestration; Climate Change; Soil; Trees
TL;DR:
It is shown that Bastin et al. state that the restoration potential of new forests globally is 205 gigatonnes of carbon, conclude that “global tree restoration is the authors' most effective climate change solution to date,” and state that climate change will drive the loss of 450 million hectares of existing tropical forest by 2050 are incorrect.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
1. No Poverty
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: November 4, 2019
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