Works Published in 2020

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Displaying works 21 - 40 of 111 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2020 journal article

RNA-seq of aboveground sporophyte's transcriptome of Huperzia serrata and transcriptional understanding of early steps associated with huperzine biosynthesis in forest

CURRENT PLANT BIOLOGY, 24.

By: Q. Peng*, H. Long, C. Du*, J. Li* & D. Xie n

author keywords: Huperssia serrata; Huperzine; RNA-seq; Transcriptome; Forest
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID
Added: January 25, 2021

2020 journal article

BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(51), 32750–32756.

author keywords: Arabidopsis; receptor kinase; cell cycle; SHORT-ROOT; CLE peptide
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plant Cells / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / metabolism; Plants, Genetically Modified; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR: It is shown that key cell divisions that generate the plant root are controlled by cell-to-cell signaling peptides which act through plant-specific receptor kinases to control expression of a specific cyclinD cell cycle regulatory gene. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 article

Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth

Van Norman, J. M., Strader, L. C., & Sozzani, R. (2020, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 57, pp. A1–A3.

By: J. Van Norman*, L. Strader* & R. Sozzani n

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 journal article

Caspases from scleractinian coral show unique regulatory features

JOURNAL OF BIOLOGICAL CHEMISTRY, 295(43), 14578–14591.

By: S. Shrestha*, J. Tung*, R. Grinshpon n, P. Swartz n, P. Hamilton n, B. Dimos*, L. Mydlarz*, A. Clark*

author keywords: caspase; cysteine protease; allosteric regulation; substrate specificity; coral apoptosis; coral immunity; functional divergence; substrate selection; CARD-caspase; apoptosis
MeSH headings : Amino Acid Sequence; Animals; Anthozoa / chemistry; Anthozoa / cytology; Anthozoa / enzymology; Anthozoa / metabolism; Apoptosis; Caspases / chemistry; Caspases / metabolism; Coral Reefs; Crystallography, X-Ray; Enzyme Activation; Humans; Models, Molecular; Protein Conformation; Protein Domains; Sequence Alignment; Substrate Specificity
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: January 14, 2021

2020 journal article

Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(46).

TL;DR: This work deeply sequenced two pairs of widely used infectious clones (4 plasmids) of the bipartite begomoviruses African cassava mosaic virus (ACMV) and East AfricanCassava mosaic Cameroon virus (EACMCV). (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID
Added: January 11, 2021

2020 journal article

Bacterial exposure leads to variable mortality but not a measurable increase in surface antimicrobials across ant species

PEERJ, 8.

By: O. Halawani n, R. Dunn n, A. Grunden n & A. Smith n

author keywords: Entomopathogen; Metapleural gland; Social immunity; Bacterial exposure; Social insects; Sociobiology; Antimicrobial
TL;DR: The results demonstrate the susceptibility to bacteria is varied across ant species, and variation may correlate with an ant species’ use of surface antimicrobials, as significant mortality effects in species which also were producing antimicrobial compounds are found. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: January 11, 2021

2020 journal article

Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities

MICROBIOME, 8(1).

By: M. Kleiner n, B. Bushnell*, K. Sanderson*, L. Hooper* & B. Duerkop*

MeSH headings : Animals; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Gastrointestinal Microbiome / genetics; Gene Transfer, Horizontal / genetics; Genomics; Male; Mice; Mice, Inbred C57BL; Microbiota / genetics; Reproducibility of Results; Transduction, Genetic
TL;DR: A DNA sequencing-based “transductomics” approach that detects and characterizes microbial DNA transferred via transduction and provides insights into real-time ongoing horizontal gene transfer is developed and could be used to understand how phenotypes spread within microbiomes. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: December 21, 2020

2020 journal article

Genetic insights into the evolution of genera with the eastern Asia–eastern North America floristic disjunction: a transcriptomics analysis

American Journal of Botany, 107(12), 1736–1748.

author keywords: eastern Asia– eastern North America; floristic disjunction; molecular evolution; species richness anomaly
MeSH headings : Asia; Evolution, Molecular; Asia, Eastern; North America; Phylogeny; Transcriptome
TL;DR: The data support the hypothesis that greater species richness in EA than ENA is due to factors other than an overall increase in rates of molecular evolution in EA, and suggest that genes across multiple gene ontology categories are evolving at similar rates under purifying selection in species in both regions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: December 21, 2020

2020 review

Phytopathogenic Cercosporoid Fungi-From Taxonomy to Modern Biochemistry and Molecular Biology

[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 21(22).

author keywords: cercosporoid fungi; Cercospora s; lat; cercosporin; pathogenesis; enzymes; biotechnological application
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Ascomycota / metabolism; Biosynthetic Pathways / physiology; Gene Expression Regulation, Fungal / physiology; Plant Diseases / microbiology
TL;DR: Phytopathogenic cercosporoid fungi have been investigated comprehensively due to their important role in causing plant diseases, with less of a focus on molecular or biochemical issues. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: December 21, 2020

2020 journal article

Draft Genome Sequence of Lactobacillus rhamnosus NCB 441, Isolated from Egyptian White Domiati Cheese

Microbiology Resource Announcements.

Ed(s): K. Stedman

TL;DR: The draft genome sequence of Lactobacillus rhamnosus NCB 441, which was isolated from pickled white cheese samples gathered at Farafra Oasis in New Valley Governorate, Egypt, is reported, with a G+C content of 46.7%. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: ORCID
Added: December 3, 2020

2020 journal article

Docking Characterization and in vitro Inhibitory Activity of Flavan-3-ols and Dimeric Proanthocyanidins Against the Main Protease Activity of SARS-Cov-2

Frontiers in Plant Science, 11.

By: Y. Zhu n & D. Xie n

author keywords: flavan-3-ols; flavan-3-ol gallates; procyanidins; COVID-19; green tea; muscadine grape; cacao; dark chocolate
TL;DR: The findings indicate that on the one hand, the structural features of flavan-3-ols are closely associated with the affinity scores; on the otherhand, the galloylation and oligomeric types of flavours are critical in creating the inhibitory activity against the Mpro activity. (via Semantic Scholar)
Sources: Crossref, NC State University Libraries
Added: December 1, 2020

2020 journal article

Effects of Plant-Soil Feedback on Switchgrass Productivity Related to Microbial Origin

Agronomy.

By: J. Kiniry*, C. Arthur*, K. Banick*, F. Fritschi*, Y. Wu* & C. Hawkes n

author keywords: Panicum virgatum; bioenergy; perennial crop; geographic variation
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
Source: ORCID
Added: December 1, 2020

2020 journal article

Genotype by environment interaction for gene expression in Drosophila melanogaster

NATURE COMMUNICATIONS, 11(1).

MeSH headings : Animals; Drosophila melanogaster / genetics; Female; Gene Expression; Gene Expression Regulation; Gene Regulatory Networks; Gene-Environment Interaction; Genes, Insect; Genetic Variation; Genotype; Male; Quantitative Trait Loci; RNA-Seq; Temperature; Transcriptome
TL;DR: It is shown that developing under different temperatures changes the genetic architecture of regulatory variation in Drosophila melanogaster gene expression yet the co- expression network remains robust, and data suggest that stabilizing selection on gene expression may promote co-expression network robustness. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: November 30, 2020

2020 journal article

Transcriptomic and life history responses of the mayfly Neocloeon triangulifer to chronic diel thermal challenge

SCIENTIFIC REPORTS, 10(1).

By: H. Chou n, D. Jima n, D. Funk*, J. Jackson*, B. Sweeney* & D. Buchwalter n

MeSH headings : Animals; Ephemeroptera / genetics; Ephemeroptera / physiology; Gene Expression Regulation; Heat-Shock Response / genetics; Heat-Shock Response / physiology; Temperature; Transcriptome
TL;DR: The chronically stressed population had reduced expression of transcripts related to ATP synthesis, mitochondrial electron chain functions, gluconeogenesis and glycolytic processes while transcripts associated with cell adhesion, synaptic vesicle transport, regulation of membrane potential and lipid biosynthesis increased. (via Semantic Scholar)
Source: Web Of Science
Added: November 30, 2020

2020 review

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease

[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.

By: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

Contributors: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

author keywords: microbial interaction; biological control agents; soil-borne disease; consortia; microbiome and community
TL;DR: The current state of the use of single strain and multi-strain biological control consortia in the management of soil-borne diseases and potential mechanisms used by microbial components to improve the disease suppressing efficacy are summarized. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: November 16, 2020

2020 journal article

A resurrection study reveals limited evolution of phenology in response to recent climate change across the geographic range of the scarlet monkeyflower

Ecology and Evolution.

author keywords: drought escape; Erythranthe; evolutionary rescue; flowering time; geographic range; Mimulus
TL;DR: It is suggested that rapid evolution of phenology will not rescue populations in decline from recent climate change, and the potential for the evolution of alternative drought strategies and phenotypic plasticity to buffer M. cardinalis populations from changing climate is examined. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science; OpenAlex)
15. Life on Land (Web of Science)
Source: ORCID
Added: November 14, 2020

2020 journal article

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

PLOS GENETICS, 16(10).

By: E. Wear n, J. Song, G. Zynda, L. Mickelson-Young n, C. LeBlanc*, T. Lee n, D. Deppong n, G. Allen n ...

MeSH headings : Cell Nucleus / drug effects; Cell Nucleus / genetics; Centromere / drug effects; Centromere / genetics; DNA Replication / drug effects; DNA Replication / genetics; DNA Replication Timing / drug effects; DNA Replication Timing / genetics; DNA, Plant / drug effects; DNA, Plant / genetics; Deoxyuridine / analogs & derivatives; Deoxyuridine / pharmacology; Endocytosis / drug effects; Meristem / drug effects; Meristem / genetics; Mitosis / drug effects; Mitosis / genetics; Nucleosomes / drug effects; Plant Roots / drug effects; Plant Roots / genetics; Plant Roots / growth & development; S Phase / genetics; Zea mays / genetics; Zea mays / growth & development
Sources: Web Of Science, NC State University Libraries
Added: November 9, 2020

2020 journal article

Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds

FRONTIERS IN MICROBIOLOGY, 11.

By: M. Wang n, A. Eyre n, M. Thon*, Y. Oh n & R. Dean n

author keywords: rice; seed and seedling; microbiome; diversity; driving factors
TL;DR: The microbiome in rice seedlings derived directly from seeds was identified, characterized and compared to the microbiome of the seed, finding greater abundance and diversity were detected for the microbiome associated with roots compared to shoots and with more epiphytes than endophytes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
Source: Web Of Science
Added: October 19, 2020

2020 journal article

Tree canopy cover constrains the fertility-diversity relationship in plant communities of the southeastern United States

ECOLOGY, 101(10).

author keywords: Appalachian forests; biodiversity; community assembly; forest structure; hierarchical Bayesian; Longleaf Pine woodlands; multiscale sampling; Piedmont forests; productivity-diversity relationship; scale dependence; species richness
MeSH headings : Biodiversity; Forests; Humans; Plants; Southeastern United States; Trees
TL;DR: Using data from a large network of multi-scale vegetation plots across forests and woodlands of the southeastern US, significant evidence is found for the scale dependent, joint constraints of forest structure and soil resources on the distribution of vascular plant species richness. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: October 12, 2020

2020 journal article

Wood construction more strongly shapes deadwood microbial communities than spatial location over 5 years of decay

ENVIRONMENTAL MICROBIOLOGY, 22(11), 4702–4717.

MeSH headings : Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Carya / microbiology; Forests; Fungi / classification; Fungi / genetics; Fungi / isolation & purification; Microbial Interactions; Microbiota / physiology; Missouri; Quercus / microbiology; Time Factors; Wood / classification; Wood / microbiology
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: October 5, 2020

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