Works Published in 2021

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Displaying works 21 - 40 of 120 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 journal article

To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses

Plants.

By: H. Chen n, D. Bullock n, J. Alonso n & A. Stepanova n

author keywords: ethylene; abiotic stress; hormone crosstalk; growth and defense tradeoff
Source: ORCID
Added: December 24, 2021

2021 journal article

Exploratory analysis of Spirulina platensis LB 2340 growth in varied concentrations of anaerobically digested pig effluent (ADPE)

HELIYON, 7(9).

By: M. Baker n, S. Blackman n, E. Cooper n, K. Smartt n, D. Walser n, M. Boland n, P. Kolar n, A. Beck n, M. Chinn n

author keywords: Spirulina; Cyanobacteria; Swine effluent; Anaerobic digestion; Biomass production
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 article

Spatial variation in high temperature-regulated gene expression predicts evolution of plasticity with climate change in the scarlet monkeyflower

Preston, J. C., Wooliver, R., Driscoll, H., Coughlin, A., & Sheth, S. N. (2021, December 12). MOLECULAR ECOLOGY, Vol. 12.

author keywords: climate change; differential gene expression; Mimulus cardinalis; phenotypic plasticity; space by time substitution; thermal adaptation
MeSH headings : Adaptation, Physiological / genetics; Climate Change; Gene Expression; Humans; Mimulus / genetics; Temperature
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 journal article

Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens

MICROBIOLOGY SPECTRUM, 9(2).

By: Y. Tan*, C. Wang*, T. Schneider*, H. Li*, R. Souza*, X. Tang*, K. Grimm*, T. Hsieh n ...

co-author countries: Brazil 🇧🇷 China 🇨🇳
author keywords: Liberibacter pathogens; Huanglongbing; zebra chip; toxins; prophages; pathogenesis; evolution; comparative genomics
MeSH headings : Bacterial Toxins / chemistry; Bacterial Toxins / genetics; Bacterial Toxins / metabolism; Citrus / microbiology; Endophytes / classification; Endophytes / genetics; Endophytes / physiology; Evolution, Molecular; Genome, Bacterial; Genomics; Liberibacter / chemistry; Liberibacter / classification; Liberibacter / genetics; Liberibacter / physiology; Phylogeny; Plant Diseases / microbiology
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 journal article

Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes

MICROBIOLOGY SPECTRUM, 9(3).

By: A. Mordant n & M. Kleiner n

Ed(s): C. Khursigara

author keywords: gut microbes; intestinal microbiome; LC-MS/MS; metaproteomics; microbiota; sample preservation; storage
MeSH headings : Animals; Bacteria / chemistry; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Chromatography, Liquid; Feces / chemistry; Feces / microbiology; Female; Gastrointestinal Microbiome; Male; Mice; Mice, Inbred C57BL; Peptides / chemistry; Preservation, Biological / methods; Proteomics / methods; Tandem Mass Spectrometry
Sources: ORCID, Web Of Science
Added: December 16, 2021

2021 article

Epigenetic modification associated with climate regulates betulin biosynthesis in birch

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). JOURNAL OF FORESTRY RESEARCH, Vol. 12.

By: J. Wang*, B. Chen*, S. Ali*, T. Zhang*, Y. Wang*, H. Zhang*, L. Wang*, Y. Zhang* ...

co-author countries: China 🇨🇳 India 🇮🇳
author keywords: Epigenetics; DNA methylation; Betulin; bHLH9 transcription factor; Hormesis; Climate change; Secondary metabolite
Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 review

Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 64.

By: C. Hodgens n, B. Akpa* & T. Long n

author keywords: Iron homeostasis; Simulation-based inference (SBI); Inclusivity
MeSH headings : Biological Transport; Gene Expression Regulation, Plant; Homeostasis; Iron / metabolism; Plants / genetics; Plants / metabolism
Sources: ORCID, Web Of Science
Added: November 27, 2021

2021 journal article

Bioinformatic Teaching Resources - For Educators, by Educators - Using KBase, a Free, User-Friendly, Open Source Platform

FRONTIERS IN EDUCATION, 6.

By: E. Dow*, E. Wood-Charlson*, S. Biller*, T. Paustian*, A. Schirmer*, C. Sheik*, J. Whitham n, R. Krebs n ...

author keywords: computational biology; bioinformatics; data science; STEM education and learning; undergraduate education
Source: Web Of Science
Added: November 23, 2021

2021 journal article

Hydraulic segmentation does not protect stems from acute water loss during fire

TREE PHYSIOLOGY, 41(10), 1785–1793.

By: W. Hoffmann n, A. Rodrigues n, N. Uncles n & L. Rossi n

author keywords: burn; cavitation; combustion; heat plume; Magnolia grandiflora; scorch; water transport
MeSH headings : Fires; Plant Leaves; Plant Stems; Trees; Water; Xylem
Source: Web Of Science
Added: November 15, 2021

2021 article

Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses

ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718.

By: E. Maggie Sogin, M. Kleiner n, C. Borowski*, H. Gruber-Vodicka* & N. Dubilier*

co-author countries: Germany 🇩🇪
author keywords: chemosymbiosis; host-microbe associations; nutritional interactions; adaptations to symbiosis; metabolism; thiotroph; methanotroph
MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Ecosystem; Hydrothermal Vents; Phylogeny; Symbiosis / physiology
Sources: Web Of Science, ORCID
Added: November 15, 2021

2021 article

Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity

Qiao, H., & Stepanova, A. N. (2021, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 63.

MeSH headings : Adaptation, Physiological; Plants / genetics
Sources: Web Of Science, ORCID
Added: November 15, 2021

2021 journal article

Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering

MSYSTEMS, 6(4).

By: J. Rocca n, M. Muscarella*, A. Peralta*, D. Izabel-Shen & M. Simonin*

co-author countries: France 🇫🇷 Sweden 🇸🇪
author keywords: biostimulants; community coalescence; community inoculants; managed ecosystems; microbiome engineering
Source: Web Of Science
Added: November 15, 2021

2021 journal article

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

By: C. Lin n, Y. Sun*, J. Song n, H. Chen n, R. Shi n, C. Yang n, J. Liu n, S. Tunlaya-Anukit n ...

co-author countries: China 🇨🇳
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
Source: Web Of Science
Added: November 8, 2021

2021 article

Plant Biology Research: What Is Next?

Stepanova, A. N. (2021, September 30). FRONTIERS IN PLANT SCIENCE, Vol. 12.

By: A. Stepanova n

author keywords: plant biology; plant physiology; synthetic biology; translational research; data reproducibility
Sources: Web Of Science, ORCID
Added: November 8, 2021

2021 journal article

Fire and drought: Shifts in bark investment across a broad geographical scale for Neotropical savanna trees

BASIC AND APPLIED ECOLOGY, 56, 110–121.

By: M. Scalon*, D. Rossatto*, I. Oliveras*, R. Miatto*, E. Gray*, F. Chaves Bicalho Domingos, F. Brum*, M. Carlucci* ...

co-author countries: Australia 🇦🇺 Brazil 🇧🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧
author keywords: bark; biome transition; Cerrado; fire ecology; phellogen; water storage
Source: Web Of Science
Added: November 8, 2021

2021 journal article

Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology

ISCIENCE, 24(12).

co-author countries: Canada 🇨🇦
Sources: ORCID, Web Of Science
Added: November 7, 2021

2021 journal article

A New Type of Satellite Associated with Cassava Mosaic Begomoviruses

JOURNAL OF VIROLOGY, 95(21).

By: C. Aimone n, L. De Leon, M. Dallas n, J. Ndunguru, J. Ascencio-Ibanez n & L. Hanley-Bowdoin n

author keywords: Arabidopsis; begomovirus; cassava mosaic disease; SEGS
MeSH headings : Begomovirus / classification; Begomovirus / genetics; Begomovirus / isolation & purification; Begomovirus / pathogenicity; DNA, Viral / genetics; Genome, Viral; Manihot / virology; Mutation; Phylogeny; Plant Diseases / virology; Recombination, Genetic; Satellite Viruses / classification; Satellite Viruses / genetics; Satellite Viruses / isolation & purification; Satellite Viruses / pathogenicity; Tobacco / virology
Sources: Web Of Science, ORCID
Added: November 1, 2021

2021 journal article

Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA

JOURNAL OF BACTERIOLOGY, 203(21).

By: S. Smith*, F. Salvato n, A. Garikipati*, M. Kleiner n & A. Septer*

author keywords: type VI secretion systems; Aliivibrio fischeri; microbial interactions; genomic island; symbiosis
MeSH headings : Aliivibrio fischeri / genetics; Aliivibrio fischeri / metabolism; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression Regulation, Bacterial / physiology; Genotype; Mutation; Promoter Regions, Genetic; Type VI Secretion Systems / genetics; Type VI Secretion Systems / metabolism
Sources: Web Of Science, ORCID
Added: November 1, 2021

2021 journal article

Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses

MICROBIOLOGY SPECTRUM, 9(2).

By: M. Jensen n, J. Wippler* & M. Kleiner n

co-author countries: Germany 🇩🇪

Ed(s): J. Gralnick

author keywords: mass spectrometry; 1D-LC-MS/MS; microbial communities; preservation methods; microbiome; field sampling; environmental microbiology
MeSH headings : Animals; Annelida / microbiology; Annelida / physiology; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Physiological Phenomena; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Phylogeny; Preservation, Biological / methods; Proteomics; Symbiosis
Sources: ORCID, Web Of Science
Added: October 28, 2021

2021 journal article

Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis

NATURE COMMUNICATIONS, 12(1).

MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Cell Division; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Proteomics; Seedlings / metabolism; Signal Transduction; Steroids, Heterocyclic; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: October 26, 2021

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