Works Published in 2021
Displaying works 21 - 40 of 120 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2021 journal article
To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses
Plants.
author keywords: ethylene; abiotic stress; hormone crosstalk; growth and defense tradeoff
TL;DR:
The crosstalk between ethylene and other plant hormones in tipping the balance between plant growth and abiotic stress responses is described.
(via Semantic Scholar)
www.mdpi.com (publisher PDF)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Source: ORCID
Added: December 24, 2021
2021 journal article
Exploratory analysis of Spirulina platensis LB 2340 growth in varied concentrations of anaerobically digested pig effluent (ADPE)
HELIYON, 7(9).
author keywords: Spirulina; Cyanobacteria; Swine effluent; Anaerobic digestion; Biomass production
TL;DR:
This study demonstrates the potential for S. platensis to further improve the treatment efficacy of anaerobic digestion systems, and highlights that further testing is required to investigate possible carbon availability, chemical inhibition, and overall nutrient reduction in ADPE.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: December 20, 2021
2021 article
Spatial variation in high temperature-regulated gene expression predicts evolution of plasticity with climate change in the scarlet monkeyflower
Preston, J. C., Wooliver, R., Driscoll, H., Coughlin, A., & Sheth, S. N. (2021, December 12). MOLECULAR ECOLOGY, Vol. 12.
author keywords: climate change; differential gene expression; Mimulus cardinalis; phenotypic plasticity; space by time substitution; thermal adaptation
MeSH headings : Adaptation, Physiological / genetics; Climate Change; Gene Expression; Humans; Mimulus / genetics; Temperature
TL;DR:
It is demonstrated that reduced phenotypic plasticity can evolve with warming and that spatial and temporal changes in plasticity predict one another.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: December 20, 2021
2021 journal article
Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens
MICROBIOLOGY SPECTRUM, 9(2).
author keywords: Liberibacter pathogens; Huanglongbing; zebra chip; toxins; prophages; pathogenesis; evolution; comparative genomics
MeSH headings : Bacterial Toxins / chemistry; Bacterial Toxins / genetics; Bacterial Toxins / metabolism; Citrus / microbiology; Endophytes / classification; Endophytes / genetics; Endophytes / physiology; Evolution, Molecular; Genome, Bacterial; Genomics; Liberibacter / chemistry; Liberibacter / classification; Liberibacter / genetics; Liberibacter / physiology; Phylogeny; Plant Diseases / microbiology
TL;DR:
An in-depth comparative phylogenomic analysis of Liberibacter pathogens along with their ancestral nonpathogenic species identified the prophage loci and several novel toxins that are evolutionarily associated with the emergence of the pathogens.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: December 20, 2021
2021 journal article
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes
MICROBIOLOGY SPECTRUM, 9(3).
Ed(s): C. Khursigara
author keywords: gut microbes; intestinal microbiome; LC-MS/MS; metaproteomics; microbiota; sample preservation; storage
MeSH headings : Animals; Bacteria / chemistry; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Chromatography, Liquid; Feces / chemistry; Feces / microbiology; Female; Gastrointestinal Microbiome; Male; Mice; Mice, Inbred C57BL; Peptides / chemistry; Preservation, Biological / methods; Proteomics / methods; Tandem Mass Spectrometry
TL;DR:
This study evaluated methods to preserve fecal microbiome samples for metaproteomics analyses when flash-freezing is not possible and suggests that preservation at room temperature in RNAlater or an RN alater-like solution performs as well as freezing for the preservation of intestinal microbiome samples before metaproteinomics analyses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 16, 2021
2021 article
Epigenetic modification associated with climate regulates betulin biosynthesis in birch
Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). JOURNAL OF FORESTRY RESEARCH, Vol. 12.
author keywords: Epigenetics; DNA methylation; Betulin; bHLH9 transcription factor; Hormesis; Climate change; Secondary metabolite
TL;DR:
The role of environmental signals to induce epigenetic changes that result in betulin production is highlighted, possibly helping to develop resilient plants to combat ongoing climate change and enhance secondary metabolite production.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
13. Climate Action
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: December 13, 2021
2021 review
Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 64.
author keywords: Iron homeostasis; Simulation-based inference (SBI); Inclusivity
MeSH headings : Biological Transport; Gene Expression Regulation, Plant; Homeostasis; Iron / metabolism; Plants / genetics; Plants / metabolism
TL;DR:
This work examines recent advances in the understanding of cellular responses to Fe deficiency and uses intracellular mechanisms of Fe homeostasis to discuss how formalizing cell biology knowledge via a mathematical model can advance discovery even when quantitative data is limited.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: November 27, 2021
2021 journal article
Bioinformatic Teaching Resources - For Educators, by Educators - Using KBase, a Free, User-Friendly, Open Source Platform
FRONTIERS IN EDUCATION, 6.
author keywords: computational biology; bioinformatics; data science; STEM education and learning; undergraduate education
TL;DR:
The utility of KBase as a platform for bioinformatics education is demonstrated, and a set of modular, adaptable, and customizable instructional units for teaching concepts in Genomics, Metagenomics, Pangenomics, and Phylogenetics are presented.
(via Semantic Scholar)
Source: Web Of Science
Added: November 23, 2021
2021 journal article
Hydraulic segmentation does not protect stems from acute water loss during fire
TREE PHYSIOLOGY, 41(10), 1785–1793.
author keywords: burn; cavitation; combustion; heat plume; Magnolia grandiflora; scorch; water transport
MeSH headings : Fires; Plant Leaves; Plant Stems; Trees; Water; Xylem
TL;DR:
The results indicate that the fire-plume hypothesis can be expanded to include a wide range of burning conditions experienced by plants, and high rates of water loss are sustained during burning, even when leaves are killed or completely consumed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: November 15, 2021
2021 article
Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses
ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718.
author keywords: chemosymbiosis; host-microbe associations; nutritional interactions; adaptations to symbiosis; metabolism; thiotroph; methanotroph
MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Ecosystem; Hydrothermal Vents; Phylogeny; Symbiosis / physiology
TL;DR:
A review of the phylogenetic and metabolic diversity of these symbioses and selected research directions that could advance the understanding of the processes that shaped the evolutionary and ecological success of these associations are highlighted.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 15, 2021
2021 article
Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity
Qiao, H., & Stepanova, A. N. (2021, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 63.
MeSH headings : Adaptation, Physiological; Plants / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 15, 2021
2021 journal article
Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering
MSYSTEMS, 6(4).
author keywords: biostimulants; community coalescence; community inoculants; managed ecosystems; microbiome engineering
TL;DR:
The community coalescence framework is adopted, which integrates metacommunity theory and meta-ecosystem dynamics, and the prevalence of these coalescence events within microbial systems is highlighted to better predict microbial community dynamics and responses to disturbances.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
Source: Web Of Science
Added: November 15, 2021
2021 journal article
Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa
FRONTIERS IN PLANT SCIENCE, 12.
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
TL;DR:
It is proposed that Ptr4CL/PtrHCT complexes modulate the metabolic flux of CoA ligation for monolignol biosynthesis during wood formation in P. trichocarpa.
(via Semantic Scholar)
Source: Web Of Science
Added: November 8, 2021
2021 article
Plant Biology Research: What Is Next?
Stepanova, A. N. (2021, September 30). FRONTIERS IN PLANT SCIENCE, Vol. 12.
author keywords: plant biology; plant physiology; synthetic biology; translational research; data reproducibility
TL;DR:
I present my personal perspective on what the immediate questions and the biggest longer-term issues in plant science are, and suggest some themes and directions for future research in plant biology.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: November 8, 2021
2021 journal article
Fire and drought: Shifts in bark investment across a broad geographical scale for Neotropical savanna trees
BASIC AND APPLIED ECOLOGY, 56, 110–121.
author keywords: bark; biome transition; Cerrado; fire ecology; phellogen; water storage
TL;DR:
The idea that investing in inner bark thickness and bark moisture may be the most advantageous strategy in plant communities that suffer from high evaporative demand during a long period and are at a high risk of fire is supported.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: November 8, 2021
2021 journal article
Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology
ISCIENCE, 24(12).
TL;DR:
Diverse photosystem antennae proteins, and high-affinity terminal oxidase, compared with other soda lake cyanobacteria, appear to contribute to the success of Ca.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: November 7, 2021
2021 journal article
A New Type of Satellite Associated with Cassava Mosaic Begomoviruses
JOURNAL OF VIROLOGY, 95(21).
author keywords: Arabidopsis; begomovirus; cassava mosaic disease; SEGS
MeSH headings : Begomovirus / classification; Begomovirus / genetics; Begomovirus / isolation & purification; Begomovirus / pathogenicity; DNA, Viral / genetics; Genome, Viral; Manihot / virology; Mutation; Phylogeny; Plant Diseases / virology; Recombination, Genetic; Satellite Viruses / classification; Satellite Viruses / genetics; Satellite Viruses / isolation & purification; Satellite Viruses / pathogenicity; Tobacco / virology
TL;DR:
SEGS-2, which was originally isolated from cassava crops displaying severe and atypical CMD symptoms in Tanzanian fields, is a novel begomovirus satellite that can compromise the development of durable CMD resistance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: November 1, 2021
2021 journal article
Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA
JOURNAL OF BACTERIOLOGY, 203(21).
author keywords: type VI secretion systems; Aliivibrio fischeri; microbial interactions; genomic island; symbiosis
MeSH headings : Aliivibrio fischeri / genetics; Aliivibrio fischeri / metabolism; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression Regulation, Bacterial / physiology; Genotype; Mutation; Promoter Regions, Genetic; Type VI Secretion Systems / genetics; Type VI Secretion Systems / metabolism
TL;DR:
A model whereby T6SS expression requires conserved structural proteins, in addition to the essential regulator TasR, and this ability to self-regulate may be a strategy to activate T 6SS expression upon transfer of T6 SS-encoding elements into a new bacterial host is proposed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: November 1, 2021
2021 journal article
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses
MICROBIOLOGY SPECTRUM, 9(2).
Ed(s): J. Gralnick
author keywords: mass spectrometry; 1D-LC-MS/MS; microbial communities; preservation methods; microbiome; field sampling; environmental microbiology
MeSH headings : Animals; Annelida / microbiology; Annelida / physiology; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Physiological Phenomena; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Phylogeny; Preservation, Biological / methods; Proteomics; Symbiosis
TL;DR:
This study shows that RNAlater can serve as a low-hazard, easy-to-transport alternative to flash freezing for field preservation of samples for metaproteomic analyses, and recommendsRNAlater for protein preservation of field-collected samples targeted for meetaproteomics analyses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: October 28, 2021
2021 journal article
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis
NATURE COMMUNICATIONS, 12(1).
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Cell Division; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Proteomics; Seedlings / metabolism; Signal Transduction; Steroids, Heterocyclic; Transcription Factors / metabolism
TL;DR:
By integrating multiple omics datasets and inferring networks, the authors profile BR signaling in Arabidopsis and characterize BRONTOSAURUS, a BR-regulated transcription factor that impacts cell division in roots.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: October 26, 2021
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