Plant and Microbial Biology
College of Agriculture and Life Sciences
Works Published in 2021
Displaying works 21 - 40 of 116 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2021 journal article
Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Liberibacter Pathogens
MICROBIOLOGY SPECTRUM, 9(2).
author keywords: Liberibacter pathogens; Huanglongbing; zebra chip; toxins; prophages; pathogenesis; evolution; comparative genomics
MeSH headings : Bacterial Toxins / chemistry; Bacterial Toxins / genetics; Bacterial Toxins / metabolism; Citrus / microbiology; Endophytes / classification; Endophytes / genetics; Endophytes / physiology; Evolution, Molecular; Genome, Bacterial; Genomics; Liberibacter / chemistry; Liberibacter / classification; Liberibacter / genetics; Liberibacter / physiology; Phylogeny; Plant Diseases / microbiology
europepmc.org (repository)
Sources: Web Of Science, ORCID
Added: December 20, 2021
2021 journal article
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes
MICROBIOLOGY SPECTRUM, 9(3).
Ed(s): C. Khursigara
author keywords: gut microbes; intestinal microbiome; LC-MS/MS; metaproteomics; microbiota; sample preservation; storage
MeSH headings : Animals; Bacteria / chemistry; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Proteins / chemistry; Chromatography, Liquid; Feces / chemistry; Feces / microbiology; Female; Gastrointestinal Microbiome; Male; Mice; Mice, Inbred C57BL; Peptides / chemistry; Preservation, Biological / methods; Proteomics / methods; Tandem Mass Spectrometry
Sources: ORCID, Web Of Science
Added: December 16, 2021
2021 article
Epigenetic modification associated with climate regulates betulin biosynthesis in birch
Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). JOURNAL OF FORESTRY RESEARCH, Vol. 12.
author keywords: Epigenetics; DNA methylation; Betulin; bHLH9 transcription factor; Hormesis; Climate change; Secondary metabolite
Sources: Web Of Science, ORCID
Added: December 13, 2021
2021 review
Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 64.
author keywords: Iron homeostasis; Simulation-based inference (SBI); Inclusivity
MeSH headings : Biological Transport; Gene Expression Regulation, Plant; Homeostasis; Iron / metabolism; Plants / genetics; Plants / metabolism
Sources: ORCID, Web Of Science
Added: November 27, 2021
2021 journal article
Bioinformatic Teaching Resources - For Educators, by Educators - Using KBase, a Free, User-Friendly, Open Source Platform
FRONTIERS IN EDUCATION, 6.
author keywords: computational biology; bioinformatics; data science; STEM education and learning; undergraduate education
Source: Web Of Science
Added: November 23, 2021
2021 journal article
Hydraulic segmentation does not protect stems from acute water loss during fire
TREE PHYSIOLOGY, 41(10), 1785–1793.
author keywords: burn; cavitation; combustion; heat plume; Magnolia grandiflora; scorch; water transport
MeSH headings : Fires; Plant Leaves; Plant Stems; Trees; Water; Xylem
Source: Web Of Science
Added: November 15, 2021
2021 article
Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses
ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021, Vol. 75, pp. 695–718.
author keywords: chemosymbiosis; host-microbe associations; nutritional interactions; adaptations to symbiosis; metabolism; thiotroph; methanotroph
MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Ecosystem; Hydrothermal Vents; Phylogeny; Symbiosis / physiology
Sources: Web Of Science, ORCID
Added: November 15, 2021
2021 article
Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity
Qiao, H., & Stepanova, A. N. (2021, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 63.
MeSH headings : Adaptation, Physiological; Plants / genetics
Sources: Web Of Science, ORCID
Added: November 15, 2021
2021 journal article
Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering
MSYSTEMS, 6(4).
author keywords: biostimulants; community coalescence; community inoculants; managed ecosystems; microbiome engineering
Source: Web Of Science
Added: November 15, 2021
2021 journal article
Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa
FRONTIERS IN PLANT SCIENCE, 12.
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
Source: Web Of Science
Added: November 8, 2021
2021 article
Plant Biology Research: What Is Next?
Stepanova, A. N. (2021, September 30). FRONTIERS IN PLANT SCIENCE, Vol. 12.
author keywords: plant biology; plant physiology; synthetic biology; translational research; data reproducibility
Sources: Web Of Science, ORCID
Added: November 8, 2021
2021 journal article
Fire and drought: Shifts in bark investment across a broad geographical scale for Neotropical savanna trees
BASIC AND APPLIED ECOLOGY, 56, 110–121.
author keywords: bark; biome transition; Cerrado; fire ecology; phellogen; water storage
Source: Web Of Science
Added: November 8, 2021
2021 journal article
Proteome and strain analysis of cyanobacterium Candidatus "Phormidium alkaliphilum" reveals traits for success in biotechnology
ISCIENCE, 24(12).
Sources: ORCID, Web Of Science
Added: November 7, 2021
2021 journal article
A New Type of Satellite Associated with Cassava Mosaic Begomoviruses
JOURNAL OF VIROLOGY, 95(21).
author keywords: Arabidopsis; begomovirus; cassava mosaic disease; SEGS
MeSH headings : Begomovirus / classification; Begomovirus / genetics; Begomovirus / isolation & purification; Begomovirus / pathogenicity; DNA, Viral / genetics; Genome, Viral; Manihot / virology; Mutation; Phylogeny; Plant Diseases / virology; Recombination, Genetic; Satellite Viruses / classification; Satellite Viruses / genetics; Satellite Viruses / isolation & purification; Satellite Viruses / pathogenicity; Tobacco / virology
Sources: Web Of Science, ORCID
Added: November 1, 2021
2021 journal article
Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA
JOURNAL OF BACTERIOLOGY, 203(21).
author keywords: type VI secretion systems; Aliivibrio fischeri; microbial interactions; genomic island; symbiosis
MeSH headings : Aliivibrio fischeri / genetics; Aliivibrio fischeri / metabolism; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Gene Expression Regulation, Bacterial / physiology; Genotype; Mutation; Promoter Regions, Genetic; Type VI Secretion Systems / genetics; Type VI Secretion Systems / metabolism
Sources: Web Of Science, ORCID
Added: November 1, 2021
2021 journal article
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses
MICROBIOLOGY SPECTRUM, 9(2).
Ed(s): J. Gralnick
author keywords: mass spectrometry; 1D-LC-MS/MS; microbial communities; preservation methods; microbiome; field sampling; environmental microbiology
MeSH headings : Animals; Annelida / microbiology; Annelida / physiology; Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Bacterial Physiological Phenomena; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Phylogeny; Preservation, Biological / methods; Proteomics; Symbiosis
Sources: ORCID, Web Of Science
Added: October 28, 2021
2021 journal article
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis
NATURE COMMUNICATIONS, 12(1).
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Cell Division; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Proteomics; Seedlings / metabolism; Signal Transduction; Steroids, Heterocyclic; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: October 26, 2021
2021 journal article
A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants
CELL HOST & MICROBE, 29(9), 1393-+.
MeSH headings : Argonaute Proteins / genetics; Argonaute Proteins / metabolism; Calcium / metabolism; Calcium Signaling / genetics; Calmodulin / metabolism; Cucumovirus / pathogenicity; Endonucleases / metabolism; Geminiviridae / pathogenicity; MicroRNAs / metabolism; Plant Diseases / prevention & control; Plant Diseases / virology; Plants; Potyviridae / pathogenicity; RNA Interference / physiology; RNA, Small Interfering / genetics; RNA-Dependent RNA Polymerase / metabolism; Ribonuclease III / genetics; Ribonuclease III / metabolism; Tobacco / genetics; Tobacco / virology; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: October 26, 2021
2021 journal article
Characterizing past fire occurrence in longleaf pine ecosystems with the Mid-Infrared Burn Index and a Random Forest classifier
FOREST ECOLOGY AND MANAGEMENT, 500.
author keywords: Fire modeling; Prescribed fire; Pinus palustris; Pyrodiversity; Rare plant management; Threatened, endangered and at-risk species
Source: Web Of Science
Added: October 12, 2021
2021 article
Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification
MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 47–65.
author keywords: Gene regulatory network inference; RNA sequencing; Bioinformatics; Network visualization
MeSH headings : Algorithms; Amino Acid Motifs / genetics; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation / genetics; Gene Regulatory Networks / genetics; Multigene Family; RNA-Seq / methods; Software; Spatio-Temporal Analysis; Workflow
Sources: Web Of Science, ORCID
Added: October 4, 2021
