Works Published in 2004
Displaying works 41 - 60 of 63 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2004 journal article
Establishment of rapidly proliferating rice cell suspension culture and its characterization by fluorescence-activated cell sorting analysis
PLANT MOLECULAR BIOLOGY REPORTER, 22(3), 259–267.
author keywords: cell suspension culture; FACS; nuclei isolation; Oryza sativa L.; pectinase
TL;DR:
The studies described here demonstrate that NB2P culture can be a powerful tool for studying many important plant processes, including DNA replication and cell cycle-related pathways.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2004 journal article
A defective signal peptide in a 19-kD alpha-zein protein causes the unfolded protein response and an opaque endosperm phenotype in the maize De*-B30 mutant
PLANT PHYSIOLOGY, 134(1), 380–387.
MeSH headings : Amino Acid Sequence; Base Sequence; DNA, Complementary / genetics; DNA, Plant / genetics; Genes, Plant; Molecular Sequence Data; Molecular Weight; Mutation; Phenotype; Plants, Genetically Modified; Protein Folding; Protein Sorting Signals / genetics; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Sequence Homology, Amino Acid; Zea mays / chemistry; Zea mays / genetics; Zein / chemistry; Zein / genetics
TL;DR:
Results are consistent with the hypothesis that the De*-B30 mutation causes a defective signal peptide in a 19-kD α-zein protein.
(via Semantic Scholar)
www.plantphysiol.org (publisher PDF)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Red clover necrotic mosaic virus replication proteins accumulate at the endoplasmic reticulum
VIROLOGY, 320(2), 276–290.
author keywords: RCNMV; polymerase; green fluorescent protein; endoplasmic reticulum; co-localization; Tombusviridae; confocal microscopy
MeSH headings : Endoplasmic Reticulum / metabolism; Endoplasmic Reticulum / virology; Green Fluorescent Proteins; Luminescent Proteins / genetics; Luminescent Proteins / metabolism; Microfilament Proteins / genetics; Microfilament Proteins / metabolism; Microscopy, Confocal; Muscle Proteins; Plants, Genetically Modified; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Tobacco / virology; Tombusviridae / genetics; Tombusviridae / metabolism; Tombusviridae / pathogenicity; Trifolium / virology; Viral Proteins / genetics; Viral Proteins / metabolism; Virus Replication
TL;DR:
Independent accumulation in, and perturbation of, the ER suggests that p27 and p88 function together in the replication complex, the first report of a member of the Tombusviridae replicating in association with the ER.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Oxidation of methyl tert-butyl ether by alkane hydroxylase in dicyclopropylketone-induced and n-octane-grown Pseudomonas putida GPo1
Applied and Environmental Microbiology, 70(8), 4544–4550.
MeSH headings : Culture Media; Cyclopropanes / metabolism; Cyclopropanes / pharmacology; Cytochrome P-450 CYP4A / biosynthesis; Cytochrome P-450 CYP4A / genetics; Enzyme Induction; Gene Expression Regulation, Bacterial; Kinetics; Methyl Ethers / metabolism; Octanes / metabolism; Oxidation-Reduction; Pseudomonas putida / enzymology; Pseudomonas putida / genetics; Pseudomonas putida / growth & development
TL;DR:
Kinetic studies with strain GPo1 grown on n-octane or rich medium with DCPK suggest that MTBE-oxidizing activity may have previously gone undetected in n- octane-grown cells because of the unusually high Ks value for MTBE.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
2004 journal article
Identifying adaptor contamination when mining DNA sequence data
BIOTECHNIQUES, 37(2), 194-+.
MeSH headings : Artifacts; DNA Mutational Analysis / methods; Databases, Genetic; Genetic Variation; Information Storage and Retrieval / methods; Oligonucleotides / genetics; Sequence Alignment / methods; Sequence Analysis, DNA / methods
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Functional complementation between the PDX1 vitamin B-6 biosynthetic gene of Cercospora nicotianae and pdxJ of Escherichia coli
FEBS LETTERS, 564(1-2), 143–146.
author keywords: SNZ; YaaD; SOR1; PYROA; pyridoxal-5 '-phosphate; pyridoxamine
MeSH headings : Ascomycota / genetics; Cloning, Molecular; Enzymes / physiology; Escherichia coli Proteins / genetics; Escherichia coli Proteins / physiology; Fungal Proteins / genetics; Fungal Proteins / physiology; Genes, Fungal; Genetic Complementation Test; Ligases / genetics; Ligases / physiology; Oxidoreductases; Pyridoxine / biosynthesis; Transformation, Genetic; Vitamin B 6 / biosynthesis
TL;DR:
The PDX1 gene of the alternative B6 pathway encodes a protein responsible for synthesis of the pyridoxine ring, which is likely to be responsible for de novo vitamin B6 biosynthesis in Escherichia coli.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2004 journal article
Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 70(8), 4702–4710.
Contributors: J. Bruno-Bárcena* , J. Andrus*, S. Libby*, T. Klaenhammer n & H. Hassan n
MeSH headings : Cloning, Molecular; Humans; Hydrogen Peroxide / pharmacology; Intestines / microbiology; Lactobacillus / classification; Lactobacillus / drug effects; Lactobacillus / enzymology; Lactobacillus / genetics; Oxidative Stress / drug effects; Protein Biosynthesis; Streptococcus / enzymology; Streptococcus / genetics; Superoxide Dismutase / genetics; Superoxide Dismutase / metabolism; Transcription, Genetic
TL;DR:
The data show that MnSOD protects cells against hydrogen peroxide by removing O2·− and preventing the redox cycling of iron and is the first report of a sodA from S. thermophilus being expressed in other lactic acid bacteria.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2004 journal article
Constraints to seedling success of savanna and forest trees across the savanna-forest boundary
OECOLOGIA, 140(2), 252–260.
author keywords: carbohydrate; cerrado; fire; tropical forest; water potential
MeSH headings : Analysis of Variance; Brazil; Carbohydrates / analysis; Disasters; Environment; Plant Leaves / physiology; Plant Roots / chemistry; Seedlings / growth & development; Species Specificity; Trees; Water / analysis
TL;DR:
Compared field and nursery experiments to compare seedling establishment success, predawn leaf water potential, biomass allocation, and root carbohydrate concentration of congeneric species found that savanna species had greater root: shoot ratios and root total nonstructural carbohydrate (TNC) concentration, particularly among evergreen genera.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2004 patent
Method of suppressing gene expression in plants
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
2004 journal article
Geminivirus VIGS of endogenous genes requires SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants
PLANT JOURNAL, 38(6), 1004–1014.
author keywords: geminivirus; gene silencing; Arabidopsis; DNA VIGS; RNA-dependent RNA polymerase
MeSH headings : Arabidopsis / genetics; Arabidopsis / virology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; DNA, Viral / metabolism; Geminiviridae / physiology; Gene Expression Regulation, Plant / physiology; Gene Silencing / physiology; Mutation; Plants, Genetically Modified
TL;DR:
It is demonstrated that SGS2/SDE1 and SGS3 are needed for endogenous gene silencing from DNA viruses, and suggest that S GS2/ SDE1 may reduce geminivirus symptoms by targeting viral mRNAs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018
2004 patent
Transgenic plants with increased calcium stores
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
2004 journal article
Root and shoot growth periodicity of Kalmia latifolia 'Sarah' and Ilex crenata 'Compacta'
HortScience, 39(2), 243–247.
Source: NC State University Libraries
Added: August 6, 2018
2004 journal article
Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems
PLANT CELL, 16(6), 1478–1489.
MeSH headings : AGAMOUS Protein, Arabidopsis / genetics; Alleles; Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Flowers / genetics; Flowers / metabolism; Gene Expression Regulation, Plant; Genes, Plant / genetics; Meristem / genetics; Meristem / metabolism; Molecular Sequence Data; Mutation / genetics; Phenotype; Protein Binding; Protein Structure, Tertiary; Repressor Proteins / chemistry; Repressor Proteins / genetics; Repressor Proteins / metabolism
TL;DR:
It is shown that the floral phenotype of blr mutants is caused by derepression of AG, suggesting that BLR functions as a transcription repressor, and the findings will facilitate the identification of regulatory targets of other BELL proteins and help determine their biological functions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2004 journal article
Characterization of bacteriophage KVP40 and T4 RNA ligase 2
VIROLOGY, 319(1), 141–151.
author keywords: bacteriophage; KVP40; T4 RNA ligase 2
MeSH headings : Adenosine Monophosphate / metabolism; Adenosine Triphosphate / metabolism; Amino Acid Sequence; Bacteriophages / enzymology; Carbohydrates / analysis; Molecular Sequence Data; RNA / chemistry; RNA / metabolism; RNA Caps / chemistry; RNA Caps / metabolism; RNA Ligase (ATP) / classification; RNA Ligase (ATP) / genetics; RNA Ligase (ATP) / metabolism; Recombinant Proteins / metabolism; Sequence Alignment; Viral Proteins / classification; Viral Proteins / genetics; Viral Proteins / metabolism
TL;DR:
The ATP-dependent "capping" of RNA with AMP by Rnl2 is reminiscent of the capping of eukaryotic mRNA with GMP by GTP:RNA guanylyltransferase and suggests an evolutionary connection between bacteriophage Rnl 2 and eukARYotic RNA capping enzymes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
Induction of methyl Tertiary butyl ether (MTBE)-oxidizing activity in Mycobacterium vaccae JOB5 by MTBE
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 70(2), 1023–1030.
MeSH headings : Biodegradation, Environmental; Carbohydrate Metabolism; Carbon / metabolism; Carboxylic Acids / metabolism; Culture Media; Gene Expression Regulation, Bacterial; Methyl Ethers / metabolism; Nontuberculous Mycobacteria / growth & development; Nontuberculous Mycobacteria / metabolism; Oxidation-Reduction
TL;DR:
Experiments with acid-grown cells suggested induction of MTBE-oxidizing activity by MTBE is subject to catabolite repression, and the results of this study are discussed in terms of their potential implications towards the understanding of the role of cometabolism in MTBE and TBA biodegradation in gasoline-contaminated environments.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: August 6, 2018
2004 journal article
Impact of the invasive alien grass Melinis minutiflora at the savanna-forest ecotone in the Brazilian Cerrado
DIVERSITY AND DISTRIBUTIONS, 10(2), 99–103.
author keywords: alien species; biological invasions; exotic species; fire; savanna; tropical gallery forest
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2004 journal article
A novel motif in geminivirus replication proteins interacts with the plant retinoblastoma-related protein
JOURNAL OF VIROLOGY, 78(9), 4817–4826.
MeSH headings : Amino Acid Motifs; Amino Acid Sequence; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Geminiviridae / metabolism; Geminiviridae / pathogenicity; Solanum lycopersicum / virology; Molecular Sequence Data; Mutation; Plant Diseases / virology; Plant Leaves / virology; Plant Proteins / metabolism; Retinoblastoma Protein / metabolism; Tobacco / virology; Two-Hybrid System Techniques; Viral Proteins / chemistry; Viral Proteins / genetics; Viral Proteins / metabolism; Virus Replication
TL;DR:
Results suggest that helix 4 and the conserved leucine residue are part of a pRBR-binding interface in begomovirus replication proteins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
Interaction between a geminivirus replication protein and the plant sumoylation system
JOURNAL OF VIROLOGY, 78(6), 2758–2769.
MeSH headings : Amino Acid Sequence; Base Sequence; Geminiviridae / metabolism; Geminiviridae / pathogenicity; Geminiviridae / physiology; Molecular Sequence Data; Plants, Genetically Modified; Sequence Analysis, DNA; Tobacco / genetics; Tobacco / virology; Two-Hybrid System Techniques; Ubiquitin-Conjugating Enzymes / genetics; Ubiquitin-Conjugating Enzymes / metabolism; Viral Proteins / genetics; Viral Proteins / metabolism; Virus Replication
TL;DR:
Effects on geminivirus replication were observed in transgenic plants with altered levels of SUMO, the substrate for UBC9, and the host cell sumoylation enzyme, NbSCE1 (N. benthamiana SUMO-conjugating enzyme, homolog to Saccharomyces cerevisiae U BC9), was found to interact specifically with RepAC1.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
Growth and localized energy status in phosphorus-stressed soybean
JOURNAL OF PLANT NUTRITION, 27(11), 1875–1890.
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2004 review
VIGS vectors for gene silencing: Many targets, many tools
[Review of ]. ANNUAL REVIEW OF PLANT BIOLOGY, 55, 495–519.
author keywords: RNAi; hpRNA; functional genomics; geminiviruses
MeSH headings : Gene Silencing; Genes, Plant / genetics; Genetic Vectors; Genomics; Plants / genetics; Viruses / genetics
TL;DR:
This review examines how DNA and RNA viruses have been modified to silence plant gene expression and discusses advantages and disadvantages of VIGS in determining gene function and guidelines for the safe use of viral vectors.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
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