Works Published in 2016

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Displaying works 41 - 60 of 110 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2016 chapter

Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry

In Methods in Molecular Biology (pp. 69–86).

By: E. Wear n, L. Concia n, A. Brooks n, E. Markham n, T. Lee n, G. Allen n, W. Thompson n, L. Hanley-Bowdoin n

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: 5-Ethynyl-2 '-deoxyuridine; Flow cytometry; Nuclei sorting; Arabidopsis; Maize; Percoll gradient; Cell cycle; DNA replication; Chromatin
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Cell Cycle; Cell Fractionation / methods; Cell Nucleus / genetics; Click Chemistry / methods; DNA Replication; DNA, Plant / analysis; DNA, Plant / genetics; Deoxyuridine / analogs & derivatives; Deoxyuridine / analysis; Flow Cytometry / methods; Fluorescent Dyes / analysis; Zea mays / cytology; Zea mays / genetics
Sources: ORCID, Crossref
Added: February 14, 2019

2016 dataset

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=77bbe652de0b4439b9a9e89016f99c93

Manuel Kleiner

Source: ORCID
Added: February 3, 2019

2016 dataset

Proteomics of Cycloclasticus endosymbiont of deep-sea mussel Bathymodiolus heckerae from Campeche Knolls, southern Gulf of Mexico

http://www.ebi.ac.uk/pride/archive/projects/PXD005351

Manuel Kleiner

Source: ORCID
Added: February 3, 2019

2016 dataset

Proteomics of Candidatus Thiodiazotropha endoloripes, the chemosynthetic symbiont of the lucinid clam Loripes lucinalis from the Bay of Fetovaia

http://www.ebi.ac.uk/pride/archive/projects/PXD004536

Manuel Kleiner

Source: ORCID
Added: February 3, 2019

2016 journal article

MiL-FISH: Multi-labelled oligonucleotides for fluorescence in situ hybridisation improve visualization of bacterial cells

Applied and Environmental Microbiology, 82(1), 62–70.

By: M. Schimak*, M. Kleiner*, S. Wetzel*, M. Liebeke*, N. Dubilier* & B. Fuchs*

co-author countries: Canada 🇨🇦 Germany 🇩🇪
MeSH headings : Bacteria / cytology; Bacteria / genetics; Flow Cytometry; In Situ Hybridization, Fluorescence / methods; Oligonucleotide Probes / chemistry; Oligonucleotide Probes / genetics; Staining and Labeling
Sources: ORCID, Web Of Science
Added: February 3, 2019

2016 dataset

Differential proteomics of Lenisia limosa (Breviatea) and its epibiotic Arcobacter symbiont

http://www.ebi.ac.uk/pride/archive/projects/PXD003275

Manuel Kleiner

Source: ORCID
Added: February 3, 2019

2016 journal article

Closely coupled evolutionary history of ecto- and endosymbionts from two distantly-related animal phyla

Molecular Ecology, 25(13), 3203–3223.

By: J. Zimmermann*, C. Wentrup*, M. Sadowski*, A. Blazejak*, H. Gruber-Vodicka*, M. Kleiner*, J. Ott*, B. Cronholm* ...

co-author countries: Austria 🇦🇹 Canada 🇨🇦 Germany 🇩🇪 Sweden 🇸🇪
author keywords: cospeciation; gutless oligochaetes; nematodes; Phallodrilinae; Stilbonematinae; Thiosymbion
MeSH headings : Animals; Annelida / microbiology; Biological Evolution; DNA, Bacterial / genetics; Gammaproteobacteria / genetics; Genetic Markers; Nematoda / microbiology; Oceans and Seas; Phylogeny; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019

2016 dataset

Bathymodiolus azoricus host-symbiont proteomics

http://www.ebi.ac.uk/pride/archive/projects/PXD004061

Manuel Kleiner

Source: ORCID
Added: February 3, 2019

2016 journal article

Spontaneous Reversions of an Evolutionary Trait Loss Reveal Regulators of a Small RNA That Controls Multicellular Development in Myxobacteria

Journal of Bacteriology, 198(23), 3142–3151.

By: Y. Yu*, M. Kleiner* & G. Velicer*

co-author countries: Canada 🇨🇦 Switzerland 🇨🇭 United States of America 🇺🇸

Ed(s): C. Mullineaux

MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Biological Evolution; Gene Expression Regulation, Bacterial; Gene Expression Regulation, Developmental; Histidine Kinase / genetics; Histidine Kinase / metabolism; Mutation; Myxococcus xanthus / genetics; Myxococcus xanthus / growth & development; Myxococcus xanthus / metabolism; RNA, Bacterial / genetics; RNA, Bacterial / metabolism
Source: ORCID
Added: February 3, 2019

2016 journal article

Environmental Breviatea harbor mutualistic Arcobacter epibionts

Nature, 534(7606), 254–258.

By: E. Hamann*, H. Gruber-Vodicka*, M. Kleiner*, H. Tegetmeyer*, D. Riedel*, S. Littmann*, J. Chen*, J. Milucka* ...

co-author countries: Canada 🇨🇦 Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : Arcobacter / genetics; Arcobacter / physiology; Eukaryota / enzymology; Eukaryota / genetics; Eukaryota / physiology; Genetic Fitness; Hydrogen / metabolism; Hydrogenase / genetics; Hydrogenase / metabolism; NADP / metabolism; Proteomics; Symbiosis / genetics; Transcriptome; Virulence / genetics; Virulence Factors / genetics; Virulence Factors / metabolism
Sources: ORCID, Web Of Science
Added: February 3, 2019

2016 journal article

Chemosynthetic sulphur-oxidizing symbionts of marine invertebrate animals are capable of nitrogen fixation

Nature Microbiology, 2, 16195.

By: J. Petersen*, A. Kemper*, H. Gruber-Vodicka*, U. Cardini*, M. Geest*, M. Kleiner*, S. Bulgheresi*, M. Mußmann* ...

co-author countries: Austria 🇦🇹 Canada 🇨🇦 Germany 🇩🇪 France 🇫🇷 Netherlands 🇳🇱
MeSH headings : Animals; Aquatic Organisms / microbiology; Bacteria / enzymology; Bacteria / genetics; Bivalvia / microbiology; Chromadorea / microbiology; Gene Expression Profiling; Nitrogen Fixation; Nitrogenase / genetics; Proteome / analysis; Sequence Analysis, DNA; Symbiosis
Sources: ORCID, Web Of Science
Added: February 3, 2019

2016 journal article

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

BMC Genomics, 17(1).

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: RNA-Seq; Annelida; Oligochaeta; Phallodrilinae; PGRP; FREP; SRCR; Respiratory pigment; Carbon monoxide; Immunology; Chemosynthetic symbiosis
MeSH headings : Adaptation, Biological / genetics; Adaptation, Biological / immunology; Amino Acid Sequence; Animals; Biomarkers; Computational Biology / methods; Gene Expression Profiling / methods; High-Throughput Nucleotide Sequencing; Immunity, Innate / genetics; Microbiota; Models, Biological; Oligochaeta / genetics; Oligochaeta / immunology; Oligochaeta / metabolism; Proteome; Proteomics / methods; Receptors, Pattern Recognition / metabolism; Symbiosis / genetics; Symbiosis / immunology; Transcriptome
Source: ORCID
Added: February 3, 2019

2016 journal article

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

The ISME Journal, 11(2), 463–477.

By: R. Ponnudurai*, M. Kleiner*, L. Sayavedra*, J. Petersen*, M. Moche*, A. Otto*, D. Becher*, T. Takeuchi* ...

co-author countries: Canada 🇨🇦 Germany 🇩🇪 Japan 🇯🇵
MeSH headings : Animals; Biosynthetic Pathways; Gammaproteobacteria / physiology; Gills / microbiology; Hydrothermal Vents; Methane / metabolism; Mytilidae / genetics; Mytilidae / microbiology; Oxidation-Reduction; Proteome; Species Specificity; Sulfur / metabolism; Symbiosis
Source: ORCID
Added: February 3, 2019

2016 journal article

Artificial selection reveals high genetic variation in phenology at the trailing edge of a species range

American Naturalist, 187(2), 182–193.

co-author countries: Canada 🇨🇦 United States of America 🇺🇸

Contributors: S. Sheth* & A. Angert*

author keywords: artificial selection; evolutionary potential; flowering time; functional traits; Mimulus; range limits
MeSH headings : Climate Change; Flowers / growth & development; Genetic Variation; Mimulus / genetics; Mimulus / growth & development; Phenotype; Plant Dispersal; Selection, Genetic
Source: ORCID
Added: February 3, 2019

2016 journal article

Alterations of CorTFL1 and CorAP1 expression correlate with major evolutionary shifts of inflorescence architecture in Cornus (Cornaceae) - a proposed model for variation of closed inflorescence forms

New Phytologist, 216(2), 519–535.

co-author countries: China 🇨🇳 United States of America 🇺🇸
author keywords: CorAP1; Cornus; CorTFL1; evolutionary development; gene expression; inflorescence; in situ hybridization; quantitative real-time polymerase chain reaction (qRT-PCR)
MeSH headings : Biological Evolution; Cornaceae / anatomy & histology; Cornaceae / genetics; Cornaceae / growth & development; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; In Situ Hybridization; Inflorescence / anatomy & histology; Inflorescence / genetics; Models, Biological; Models, Genetic; Phylogeny; Plant Proteins / genetics; Plant Proteins / metabolism; Real-Time Polymerase Chain Reaction; Species Specificity
Sources: Web Of Science, ORCID, Crossref
Added: January 31, 2019

2016 chapter

Helwingiaceae

In K. K. (Ed.), The Families and Genera of Vascular Plants: Vol. XIV (pp. 213–216).

By: Q. Xiang n

co-author countries: United States of America 🇺🇸

Ed(s): K.Kubitzki

Sources: NC State University Libraries, ORCID
Added: January 31, 2019

2016 chapter

Aucubaceae

In K. J. W. & V. Bitterich (Eds.), The Families and Genera of Vascular Plants: Vol. XIV (pp. 37–40).

By: Q. Xiang n

co-author countries: United States of America 🇺🇸

Ed(s): K. W. & V. Bitterich

Sources: NC State University Libraries, ORCID
Added: January 31, 2019

2016 journal article

Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish

Protein Science, 8(11), 2076–2088.

By: M. Tucker n, S. MacKenzie n, J. Maciag n, H. Ackerman n, P. Swartz n, J. Yoder n, P. Hamilton n, A. Clark*

co-author countries: United States of America 🇺🇸

Contributors: M. Tucker n, S. MacKenzie n, J. Maciag n, H. Dirscherl Ackerman, P. Swartz n, J. Yoder n, P. Hamilton n, A. Clay Clark*

author keywords: phage display substrate library; substrate recognition; Danio rerio; apoptosis
MeSH headings : Allosteric Regulation; Animals; Caspase 3 / chemistry; Crystallography, X-Ray; Molecular Dynamics Simulation; Peptide Library; Substrate Specificity; Zebrafish
Source: ORCID
Added: January 31, 2019

2016 journal article

SEUSS integrates gibberellin signaling with transcriptional inputs from the SHR-SCR-SCL3 module to regulate middle cortex formation in the Arabidopsis root.

Plant Physiology. http://europepmc.org/abstract/med/26818732

By: X. Gong, M. Flores-Vergara, J. Hong, H. Chu, J. Lim, R. Franks, Z. Liu, J. Xu

Source: ORCID
Added: January 22, 2019

2016 journal article

Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering.

http://europepmc.org/abstract/med/26825444

By: X. Liu, J. Zhang, A. Abuahmad, R. Franks, D. Xie, Q. Xiang, Planta

Source: ORCID
Added: January 22, 2019

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