Works Published in 2017
Displaying works 41 - 60 of 121 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2017 journal article
Hydrocotyle bowlesioides (Araliaceae): New to the Flora of North Carolina
Castanea, 82(1), 47–47.
Source: Crossref
Added: July 28, 2019
2017 journal article
The proteome of higher plant mitochondria
Mitochondrion, 33, 22–37.
Contributors: R. Rao *, F. Salvato* , B. Thal*, H. Eubel *, J. Thelen * & I. Møller *
author keywords: (Plant) mitochondria; Proteomics; Localization prediction programs
MeSH headings : Computational Biology; Mass Spectrometry; Mitochondria / chemistry; Plant Proteins / analysis; Plants / chemistry; Proteome / analysis; Proteomics
TL;DR:
The proteomic studies have improved the understanding of basic mitochondrial functions, led to the discovery of new mitochondrial metabolic pathways and are helping us towards appreciating the dynamic role of the mitochondria in the responses of the plant cell to biotic and abiotic stress.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy
(OpenAlex)
Source: ORCID
Added: June 21, 2019
2017 article
Proteomics for Bioenergy Production
Salvato, F., Santos, B. M., Santana Costa, M. G., & Rodriguez, E. A. G. (Eds.). (2017, June 11). Plant-Based Genetic Tools for Biofuels Production, pp. 103–121.
Ed(s): F. Salvato* , B. Santos, M. Santana Costa & E. Rodriguez
Source: ORCID
Added: June 21, 2019
2017 journal article
Luxurious Nitrogen Fertilization of Two Sugar Cane Genotypes Contrasting for Lignin Composition Causes Changes in the Stem Proteome Related to Carbon, Nitrogen, and Oxidant Metabolism but Does Not Alter Lignin Content
Journal of Proteome Research, 16(10), 3688–3703.
author keywords: Saccharum officinarum; cell wall; lignocellulosic ethanol; lignin; proteomics
MeSH headings : Biofuels; Biomass; Carbohydrates / chemistry; Carbohydrates / genetics; Fermentation; Gene Expression Regulation, Plant; Genotype; Lignin / chemistry; Lignin / metabolism; Nitrogen / chemistry; Nitrogen / metabolism; Oxidants / chemistry; Oxidants / metabolism; Phenotype; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Proteome / chemistry; Proteome / genetics; Saccharum / genetics; Saccharum / metabolism
TL;DR:
A large-scale proteomics approach based on GeLC-MS/MS was employed to identify and relatively quantify proteins differently accumulated in two contrasting genotypes for lignin composition after excessive nitrogen fertilization, finding that carbon metabolism, amino acid metabolism, protein turnover, and oxidative stress were affected.
(via Semantic Scholar)
Source: ORCID
Added: June 21, 2019
2017 journal article
Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis
Journal of Proteomics, 165, 51–60.
author keywords: Type one phosphatase; Phosphatase inhibitor; Comparative proteomics; Ribosome biogenesis; Protein-protein interaction
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / analysis; Arabidopsis Proteins / antagonists & inhibitors; Gene Expression Regulation, Plant; Gene Knockdown Techniques; Phosphoprotein Phosphatases / antagonists & inhibitors; Protein Interaction Maps; Proteins / genetics; Proteins / physiology; Proteomics / methods
TL;DR:
The complex, reduced growth phenotype supports the notion that AtPPI-2 is a global regulator of TOPPs, and possibly other proteins, and the proposed protein interaction network comprises a testable model underlying changes in protein abundance in the AtPPi-2 mutant, and provides a better framework for future studies.
(via Semantic Scholar)
Source: ORCID
Added: June 21, 2019
2017 chapter
Measuring Protein Movement, Oligomerization State, and Protein–Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy (Scanning FCS)
In W. Busch (Ed.), Plant Genomics (pp. 251–266).
Ed(s): W. Busch
author keywords: Scanning fluorescence correlation spectroscopy; Diffusion coefficient; Protein movement; Oligomerization state; Protein stoichiometry
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plant Roots / metabolism; Spectrometry, Fluorescence / methods
TL;DR:
The scanning FCS techniques of raster image correlation spectroscopy and pair correlation function (pCF) and number and brightness (N&B) and cross-correlation analyses can be used to determine oligomerization state and binding ratios of protein complexes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: February 8, 2019
2017 chapter
Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach
In K. Kaufmann & B. Mueller-Roeber (Eds.), Plant Gene Regulatory Networks (pp. 331–348).
Ed(s): K. Kaufmann & B. Mueller-Roeber
author keywords: Gene regulatory network; Dynamic Bayesian network; Ordinary differential equation; Arabidopsis root
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology / methods; Databases, Genetic; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Plant Roots / genetics; Reproducibility of Results
TL;DR:
The basic steps to implement a simple but computationally efficient algorithm to infer GRNs based on dynamic Bayesian networks (DBNs) are shown, and how to approximate DBN-based GRN models with continuous models is explained.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: February 8, 2019
2017 journal article
Normalization of metatranscriptomic and metaproteomic data for differential gene expression analyses: The importance of accounting for organism abundance
PeerJ Preprints, 5, e2846v1.
peerj.com (publisher PDF)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: NC State University Libraries, ORCID
Added: February 7, 2019
2017 dataset
Re-analysis of an ultra-deep and quantitative saliva proteome
http://www.ebi.ac.uk/pride/archive/projects/PXD006366
Source: ORCID
Added: February 3, 2019
2017 dataset
Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics
http://www.ebi.ac.uk/pride/archive/projects/PXD006118
Source: ORCID
Added: February 3, 2019
2017 dataset
Metaproteomics of phototrophic biomats from two soda lakes in the Canadian Rocky Mountains
http://www.ebi.ac.uk/pride/archive/projects/PXD006343
Source: ORCID
Added: February 3, 2019
2017 journal article
Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.
Standards in Genomic Sciences.
author keywords: Uncultured endosymbiont; Hydrothermal vents; Marine invertebrate symbiosis; Thiotrophy; Autotrophy
TL;DR:
The first draft genome sequence of the sulfur-oxidizing symbiont of B. thermophilus is reported, which revealed pathways for the use of sulfide and thiosulfate as energy sources and encodes the Calvin-Benson-Bassham cycle for CO2 fixation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Source: ORCID
Added: February 3, 2019
2017 journal article
Short-chain alkanes fuel mussels and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps
Nature Microbiology, 2, 17093.
MeSH headings : Alkanes / metabolism; Animals; Bivalvia / microbiology; Carbon / metabolism; Energy Metabolism; Gene Expression Profiling; Genomics; Gulf of Mexico; Piscirickettsiaceae / genetics; Piscirickettsiaceae / metabolism; Piscirickettsiaceae / physiology; Porifera / microbiology; Symbiosis
TL;DR:
The results indicate that the metabolic versatility of bacteria within the Cycloclasticus clade is higher than previously assumed, and highlight the expanded role of these keystone species in the degradation of marine hydrocarbons.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
Sources: ORCID, Web Of Science
Added: February 3, 2019
2017 article
Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp
Dong, X., Kleiner, M., Sharp, C. E., Thorson, E., Li, C., Liu, D., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
Source: ORCID
Added: February 3, 2019
2017 article
Assessing species biomass contributions in microbial communities via metaproteomics
Kleiner, M., Thorson, E., Sharp, C. E., Dong, X., Liu, D., Li, C., & Strous, M. (2017, April). (Vol. 4). Vol. 4.
Source: ORCID
Added: February 3, 2019
2017 journal article
Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp
Frontiers in Microbiology, 8.
author keywords: metagenomics; amplicon sequencing; bioinformatics; microbial ecology; microbiome
TL;DR:
The MetaAmp pipeline for processing of SSU rRNA gene and other non-coding or protein-c coding amplicon sequencing data by investigators that are inexperienced with bioinformatics procedures is presented.
(via Semantic Scholar)
Source: ORCID
Added: February 3, 2019
2017 article
Demographic compensation does not rescue populations at a trailing range edge
Sheth, S. N., & Angert, A. L. (2017, March 17). Proceedings of the National Academy of Sciences of the United States of America, Vol. 3, pp. 2413–2418.
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Source: ORCID
Added: February 3, 2019
2017 journal article
An Internship May Not Be Enough: Enhancing Bioscience Industry Job Readiness through Practicum Experiences.
Journal of Microbiology & Biology Education, 18(1).
UN Sustainable Development Goal Categories
4. Quality Education
(Web of Science)
Source: ORCID
Added: January 31, 2019
2017 journal article
Modifications to a LATE MERISTEM IDENTITY gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)
Proceedings of the National Academy of Sciences of the United States of America, 114(1), E57–E66.
Contributors: R. Andres n, V. Coneva *, M. Frank *, J. Tuttle n, L. Samayoa n, S. Han n, B. Kaur n, L. Zhu n
author keywords: cotton; leaf shape; okra; gene cloning
MeSH headings : Amino Acid Sequence / genetics; Frameshift Mutation / genetics; Gene Expression Regulation, Plant; Genes, Plant / genetics; Gossypium / genetics; Gossypium / physiology; Plant Leaves / genetics; Plant Leaves / physiology; Promoter Regions, Genetic / genetics; Transcription Factors / genetics
TL;DR:
The results indicate that subokra is the ancestral leaf shape of tetraploid cotton that gave rise to the okra allele and that normal is a derived mutant allele that came to predominate and define the leafshape of cultivated cotton.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science; OpenAlex)
Source: ORCID
Added: January 30, 2019
2017 journal article
Assessing, water-related plant traits to explain slow-wilting in soybean PI 471938
JOURNAL OF CROP IMPROVEMENT, 31(3), 400–417.
author keywords: Drought tolerance; elastic modulus; hydraulic conductance; osmotic potential; soybean; transpiration
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: December 17, 2018
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