Works Published in 2019
Displaying works 41 - 60 of 91 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2019 journal article
Relating nitrogen concentration and light intensity to the growth and lipid accumulation of Dunaliella viridis in a photobioreactor
Journal of Applied Phycology, 31(6), 3397–3409.
Contributors: Y. Lai n, A. Karam n, H. Sederoff n , J. Ducoste n & F. Reyes n
author keywords: Dunaliella viridis; Chlorophyta; Lipid; Light; Nitrogen; Photobioreactor
TL;DR:
The data show that D. viridis accumulates cellular carbohydrates as a primary carbon and energy storage product and then converts the cellular carbohydrates into cellular lipids as a secondary storage product when nitrogen is depleted, suggesting the possible use of real-time light data as a method for in situ quantification of biomass concentration and chlorophyll a concentration.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
14. Life Below Water
(OpenAlex)
Source: ORCID
Added: October 30, 2019
2019 journal article
Plastid phylogenomics and biogeographic analysis support a trans-Tethyan origin and rapid early radiation of Cornales in the Mid-Cretaceous
Molecular Phylogenetics and Evolution, 140, 106601.
author keywords: Biogeography; Character coding; Cornales; Plastid genome; Phylogenomics
MeSH headings : Base Composition / genetics; Calibration; Codon / genetics; Fossils; Genetic Variation; Genome, Plastid; Magnoliopsida / genetics; Phylogeny; Phylogeography; Plastids / genetics; Time Factors
TL;DR:
The phylogenomic analysis of Cornales demonstrated the value of plastid genome in phylogennomic study, but posed an old challenge of biogeographic study with fossil data and raised caution for the synonymous substitution sites of plasts genome in phylogenomic studies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: October 28, 2019
2019 review
Changing perspectives on terrestrial nitrogen cycling: The importance of weathering and evolved resource-use traits for understanding ecosystem responses to global change
[Review of ]. FUNCTIONAL ECOLOGY, 33(10), 1818–1829.
author keywords: carbon storage; eco-evolutionary feedbacks; ecosystem processes; global change; nitrogen deposition; resource-use traits; rock nitrogen weathering
TL;DR:
An eco‐evolutionary framework and revised knowledge of N cycling is described, describing how rock N weathering could have contributed more strongly to gradients in soil N availability than previously recognized and a way forward for improving biogeochemical models to more accurately estimate rates of plant production and decomposition, and total soil N.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: October 21, 2019
2019 journal article
Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana
MOLECULAR CELL, 76(1), 177-+.
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; Cytoplasm / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / pharmacology; Intrinsically Disordered Proteins / chemistry; Intrinsically Disordered Proteins / genetics; Intrinsically Disordered Proteins / metabolism; Plant Growth Regulators / pharmacology; Protein Binding; Protein Folding; Protein Interaction Domains and Motifs; Structure-Activity Relationship; Transcription Factors / chemistry; Transcription Factors / genetics; Transcription Factors / metabolism
TL;DR:
The data suggest a model in which ARF nucleo-cytoplasmic partitioning regulates auxin responsiveness, providing a mechanism for cellular competence for auxin signaling.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: October 21, 2019
2019 journal article
Natural selection and repeated patterns of molecular evolution following allopatric divergence
ELife, 8.
MeSH headings : Evolution, Molecular; Asia, Eastern; Genes, Plant; Genetic Speciation; Genetic Variation; North America; Plant Leaves / genetics; Plants / classification; Plants / genetics; Selection, Genetic
TL;DR:
This work examines genome-wide divergence of putatively single-copy orthologous genes (POGs) in 20 allopatric species/variety pairs from diverse angiosperm clades, with 16 pairs reflecting the classic eastern Asia-eastern North America floristic disjunction.
(via Semantic Scholar)
doi.org (publisher)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, Crossref
Added: October 14, 2019
2019 journal article
A shared core microbiome in soda lakes separated by large distances
NATURE COMMUNICATIONS, 10.
TL;DR:
The authors report amplicon, metagenome, and proteome sequencing from microbial mat communities of four alkaline lakes in Canada, and compare these lakes to central Asian soda lakes, revealing a shared core microbiome despite the geographical distance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: October 7, 2019
2019 journal article
Epigenetic silencing of a multifunctional plant stress regulator
ELIFE, 8.
MeSH headings : Arabidopsis / physiology; Arabidopsis Proteins / biosynthesis; Arabidopsis Proteins / metabolism; Epigenesis, Genetic; Ethylenes / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Receptors, Cell Surface / biosynthesis; Signal Transduction; Transcription Factors / metabolism
TL;DR:
A chromatin-dependent regulatory mechanism at EIN2 requiring two genes is identified, which safeguards the expression of an essential multifunctional plant stress regulator.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID
Added: September 30, 2019
2019 review
Keep talking: crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation
[Review of ]. JOURNAL OF EXPERIMENTAL BOTANY, 70(16), 4197–4210.
Contributors: D. Mendoza-Cózatl *, A. Gokul *, M. Carelse *, T. Jobe *, T. Long n , M. Keyster *, S. Kopriva
author keywords: Dynamic cell economy; iron sensing; iron use efficiency; nutrient crosstalk; sulfur homeostasis
MeSH headings : Growth and Development; Iron / metabolism; Minerals / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plants / genetics; Plants / metabolism; Sulfur / metabolism
TL;DR:
This review summarizes and discusses recent literature on Fe sensing, allocation, use efficiency, and when pertinent, its relation to S metabolism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: Web Of Science, ORCID
Added: September 30, 2019
2019 journal article
A polyketide synthase gene cluster associated with the sexual reproductive cycle of the banana pathogen, Pseudocercospora fijiensis
PLOS ONE, 14(7), e0220319.
Ed(s): O. Lespinet
MeSH headings : Ascomycota / enzymology; Ascomycota / genetics; Ascomycota / pathogenicity; Ascomycota / physiology; Fungal Proteins / genetics; Multigene Family; Musa / microbiology; Neurospora crassa / enzymology; Neurospora crassa / genetics; Phylogeny; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / microbiology; Polyketide Synthases / genetics; Reproduction / genetics; Sequence Homology; Sordariales / enzymology; Sordariales / genetics
TL;DR:
This is the first report of a polyketide synthase pathway associated with spermagonia associated with P. fijiensis, and it is shown that PKS8-4 is more similar than Hybrid8-3 to PKS4.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: September 30, 2019
2019 journal article
Can the Environment have a Genetic Basis? A Case Study of Seedling Establishment in Arabidopsis thaliana
JOURNAL OF HEREDITY, 110(4), 467–478.
author keywords: germination; habitat selection; habitat tracking; phenology; seed dormancy
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Ecosystem; Environment; Gene-Environment Interaction; Genetic Fitness; Genotype; Germination / genetics; Life Cycle Stages; Phenotype; Plant Development / genetics; Plant Dormancy / genetics; Quantitative Trait Loci; Quantitative Trait, Heritable; Seedlings / genetics
TL;DR:
The results suggest that environmentally-cued development may be a widespread mechanism by which genotypes can differ in the environment they experience, introducing the possibility that the environment itself can be inherited and can evolve.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: September 30, 2019
2019 journal article
Cellular localization of tolyporphins, unusual tetrapyrroles, in a microbial photosynthetic community determined using hyperspectral confocal fluorescence microscopy
Photosynthesis Research, 141(3), 259–271.
author keywords: Bacteriochlorin; Chlorophyll; Cyanobacteria; Membrane; Multivariate curve resolution
MeSH headings : Adaptation, Physiological; Bacteriochlorophyll A / chemistry; Chlorophyll A / chemistry; Cyanobacteria / metabolism; Cyanobacteria / ultrastructure; Darkness; Microscopy, Confocal; Microscopy, Fluorescence; Photosynthesis; Porphyrins / chemistry; Porphyrins / metabolism; Tetrapyrroles / chemistry; Tetrapyrroles / metabolism
TL;DR:
This work quantifies the relative abundance and envelope localization of tolyporphins in single cells, and illustrates the ability to identify novel tetrapyrroles in the presence of chlorophyll a in a photosynthetic microorganism within a non-axenic culture.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: September 23, 2019
2019 journal article
The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis
Proceedings of the National Academy of Sciences, 116(35), 17563–17571.
author keywords: gene imprinting; active DNA demethylation; endosperm development; epigenetic reprogramming; Arabidopsis thaliana
MeSH headings : Arabidopsis / classification; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Catalytic Domain; DNA Demethylation; Epigenesis, Genetic; Evolution, Molecular; Gene Expression Regulation, Plant; Heterochromatin / genetics; Heterochromatin / metabolism; Models, Molecular; N-Glycosyl Hydrolases / chemistry; N-Glycosyl Hydrolases / metabolism; Protein Binding; Protein Interaction Domains and Motifs; Trans-Activators / chemistry; Trans-Activators / metabolism
TL;DR:
A bipartite model for DME protein action is proposed and it is suggested that the DME N terminus was acquired late during land plant evolution to improve specificity and facilitate demethylation at heterochromatin targets.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Crossref
Added: September 13, 2019
2019 journal article
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2
NATURE MICROBIOLOGY, 4(9), 1465–1474.
MeSH headings : Animals; Bacteria / classification; Bacteria / genetics; Bacteria / metabolism; Biosynthetic Pathways; Endoplasmic Reticulum, Rough / microbiology; Genome, Bacterial / genetics; Microbiota / genetics; Phylogeny; Placozoa / cytology; Placozoa / microbiology; Species Specificity; Symbiosis; Vacuoles / microbiology; Water Microbiology
TL;DR:
This study shows that one of the simplest animals has evolved highly specific and intimate associations with symbiotic, intracellular bacteria and highlights that symbioses can provide access to otherwise elusive microbial dark matter.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: September 9, 2019
2019 journal article
Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
MSYSTEMS, 4(3).
author keywords: LC-MS; metagenomics; metaproteomics; metatranscriptomics; microbiome; microbiota; proteomics; symbiosis
TL;DR:
A brief overview of the questions that can be addressed, as well as new metaproteomics-based approaches that are developing to address even more questions in the study of microbial communities and plant and animal microbiota are provided.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: September 9, 2019
2019 journal article
Additive genetic variance for lifetime fitness and the capacity for adaptation in an annual plant
Evolution, 73(9), 1746–1758.
author keywords: Adaptive capacity; aster models; Chamaecrista fasciculata; Fisher's Fundamental Theorem of Natural Selection; genotype-by-environment interactions
MeSH headings : Adaptation, Physiological / genetics; Biological Evolution; Chamaecrista / genetics; Genetic Fitness; Genetic Variation; Genetics, Population; Genotype; Geography; Models, Genetic; Pedigree; Seasons; Seeds; Selection, Genetic; Time Factors
TL;DR:
This study estimated VA(W) and in three pedigreed populations of annual Chamaecrista fasciculata, over three years in the wild, and presented an experimental approach for studies of adaptive capacity in theWild.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: August 21, 2019
2019 article
From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration
Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.
MeSH headings : Ethylenes / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / metabolism; Models, Biological; Plant Proteins / metabolism; Plant Roots / metabolism; Signal Transduction
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: July 29, 2019
2019 journal article
Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation
MBIO, 10(3).
Ed(s): S. Giovannoni
author keywords: gammaproteobacteria; chemosynthesis; ectosymbiont; lithoheterotrophy; meiofauna; protist
MeSH headings : Aquatic Organisms / microbiology; Autotrophic Processes; Bacteria / genetics; Bacteria / metabolism; Carbon Cycle / genetics; Carbon Dioxide / metabolism; Ciliophora / microbiology; Gene Expression Profiling; Genomics; Italy; Oxidation-Reduction; RNA, Ribosomal, 16S / genetics; Sulfur / metabolism; Symbiosis
TL;DR:
It is shown that Kentron bacteria are the only thiotrophic symbionts that appear to be entirely heterotrophic, unlike all other thiotroph symbiont studied to date, which possess either the Calvin-Benson-Bassham or the reverse tricarboxylic acid cycle for autotrophy.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: July 22, 2019
2019 journal article
Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery
Biotechnology for Biofuels, 12(1).
author keywords: Cellulose; Lignin; Recalcitrance; Catalysis; Delignification; Poplar
TL;DR:
Genetic modification of lignin composition can enhance the portfolio of aromatic products obtained from lignocellulosic biomass while promoting disassembly into biofuel and bioproduct substrates and inform a ‘no carbon left behind’ strategy to convert total woody biomass into lign in, cellulose, and hemicellulose value streams for the future biorefinery.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: July 15, 2019
2019 article
RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data
Perkins, P., Mazzoni-Putman, S., Stepanova, A., Alonso, J., & Heber, S. (2019, June 6). BMC GENOMICS, Vol. 20.
author keywords: Ribo-seq; Next-generation sequencing; Data analysis; Web application
MeSH headings : Computer Graphics; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Humans; Protein Biosynthesis; Quality Control; RNA, Messenger / genetics; RNA, Messenger / metabolism; Ribosomes / metabolism; Sequence Analysis, RNA; Software; Transcriptome; Web Browser
TL;DR:
RiboStreamR is presented, a comprehensive Ribo-seq quality control (QC) platform in the form of an R Shiny web application that provides visualization and analysis tools for various Ribe-seq QC metrics, including read length distribution, read periodicity, and translational efficiency.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: July 1, 2019
2019 journal article
Rice OsPEX1, an extensin-like protein, affects lignin biosynthesis and plant growth
Plant Molecular Biology, 100(1-2), 151–161.
author keywords: Rice; Semi-dwarf; Lignin; Lodging resistance; Leucine-rich repeat extensin-like protein; OsPEX1
MeSH headings : Base Sequence; Gene Expression Regulation, Plant; Genes, Plant; Glycoproteins / genetics; Glycoproteins / metabolism; Lignin / biosynthesis; Mutation / genetics; Oryza / genetics; Oryza / metabolism; Oryza / physiology; Phenotype; Plant Development; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Stems / metabolism; Plants, Genetically Modified
TL;DR:
The identification and characterization of a rice semi-dominant dwarf mutant (pex1) with stiff culm is reported and it is demonstrated that modulating OsPEX1 expression could provide a tool for improving rice lodging resistance.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: June 4, 2019
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