Works Published in 2009
Displaying works 61 - 80 of 80 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2009 journal article
Species Diversity and Composition in Old Growth and Second Growth Rich Coves of the Southern Appalachian Mountains
CASTANEA, 74(1), 27–38.
www.bioone.org (repository)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Proteomics of Pyrococcus furiosus, a Hyperthermophilic Archaeon Refractory to Traditional Methods
JOURNAL OF PROTEOME RESEARCH, 8(8), 3844–3851.
author keywords: Pyrococcus furiosus; shotgun proteomics; archaea; hyperthermophile; high throughput; IPG-IEF; LC-MS/MS; archaeal proteins; microwave assisted acid hydrolysis
MeSH headings : Archaeal Proteins / analysis; Archaeal Proteins / metabolism; Hydrogen-Ion Concentration; Hydrolysis; Isoelectric Point; Microwaves; Peptide Fragments / analysis; Peptide Fragments / metabolism; Peptide Mapping; Protein Conformation; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Pyrococcus furiosus / chemistry; Trypsin / metabolism
TL;DR:
A simple shotgun proteomics approach for the global identification of the P. furiosus proteome using a detergent-based microwave assisted acid hydrolysis step coupled with an overnight trypsin digest to obtain peptides is developed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Influence of process parameters on growth of Clostridium ljungdahlii and Clostridium autoethanogenum on synthesis gas
ENZYME AND MICROBIAL TECHNOLOGY, 44(5), 281–288.
author keywords: Clostridium ljungdahlii; Clostridium autoethanaogenum; Synthesis gas fermentation; Ethanol; Acetate
TL;DR:
Higher flow rates resulted in greater end product formation with no significant effect on product ratios in C. autoethanogenum fermentations, and the ethanol to acetate ratios were smaller at lower pH levels and higher flow rates.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Differences in growth patterns between co-occurring forest and savanna trees affect the forest-savanna boundary
FUNCTIONAL ECOLOGY, 23(4), 689–698.
author keywords: cerrado; ecosystem dynamics; forest-savanna boundaries; leaf phenology; photosynthesis; specific leaf area
TL;DR:
Comparisons of patterns of leaf phenology, stem radial growth and branch growth of co-occurring savanna and forest trees in the Cerrado region of central Brazil suggest that forest trees that invade the savanna tend to present higher growth rates and larger and denser crowns, which enhance shading and could promote changes in equilibrium of forest–savanna boundaries.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Isotopic Fractionation of Methyl tert-Butyl Ether Suggests Different Initial Reaction Mechanisms during Aerobic Biodegradation
Environmental Science & Technology, 43(8), 2793–2799.
MeSH headings : Aerobiosis; Bacteria, Aerobic / metabolism; Methyl Ethers / metabolism
TL;DR:
Significantly, delta13C measurements of the tert-butyl alcohol and tert-amyl alcohol products indicated that the secondary metabolites of these groups do not participate in the reaction and confirmed that ether biodegradation by strain K1 involves oxidation of the methoxy (or ethoxy) group.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Systems genetics of complex traits in Drosophila melanogaster
NATURE GENETICS, 41(3), 299–307.
MeSH headings : Amino Acid Sequence; Animals; Animals, Inbred Strains; Base Sequence; Chromosome Mapping; Drosophila melanogaster / genetics; Female; Gene Regulatory Networks / physiology; Genetic Variation / physiology; Genetics, Population / methods; Male; Molecular Sequence Data; Phenotype; Quantitative Trait, Heritable; RNA, Messenger / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; Sequence Homology, Amino Acid; Tissue Distribution
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Shoot regeneration of dwarf dogwood (Cornus canadensis L.) and morphological characterization of the regenerated plants
PLANT CELL TISSUE AND ORGAN CULTURE, 97(1), 27–37.
author keywords: Cornus canadensis; Organogenesis; Regeneration; Rhizomes; Tissue culture
TL;DR:
An efficient regeneration system is reported for a dwarf dogwood species C. canadensis through organogenesis from rejuvenated leaves, which facilitates developing a genetic transformation system to test candidate genes involved in the developmental divergence of inflorescences in Cornus.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1
EXTREMOPHILES, 13(2), 299–311.
author keywords: Iron-containing alcohol dehydrogenase; Heterologous expression; Hyperthermophile; Archaea; Thermococcus
MeSH headings : Alcohol Dehydrogenase / chemistry; Amino Acid Sequence; Archaea; Cloning, Molecular; Hydrogen-Ion Concentration; Iron / chemistry; Kinetics; Molecular Sequence Data; NADP / metabolism; Protein Structure, Tertiary; Recombinant Proteins / chemistry; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Temperature; Thermococcus / metabolism
TL;DR:
The gene encoding a thermostable iron-containing alcohol dehydrogenase from Thermococcus Strain ES1 was cloned, sequenced and expressed in Escherichia coli and it was concluded that the gene encoding ES1 ADH was expressed successfully in E. coli.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells
BIOPROCESS AND BIOSYSTEMS ENGINEERING, 32(3), 369–380.
author keywords: Clostridium ljungdahlii; Clostridium autoethanaogenum; Ethanol; Acetate; Resting cells; Non-growing cells
MeSH headings : Acetates / metabolism; Cell Culture Techniques / methods; Clostridium / chemistry; Clostridium / classification; Clostridium / growth & development; Clostridium / metabolism; Ethanol / metabolism; Hydrogen-Ion Concentration; Nitrogen / metabolism; Species Specificity
TL;DR:
Clostridium autoethanogenum cultures were not induced into true resting states but did show improvement in total ethanol production as well as increased shifts in ethanol-to-acetate production ratios, and resting cell states were induced in autotrophic Clostridia ljungdahlii cultures.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep
NATURE GENETICS, 41(3), 371–375.
MeSH headings : Animals; Animals, Genetically Modified; Animals, Inbred Strains; Drosophila / genetics; Drosophila Proteins / genetics; Female; Gene Expression Regulation / physiology; Gene Regulatory Networks / physiology; Genes, Insect; Genetic Variation / physiology; Genome, Insect; Genome-Wide Association Study / veterinary; Male; Models, Biological; Molecular Sequence Data; Polymorphism, Genetic; Sleep / genetics
TL;DR:
It is independently confirmed that molecular polymorphisms in Catsup (Catecholamines up) are associated with variation in sleep and that P-element mutations in four candidate genes affect sleep and gene expression and co-regulated gene expression using P- element mutants are confirmed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
The ABC transporter ATR1 is necessary for efflux of the toxin cercosporin in the fungus Cercospora nicotianae
FUNGAL GENETICS AND BIOLOGY, 46(2), 146–158.
author keywords: ABC transporter; Cercospora nicotianae; Cercosporin; Efflux pump; MFS transporter; Polyketide; Cercosporin production; Cercosporin resistance
MeSH headings : ATP-Binding Cassette Transporters / genetics; ATP-Binding Cassette Transporters / metabolism; Ascomycota / genetics; Ascomycota / metabolism; Biological Transport; Cloning, Molecular; Drug Resistance, Fungal; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Regulation, Fungal; Molecular Sequence Data; Mutation; Mycotoxins / metabolism; Open Reading Frames; Perylene / analogs & derivatives; Perylene / metabolism
TL;DR:
The results together indicate ATR1 acts as a cercosporin efflux pump in this fungus and plays a partial role in resistance and moderately enhanced toxin resistance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Phylogeny, origin, and biogeographic history of Aesculus L. (Sapindales) - an update from combined analysis of DNA sequences, morphology, and fossils
TAXON, 58(1), 108–126.
author keywords: Aesculus; biogeography; Divergence time dating; Hippocastanaceae; Laurasia; phylogeny; Sapindaceae; Sapindales
TL;DR:
The results support that Aesculus originated as an element of the Paleogene mesophilic flora in the Beringian region with multiple eastward migrations characterizing the early spatial history of this genus, and supports Trans-Beringian migration of plants in the very early Paleogene.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Crossref, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
Phylogeny of Abies (Pinaceae) inferred from nrITS sequence data
Taxon, 58(1), 141–152.
Source: NC State University Libraries
Added: August 6, 2018
2009 journal article
Phosphatidylinositol (4,5)Bisphosphate Inhibits K+-Efflux Channel Activity in NT1 Tobacco Cultured Cells
PLANT PHYSIOLOGY, 149(2), 1127–1140.
MeSH headings : Abscisic Acid / pharmacology; Calcium / pharmacology; Calcium / physiology; Cells, Cultured; Drosophila Proteins / drug effects; Drosophila Proteins / physiology; Kinetics; Phosphatidylinositol 4,5-Diphosphate / metabolism; Phosphatidylinositol 4,5-Diphosphate / pharmacology; Potassium / physiology; Potassium Channel Blockers / pharmacology; Potassium Channels / drug effects; Potassium Channels / physiology; Potassium Channels, Tandem Pore Domain / antagonists & inhibitors; Potassium Channels, Tandem Pore Domain / physiology; Tobacco / cytology; Tobacco / drug effects; Tobacco / physiology
TL;DR:
Short-term manipulations decreasing PtdInsP2 levels in the High PIs, such as pretreatment with the phytohormone abscisic acid or neutralizing the bath solution from pH 5.6 to pH 7, increased IK (i.e. Ntork activity), consistent with NtORK inhibition by the negatively charged PtdinsP2 in the internal plasma membrane leaflet.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Effect of microbial pretreatment on enzymatic hydrolysis and fermentation of cotton stalks for ethanol production
BIOMASS & BIOENERGY, 33(1), 88–96.
author keywords: Gossypium hirsutum L; Pretreatment; Phanerochaete chrysosporium; Lignin; Fuel ethanol; Cellobiose; Submerged cultivation; Solid state cultivation
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy
(Web of Science)
12. Responsible Consumption and Production
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
X-ray structure of ILL2, an auxin-conjugate amidohydrolase from Arabidopsis thaliana
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 74(1), 61–71.
author keywords: M20D peptidase family; auxin homeostasis; metalloenzyme; X-ray structure
MeSH headings : Amidohydrolases / chemistry; Animals; Arabidopsis / enzymology; Arabidopsis Proteins / chemistry; Bacterial Proteins / chemistry; Binding Sites; Crystallography, X-Ray; Exopeptidases / chemistry; Indoleacetic Acids / chemistry; Metalloproteases / chemistry; Models, Chemical; Protein Structure, Quaternary; Substrate Specificity
TL;DR:
The structure of ILL2 suggests that this enzyme likely uses a catalytic mechanism that follows the paradigm established for the other enzymes of the M20 peptidase family, and a hydrophobic pocket nearby the catalytic dimetal center likely recognizes the indolyl moiety of the substrate.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Invasion of a West Everglades wetland by Melaleuca quinquenervia countered by classical biological control
BIOLOGICAL CONTROL, 48(1), 73–78.
author keywords: Weed biological control; Melaleuca; Florida Everglades; Community level impacts
TL;DR:
This is the first study with controls that quantifies the population level regulation ofmelaleuca by introduced biological control agents and corroborates other correlative studies that documented significant changes in melaleuca communities after the introduction and establishment of biological controlagents.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Genetic analyses of the federally endangered Echinacea laevigata using amplified fragment length polymorphisms (AFLP)—Inferences in population genetic structure and mating system
Conservation Genetics, 10(1), 1–14.
author keywords: Echinacea laevigata; Genetic structure; Outcrossing rate; AFLP
TL;DR:
Results are encouraging for conservation, signifying that populations may persist due to continued genetic exchange sustained by the outcrossing mating system of the species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
LEAVES OF CORNUS (CORNACEAE) FROM THE PALEOCENE OF NORTH AMERICA AND ASIA CONFIRMED BY TRICHOME CHARACTERS
INTERNATIONAL JOURNAL OF PLANT SCIENCES, 170(1), 132–142.
author keywords: Cornus; fossil; leaves; trichomes; North America; Greenland; Europe; Russia; Paleocene
TL;DR:
Reexamination of previously described Cornus leaves from the Paleocene of the Rocky Mountains and Great Plains region leads us to reject Cornus nebrascensis Schimper (=Cornus newberryi Hollick) from the genus, and recognizes two new Paleocene species, whose identity as Cornus is confirmed by the presence of characteristic trichomes and venation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Simultaneous excision of two transgene flanking sequences and resolution of complex integration loci
PLANT MOLECULAR BIOLOGY, 69(1-2), 23–32.
author keywords: Site specific recombination; Sequence excision; Complex transgene locus resolution; Transgene expression; Plant transformation
MeSH headings : Electrophoresis, Polyacrylamide Gel; Escherichia coli / genetics; Genetic Vectors; Plants, Genetically Modified; Recombination, Genetic; Transgenes
TL;DR:
It is shown that a single SSR reaction can simultaneously carry out double excisions and resolve complex transgene loci at high frequency.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
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