Works Published in 2016

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Displaying works 61 - 80 of 110 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2016 journal article

Wortmannin-induced vacuole fusion enhances amyloplast dynamics in Arabidopsis zigzag1 hypocotyls

JOURNAL OF EXPERIMENTAL BOTANY, 67(22), 6459–6472.

author keywords: Amyloplasts; cytoskeleton; gravitropism; SNARE; vacuole; wortmannin
MeSH headings : Androstadienes / pharmacology; Arabidopsis / drug effects; Arabidopsis / growth & development; Arabidopsis / ultrastructure; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; Gravitropism / drug effects; Gravitropism / physiology; Hypocotyl / drug effects; Hypocotyl / growth & development; Microscopy; Qb-SNARE Proteins / genetics; Qb-SNARE Proteins / physiology; Vacuoles / drug effects; Vacuoles / physiology; Vacuoles / ultrastructure; Wortmannin
TL;DR: The highly restricted movement of amyloplasts in graviperceptive cells of zig-1 hypocotyls is overcome by wortmannin treatment, suggesting a physical association between amylplasts and the vacuole. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Histological Analysis of the Arabidopsis Gynoecium and Ovules Using Chloral Hydrate Clearing and Differential Interference Contrast Light Microscopy

OOGENESIS: METHODS AND PROTOCOLS, Vol. 1457, pp. 1–7.

By: R. Franks n

Contributors: R. Franks n

author keywords: Ovule; Chloral hydrate; Nomarski optics; Ovary; Seed development; Seedpod
MeSH headings : Arabidopsis / cytology; Arabidopsis / physiology; Chloral Hydrate; Cytological Techniques; Microscopy, Interference; Ovule / cytology
TL;DR: The use of chloral hydrate optical clearing paired with differential interference contrast microscopy allows the analysis of internal structures of developing plant organs without the need for paraffin embedding and sectioning. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Cutting Out the Middle Man in Light-Hormone Interactions

Stepanova, A. N., & Alonso, J. M. (2016, December 5). DEVELOPMENTAL CELL, Vol. 39, pp. 524–526.

Contributors: A. Stepanova n & J. Alonso n

MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Ethylenes / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / genetics; Transcription Factors / genetics
TL;DR: Findings provide a paradigm for crosstalk between light and hormone signaling pathways in red-light-activated phytochrome B by bringing the F-box proteins EBF1 and 2 to the complex. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

A Tug of war for DNA methylation

Nature Plants, 2(11).

By: T. Hsieh

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface

PLOS ONE, 11(12).

By: V. Somalinga n, G. Buhrman n, A. Arun n, R. Rose n & A. Grunden n

Ed(s): A. Hofmann

MeSH headings : Carbonic Anhydrases / chemistry; Chlorides / chemistry; Chromatography, Gel; Crystallography, X-Ray; Dimerization; Molecular Dynamics Simulation; Photobacterium / enzymology; Protein Conformation
TL;DR: The first crystal structure of a pyschrohalophilic α-CA from a deep-sea bacterium, Photobacterium profundum, is reported and reveals a highly conserved “knot-topology” that is characteristic of α–CA’s. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Ontogenetic characterization of sporangium and spore of Huperzia serrata: an anti-aging disease fern

BOTANICAL STUDIES, 57(1).

author keywords: Huperzia serrata; Sporangium; Spore; Ontogenesis
TL;DR: The sporangial development of H. serrata belongs to the eusporangium type, and the development takes approximately 1 year from the initiation to the maturation, useful for improving propagation of this medicinal plant in the future. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Salt stress induces differential regulation of the phenylpropanoid pathway in Olea europaea cultivars Frantoio (salt-tolerant) and Leccino (salt-sensitive)

Journal of Plant Physiology, 204, 8–15.

author keywords: Kaempferol; Gene-expression; Olive tree; Quercetin; Salinity
MeSH headings : Gene Expression Regulation, Plant / drug effects; Genes, Plant; Kaempferols / analysis; Metabolic Networks and Pathways / drug effects; Metabolic Networks and Pathways / genetics; Olea / drug effects; Olea / genetics; Olea / growth & development; Olea / physiology; Organ Specificity / drug effects; Plant Leaves / drug effects; Plant Leaves / metabolism; Plant Roots / drug effects; Plant Roots / metabolism; Plant Stems / drug effects; Plant Stems / metabolism; Propanols / metabolism; Quercetin / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; Salt Tolerance / drug effects; Salt Tolerance / genetics; Sodium / metabolism; Sodium Chloride / pharmacology; Stress, Physiological / drug effects; Transcription, Genetic / drug effects
TL;DR: The data suggest that Frantoio copes with the toxicity imposed by elevated sodium not only with mechanisms of Na+ exclusion, but also promptly allocating effective and adequate antioxidant compounds to more sensitive organs. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
14. Life Below Water (OpenAlex)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Purification and characterization of a recombinant laccase-like multi-copper oxidase from Paenibacillus glucanolyticus SLM1

JOURNAL OF APPLIED MICROBIOLOGY, 121(5), 1335–1345.

By: S. Mathews n, C. Smithson* & A. Grunden n

author keywords: dye decolorization; laccase; lignin degradation; Paenibacillus glucanolyticus SLM1; recombinant expression
MeSH headings : Benzothiazoles / metabolism; Catechols / metabolism; Coloring Agents / metabolism; Hydrogen-Ion Concentration; Oxidoreductases / chemistry; Oxidoreductases / genetics; Oxidoreductases / isolation & purification; Oxidoreductases / metabolism; Paenibacillus / enzymology; Pyrogallol / analogs & derivatives; Pyrogallol / metabolism; Recombinant Proteins / chemistry; Recombinant Proteins / isolation & purification; Recombinant Proteins / metabolism; Sulfonic Acids / metabolism
TL;DR: The aim of this study was to evaluate the activity of a novel bacterial laccase‐like multi‐copper oxidase (LMCO) from Paenibacillus glucanolyticus SLM1: a bacterium isolated from pulp and paper waste. (via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1

Developmental Biology, 419(1), 19–25.

By: M. Luis Balaguer n, M. Ramos-Pezzotti n, M. Rahhal n, C. Melvin n, E. Johannes n, T. Horn n, R. Sozzani n

author keywords: Arabidopsis root; Light sheet; 3D printing; Time-lapse imaging
MeSH headings : Arabidopsis / ultrastructure; Arabidopsis Proteins / analysis; Cell Division; Computer-Aided Design; Cyclin B / analysis; Equipment Design; Green Fluorescent Proteins / analysis; Image Processing, Computer-Assisted / methods; Microscopy, Fluorescence / instrumentation; Microscopy, Fluorescence / methods; Plant Roots / ultrastructure; Printing, Three-Dimensional; Recombinant Fusion Proteins / analysis; Time-Lapse Imaging / instrumentation; Time-Lapse Imaging / methods
TL;DR: A Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) is developed that provides near-physiological imaging conditions and allows high-throughput time-course imaging experiments in the ZEISS Lightsheet Z.1, and its imaging capabilities are illustrated by following cell divisions, as an indicator of plant growth and development, over prolonged time periods. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Microbial diversity of extreme habitats in human homes

PEERJ, 4.

By: A. Savage*, J. Hills*, K. Driscoll, D. Fergus*, A. Grunden n & R. Dunn n

author keywords: Community Ecology; Extreme environments; Human Homes; Interactive effects; Microbialdiversity; Temperature; pH; Chemical
TL;DR: High-throughput sequencing techniques are used to assess bacterial and archaeal diversity in the extreme environments inside human homes with extreme temperature, pH, and chemical environmental conditions, finding a lower diversity of microbes in these extreme home environments compared to less extreme habitats in the home. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2016 journal article

FIE, a nuclear PRC2 protein, forms cytoplasmic complexes inArabidopsis thaliana

Journal of Experimental Botany, 67(21), 6111–6123.

By: M. Oliva*, Y. Butenko*, T. Hsieh n, O. Hakim*, A. Katz*, N. Smorodinsky*, D. Michaeli*, R. Fischer*, N. Ohad*

author keywords: Cytoplasm; FIE; MEA; PcG; Polycomb complex; PRC2
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Chromatin / metabolism; Chromatography, Gel; Cytoplasm / metabolism; Immunoprecipitation; Microscopy, Confocal; Plants, Genetically Modified; Polycomb Repressive Complex 2; Repressor Proteins / metabolism
TL;DR: FIE, a WD-40 subunit of the Arabidopsis PRC2 complexes known to take part in H3K27 methylation of nuclear chromatin, is also localized in cytoplasmic complexes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

A flow cytometric method for estimating S-phase duration in plants

JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087.

By: L. Mickelson-Young n, E. Wear n, P. Mulvaney n, T. Lee n, E. Szymanski n, G. Allen n, L. Hanley-Bowdoin n, W. Thompson n

author keywords: Arabidopsis; barley; EdU; flow cytometry; maize; replication timing; rice; S-phase duration; wheat
MeSH headings : Arabidopsis / cytology; Arabidopsis / growth & development; DNA, Plant / metabolism; Deoxyuridine / analogs & derivatives; Deoxyuridine / metabolism; Flow Cytometry / methods; G1 Phase / physiology; G2 Phase / physiology; Hordeum / cytology; Hordeum / growth & development; Meristem / cytology; Meristem / growth & development; Oryza / cytology; Oryza / growth & development; S Phase / physiology; Triticum / cytology; Triticum / growth & development; Zea mays / cytology; Zea mays / growth & development
TL;DR: This work estimated S-phase duration for several plant species by following EdU-labeled nuclei from G1 to G2 using bivariate flow cytometry, finding that S- phase duration is relatively consistent over a range of genome sizes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves

JOURNAL OF EXPERIMENTAL BOTANY, 67(15), 4697–4709.

author keywords: Chlorophyll; Glycine max; leaf light environment; light sheet microscopy; light use efficiency; photosynthesis; photosynthetic efficiency; soybean
MeSH headings : Chlorophyll / physiology; Chlorophyll / radiation effects; Chloroplasts / physiology; Chloroplasts / radiation effects; Color; Light; Microscopy / methods; Plant Leaves / physiology; Plant Leaves / radiation effects; Soybeans / physiology; Soybeans / radiation effects
TL;DR: Highlight Light sheet microscopy, a novel approach to quantifying light profiles, showed more gradual light attenuation in light- green soybean leaves compared to dark-green soybean. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Improvement of Acid Hydrolysis Procedures for the Composition Analysis of Herbaceous Biomass

Energy & Fuels, 30(10), 8260–8269.

By: M. Whitfield n, M. Chinn n & M. Veal*

UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

2016 journal article

Further insight into BRUTUS domain composition and functionality

PLANT SIGNALING & BEHAVIOR, 11(8).

By: A. Matthiadis n & T. Long n

Contributors: A. Matthiadis n & T. Long n

author keywords: Arabidopsis thaliana; BRUTUS (BTS); hemerythrin (HHE); iron homeostasis; multidomain protein; Pirh2; RING E3
MeSH headings : Arabidopsis / enzymology; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Hemerythrin / genetics; Hemerythrin / metabolism; Iron / metabolism; Iron Deficiencies; Ubiquitin-Protein Ligases / genetics; Ubiquitin-Protein Ligases / metabolism
TL;DR: It is concluded that enzymatic activity of BTS via the RING domain is essential for response to iron deficiency in plants. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Comparative Methylome Analyses Identify Epigenetic Regulatory Loci of Human Brain Evolution

Molecular Biology and Evolution, 33(11), 2947–2959.

author keywords: DNA methylation; human brain evolution; transcriptional divergence; differentially methylated regions; epigenomes
MeSH headings : Animals; Biological Evolution; Brain / physiology; CpG Islands; DNA Methylation; Epigenesis, Genetic; Evolution, Molecular; Female; Genomics; Humans; Macaca mulatta; Male; Pan troglodytes; Transcriptome
TL;DR: These findings indicate that there is substantial reprogramming of epigenomic landscapes during human brain evolution involving noncoding regions, and their regulatory potential is on par with those of promoter DMRs. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 article

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Stepanova, A. N., & Alonso, J. M. (2016, September 27). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744.

Contributors: A. Stepanova n & J. Alonso n

MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Genes, Plant; Homeostasis; Indoleacetic Acids / metabolism
TL;DR: The recent identification of a rice 2-oxoglutarate-dependent-Fe(II) dioxygenase, originally linked to male fertility in rice and capable of oxidizing IAA into oxIAA, has opened new avenues for addressing the physiological significance of auxin catabolism in plant growth and development. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Artemisinin biosynthesis in Artemisia annua and metabolic engineering: questions, challenges, and perspectives

Xie, D.-Y., Ma, D.-M., Judd, R., & Jones, A. L. (2016, December). PHYTOCHEMISTRY REVIEWS, Vol. 15, pp. 1093–1114.

By: D. Xie n, D. Ma n, R. Judd n & A. Jones n

author keywords: Artemisia annua; Artemisinin; Genetics; Malaria; Metabolic profiling; Sesquiterpenoid; Terpenoid
TL;DR: This work focuses on reviewing progresses achieved in understanding biosynthetic pathway, genetic breeding, metabolic engineering, and synthetic biology, and discusses multiple fundamental questions and challenges of artemisinin biosynthesis. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Stomatal acclimation to vapour pressure deficit doubles transpiration of small tree seedlings with warming

PLANT CELL AND ENVIRONMENT, 39(10), 2221–2234.

By: R. Marchin n, A. Broadhead n, L. Bostic n, R. Dunn n & W. Hoffmann n

author keywords: humidity; sap flux; stomata; stomatal conductance; temperature; warming experiment
MeSH headings : Acclimatization; Climate Change; Humidity; Plant Stomata / metabolism; Plant Stomata / physiology; Plant Transpiration; Seedlings / metabolism; Seedlings / physiology; Temperature; Trees / metabolism; Trees / physiology; Vapor Pressure
TL;DR: Stomatal acclimation maintained homeostasis of leaf T and carbon gain despite increased VPD, revealing that short-term stomatal responses to VPD may not be representative of long-term exposure. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2016 journal article

Where fire stops: vegetation structure and microclimate influence fire spread along an ecotonal gradient

PLANT ECOLOGY, 217(6), 631–644.

author keywords: Feedback; Fire ecology; Longleaf pine; Savanna; Streamhead pocosin; Wetland
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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