Works Published in 2020

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Displaying works 61 - 80 of 111 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2020 journal article

Phylogenomics, biogeography, and evolution of morphology and ecological niche of the eastern Asian-eastern North AmericanNyssa(Nyssaceae)

JOURNAL OF SYSTEMATICS AND EVOLUTION, 58(5), 571–603.

By: W. Zhou n, Q. Xiang n & J. Wen*

author keywords: eastern Asian-eastern North American-Central American disjunction; evolution of morphology and ecological niche; Fluidigm sequencing; gene tree; species tree; Nyssa; phylogenomics
TL;DR: A number of evolutionary changes in morphology and ecological niches are found between the EA–ENA disjunct, supporting the ecological selection driving trait evolutions after geographic isolation and demonstrating challenges in phylogenomic studies of lineages with rapid diversification histories. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: July 6, 2020

2020 journal article

Distinguishing Seedlings of Pines of Piedmont Upland Grassland Systems

CASTANEA, 85(1), 33–41.

By: A. Krings n

author keywords: Bayesian; juvenile trees; prairies; probabilistic identification; seedling identification
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: July 6, 2020

2020 journal article

Annual Signature in the Taproots of Echinacea laevigata and E. pallida (Asteraceae, Heliantheae)

CASTANEA, 85(1), 199–204.

By: A. Krings n, C. Jordan n, K. Culatta n, A. Szakacs n & G. Wilson n

author keywords: Heliophyte; herbchronology; Piedmont prairie
TL;DR: Results of recent work on Echinacea laevigata and E. pallida revealed an annual signature consistent with that reported for other herbaceous perennials, namely the development of clusters of vessels with conspicuously large diameters, marking annual spring root growth, followed by vessels of reduced diameter in the remainder of the year. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: July 6, 2020

2020 journal article

Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes

Plant Physiology, 183(3), 1110–1125.

MeSH headings : Alleles; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Binding Sites; Carbon-Sulfur Lyases / chemistry; Carbon-Sulfur Lyases / genetics; Carbon-Sulfur Lyases / metabolism; Cotyledon / genetics; Genetic Complementation Test; Genetic Loci; Heterozygote; Models, Molecular; Mutation / genetics; Phenotype; Plants, Genetically Modified; Protein Multimerization; Structure-Activity Relationship
TL;DR: This work identified an allelic series of fertile, hypomorphic Arabidopsis (Arabidopsis thaliana) mutants for the essential glucosinolate biosynthetic gene ROOTY (RTY) that exhibit a range of phenotypic defects characteristic of enhanced auxin production and underscores the importance of employing true null mutants in genetic complementation studies. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: ORCID
Added: July 2, 2020

2020 journal article

Computational solutions for modeling and controlling plant response to abiotic stresses: a review with focus on iron deficiency

Current Opinion in Plant Biology, 57, 8–15.

MeSH headings : Anemia, Iron-Deficiency; Arabidopsis / metabolism; Droughts; Gene Expression Regulation, Plant; Humans; Plant Proteins / genetics; Plant Proteins / metabolism; Stress, Physiological / genetics
TL;DR: The increasing development and use of statistical modeling and systematic modeling of transcriptomic data have provided significant insight into the gene regulatory mechanisms associated with abiotic stress responses and facilitated the plant science community's future goals of developing multi-scale models of responses to iron deficiency stress and other abiotic Stress conditions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
Source: ORCID
Added: July 1, 2020

2020 chapter

MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy

In Methods in Cell Biology (Vol. 160, pp. 405–418).

Contributors: I. Madison n, C. Melvin n, E. Buckner n, C. Williams n, R. Sozzani n & T. Long n

MeSH headings : Arabidopsis / cytology; Arabidopsis / growth & development; Cell Division; Imaging, Three-Dimensional; Microscopy, Fluorescence / methods; Seedlings / cytology; Seedlings / growth & development
TL;DR: This chapter describes a detailed method for preparing and imaging Arabidopsis thaliana seedlings for lightsheet microscopy via a Multi-Sample Imaging Growth Chamber (MAGIC), which allows simultaneous imaging of at least four samples. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: ORCID, Web Of Science, Crossref
Added: June 17, 2020

2020 chapter

BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana

In Methods in Cell Biology (Vol. 160, pp. 419–436).

Contributors: E. Buckner n, I. Madison n, C. Melvin n, T. Long n, R. Sozzani n & C. Williams n

MeSH headings : Arabidopsis / genetics; Automation; Gene Expression Regulation, Plant; Image Processing, Computer-Assisted; Plant Roots / anatomy & histology; Software; Time Factors
TL;DR: A procedure for analyzing 3D microscopy images to track spatiotemporal gene expression signals using the MATLAB-based BioVision Tracker software, which requires either a fluorescence image or a brightfield image to analyze root geometry and afluorescence image to capture and track temporal changes in gene expression. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: ORCID, Web Of Science, Crossref
Added: June 17, 2020

2020 journal article

Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN])

PLANT PHYSIOLOGY, 183(1), 206–220.

By: E. Wheeler n, A. Brooks n, L. Concia n, D. Vera*, E. Wear n, C. LeBlanc*, U. Ramu*, M. Vaughn ...

MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chromatin / metabolism; DNA Replication / genetics; DNA Replication / physiology; DNA, Plant / metabolism; DNA, Plant / physiology; Replication Origin / genetics; Replication Origin / physiology
TL;DR: A new functional assay to label and map very early replicating loci that must, by definition, include at least a subset of replication origins, and indicates that IRs are associated with accessible chromatin. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: June 15, 2020

2020 journal article

A resurrection study reveals limited evolution of thermal performance in response to recent climate change across the geographic range of the scarlet monkeyflower

Evolution, 74(8), 1699–1710.

author keywords: evolutionary rescue; geographic range; resurrection study; thermal adaptation; thermal performance curve
MeSH headings : Biological Evolution; California; Climate Change; Mimulus / genetics; Phylogeography; Seasons; Thermotolerance / genetics
TL;DR: The findings fail to support the hypothesis that evolutionary response to climate change is greatest at the leading edge, and suggest that the evolution of thermal performance is unlikely to rescue most populations from the detrimental effects of rapidly changing climate. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science; OpenAlex)
15. Life on Land (Web of Science)
Source: ORCID
Added: June 15, 2020

2020 journal article

Engineering Cercospora disease resistance via expression of Cercospora nicotianae cercosporin-resistance genes and silencing of cercosporin production in tobacco

PLOS ONE, 15(3), e0230362.

By: E. Thomas n, S. Herrero n, H. Eng n, N. Gomaa n, J. Gillikin n, R. Noar n, A. Beseli n, M. Daub n

Ed(s): R. Wilson

MeSH headings : Ascomycota / drug effects; Ascomycota / genetics; Disease Resistance / drug effects; Disease Resistance / genetics; Drug Resistance, Fungal / drug effects; Drug Resistance, Fungal / genetics; Gene Expression Regulation, Fungal / drug effects; Gene Silencing / drug effects; Genes, Fungal; Genetic Engineering; Perylene / analogs & derivatives; Perylene / pharmacology; Plants, Genetically Modified; Tobacco / microbiology; Transformation, Genetic; Transgenes
TL;DR: It is concluded that expression of fungal cercosporin autoresistance genes as well as silencing of the cercsporin pathway are both effective strategies for engineering resistance to Cercospora diseases where cercOSporin plays a critical role. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: June 8, 2020

2020 journal article

Population structure, landscape genomics, and genetic signatures of adaptation to exotic disease pressure in Cornus florida L.—Insights from GWAS and GBS data

Journal of Systematics and Evolution.

By: A. Pais n, R. Whetten n & Q. Xiang n

author keywords: Cornus florida; flowering dogwood; genotype by sequencing; GWAS; landscape ecological-evolutionary genomics
TL;DR: The results were congruent with previous studies that were based on a limited number of genetic markers in revealing high genetic variation and weak population structure in C. florida and overall there are slight trends to indicate marginally smaller amounts of genetic diversity in disease‐affected areas. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: ORCID
Added: June 2, 2020

2020 article

Revision of Fothergilla (Hamamelidaceae), including resurrection of F. parvifolia and a new species, F. milleri (vol 144, pg 57, 2020)

Haynes, J. E., Phillips, W. D., Krings, A., Lynch, N. P., & Ranney, T. G. (2020, May 8). PHYTOKEYS, pp. 117–118.

By: J. Haynes n, W. Phillips n, A. Krings n, N. Lynch n & T. Ranney n

Source: Web Of Science
Added: June 1, 2020

2020 journal article

Cotton leaf curl Multan virus beta C1 Protein Induces Autophagy by Disrupting the Interaction of Autophagy-Related Protein 3 with Glyceraldehyde-3-Phosphate Dehydrogenases([OPEN])

PLANT CELL, 32(4), 1124–1135.

By: A. Ismayil*, M. Yang*, Y. Haxim*, Y. Wang*, J. Li*, L. Han*, Y. Wang*, X. Zheng* ...

MeSH headings : Autophagy; Autophagy-Related Proteins / metabolism; Begomovirus / metabolism; Glyceraldehyde-3-Phosphate Dehydrogenases / metabolism; Plant Proteins / metabolism; Protein Binding; Tobacco / metabolism; Tobacco / ultrastructure; Tobacco / virology; Vacuoles / metabolism; Vacuoles / ultrastructure; Viral Proteins / metabolism
TL;DR: It is reported that the βC1 protein of Cotton leaf curl Multan betasatellite (CLCuMuB) interacts with cytosolic glyceraldehyde-3-phosphate dehydrogenase (GAPC), a negative autophagic regulator, to induce autophagy in Nicotiana benthamiana. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: May 18, 2020

2020 article

Microbe-dependent heterosis in maize

Wagner, M. R., Tang, C., Salvato, F., Clouse, K. M., Bartlett, A., Sermons, S., … Kleiner, M. (2020, May 7). (Vol. 5). Vol. 5.

By: M. Wagner*, C. Tang n, F. Salvato n, K. Clouse*, A. Bartlett n, S. Sermons n, M. Hoffmann n, P. Balint-Kurti n, M. Kleiner n

TL;DR: It is shown that heterosis of root biomass and other traits in maize is strongly dependent on the belowground microbial environment, an ecological phenomenon whereby soil microbes differentially impact the early growth of inbred and hybrid maize. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: ORCID
Added: May 10, 2020

2020 journal article

High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(16).

By: Y. Sato*, J. Wippler*, C. Wentrup*, N. Dubilier* & M. Kleiner n

TL;DR: High-quality metagenome-assembled genome sequences from the gutless marine worm Olavius algarvensis (Annelida) are presented, including an improved draft genome sequence of the previously described sulfate-reducing symbiont Delta1. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: May 8, 2020

2020 journal article

Co-encapsulation of slow release compounds and Rhodococcus rhodochrous ATCC 21198 in gellan gum beads to promote the long-term aerobic cometabolic transformation of 1,1,1-trichloroethane, cis-1,2-dichloroethene and 1,4-dioxane

Environmental Science: Processes & Impacts.

By: M. Rasmussen*, A. Saito*, M. Hyman n & L. Semprini*

MeSH headings : Biodegradation, Environmental; Dichloroethylenes; Dioxanes; Polysaccharides, Bacterial; Rhodococcus / chemistry; Trichloroethanes
TL;DR: The results demonstrate that the co-encapsulation technology can be a passive method for the cometabolic treatment of dilute groundwater plumes. (via Semantic Scholar)
Source: ORCID
Added: April 28, 2020

2020 review

Celtic Provenance in Traditional Herbal Medicine of Medieval Wales and Classical Antiquity

[Review of ]. FRONTIERS IN PHARMACOLOGY, 11.

author keywords: medicinal plants; ethnopharmacology; ethnobotany; herbal texts; bioactive compounds
TL;DR: This review provides initial evidence for traces of Celtic framework in the Welsh herbal tradition and warrants further investigations of bioactivity and clinical applications of the described plant leads. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: April 27, 2020

2020 journal article

Plant biomass, not plant economics traits, determines responses of soil CO2 efflux to precipitation in the C-4 grass Panicum virgatum

JOURNAL OF ECOLOGY, 108(5), 2095–2106.

author keywords: above-ground-below-ground linkages; ecosystem functioning; genotype-by-environment interactions; plant economics spectrum; precipitation variability; switchgrass; trait-based ecology
TL;DR: Estimates of C cycling can be improved by accounting for mediation of precipitation effects on JCO2 by plant economics traits and plant size in resource‐limited environments. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: ORCID, Web Of Science
Added: April 20, 2020

2020 journal article

Historical climate legacies on soil respiration persist despite extreme changes in rainfall

SOIL BIOLOGY & BIOCHEMISTRY, 143.

By: C. Hawkes n, M. Shinada* & S. Kivlin*

author keywords: Drought; Precipitation; Bacteria; Fungi; Grassland
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: April 20, 2020

2020 journal article

Gene expression networks in the Drosophila Genetic Reference Panel

GENOME RESEARCH, 30(3), 485–496.

By: L. Everett n, W. Huang n, S. Zhou n, M. Carbone n, R. Lyman n, G. Arya n, M. Geisz n, J. Ma* ...

MeSH headings : Animals; DNA Transposable Elements; Drosophila melanogaster / genetics; Drosophila melanogaster / metabolism; Drosophila melanogaster / microbiology; Female; Gene Expression Regulation; Gene Regulatory Networks; Genetic Variation; High-Throughput Nucleotide Sequencing; Male; Microbiota / genetics; Quantitative Trait Loci; Sequence Analysis, RNA
TL;DR: This study performed deep RNA sequencing of 200 Drosophila Genetic Reference Panel inbred lines with complete genome sequences and mapped expression quantitative trait loci for annotated genes, novel transcribed regions, transposable elements and microbial species, providing new insights regarding the role of natural genetic variation in regulating gene expression. (via Semantic Scholar)
Source: Web Of Science
Added: April 14, 2020

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