Plant and Microbial Biology

College of Agriculture and Life Sciences

Works Published in 2021

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Displaying works 61 - 80 of 116 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 journal article

Temperature and solvent exposure response of three fatty acid peroxygenase enzymes for application in industrial enzyme processes

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 571, 60–65.

author keywords: Hydrogen peroxide; Cytochrome P450 (CYP450); Peroxygenases; Biocatalysis; OleT; CYP152K6
MeSH headings : Acetone / chemistry; Acetone / metabolism; Bacillus / enzymology; Dimethylformamide / chemistry; Dimethylformamide / metabolism; Fatty Acids / metabolism; Mixed Function Oxygenases / metabolism; Solvents / chemistry; Solvents / metabolism; Temperature
Sources: ORCID, Web Of Science
Added: July 23, 2021

2021 journal article

Microbe-dependent heterosis in maize

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(30).

By: M. Wagner*, C. Tang n, F. Salvato n, K. Clouse*, A. Bartlett n, S. Vintila n, L. Phillips*, S. Sermons n ...

author keywords: hybrid vigor; microbiome; maize; endophytes; rhizosphere
MeSH headings : Bacteria / metabolism; Fungi / physiology; Hybrid Vigor; Seedlings / growth & development; Seedlings / microbiology; Soil Microbiology; Zea mays / growth & development; Zea mays / microbiology
Sources: Web Of Science, ORCID
Added: July 21, 2021

2021 article

Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set

Thomas, S. K., Liu, X., Du, Z.-Y., Dong, Y., Cummings, A., Pokorny, L., … Leebens-Mack, J. H. (2021, July 14). AMERICAN JOURNAL OF BOTANY, Vol. 7.

author keywords: ancient reticulation; Angiosperms353; asterids; coalescence; Cornales; gene flow; incomplete lineage sorting; phylogenomics; species tree estimation; target capture
MeSH headings : Cornaceae; Magnoliopsida / genetics; Phylogeny
Sources: ORCID, Web Of Science
Added: July 15, 2021

2021 article

The role of morpho-physiological traits in frost tolerance of neotropical savanna trees

De Antonio, A. C., Hoffmann, W. A., & Rossatto, D. R. (2021, June 18). TREES-STRUCTURE AND FUNCTION.

By: A. De Antonio*, W. Hoffmann n & D. Rossatto*

author keywords: Cerrado; Frost; Disturbance; Chlorophyll fluorescence
Source: Web Of Science
Added: July 12, 2021

2021 journal article

Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots

MOLECULAR SYSTEMS BIOLOGY, 17(6).

By: I. Betegon-Putze*, J. Mercadal*, N. Bosch*, A. Planas-Riverola*, M. Marques-Bueno*, J. Vilarrasa-Blasi*, D. Frigola*, R. Burkart* ...

author keywords: BRAVO; mathematical modelling; quiescent centre; root growth; WOX5
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Homeodomain Proteins / genetics; Meristem / genetics; Meristem / metabolism; Nitriles; Plant Roots / genetics; Plant Roots / metabolism
Sources: Web Of Science, ORCID
Added: July 12, 2021

2021 review

Leveraging synthetic biology approaches in plant hormone research

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.

By: C. Zhao, A. Yaschenko, J. Alonso & A. Stepanova

Sources: Web Of Science, ORCID
Added: June 28, 2021

2021 journal article

Balancing crop production and energy harvesting in organic solar-powered greenhouses

CELL REPORTS PHYSICAL SCIENCE, 2(3).

By: E. Ravishankar n, M. Charles n, Y. Xiong n, R. Henry n, J. Swift n, J. Rech*, J. Calero n, S. Cho n ...

Sources: Web Of Science, ORCID
Added: June 28, 2021

2021 journal article

The future of microbial ecological niche theory and modeling

New Phytologist, 231(2), 508–511.

author keywords: ecological niche modeling; microbiome; mycorrhizal fungi; niche envelope; species distribution modeling
MeSH headings : Ecosystem; Hydrogen-Ion Concentration; Mycorrhizae; Temperature
Source: ORCID
Added: June 16, 2021

2021 journal article

NASA GeneLab RNA-seq consensus pipeline: standardized processing of short-read RNA-seq data

ISCIENCE, 24(4).

By: E. Overbey*, A. Saravia-Butler*, Z. Zhang*, K. Rathi*, H. Fogle*, W. Silveira*, R. Barker*, J. Bass* ...

Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 review

Mass spectrometry-based proteomic platforms for better understanding of SARS-CoV-2 induced pathogenesis and potential diagnostic approaches

[Review of ]. PROTEOMICS, 21(10).

By: N. Ahsan*, R. Rao*, R. Wilson*, U. Punyamurtula*, F. Salvato n, M. Petersen*, M. Ahmed*, M. Abid* ...

author keywords: biomarkers; comparative proteomics; COVID‐ 19; kinase‐ substrate signaling; post‐ translational modifications; targeted proteomics; top‐ down proteomics
MeSH headings : Animals; COVID-19 / diagnosis; COVID-19 / metabolism; COVID-19 / pathology; Host-Pathogen Interactions; Humans; Mass Spectrometry / methods; Protein Interaction Mapping / methods; Protein Interaction Maps; Protein Kinases / analysis; Protein Kinases / metabolism; Protein Processing, Post-Translational; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Receptor, EphA2 / analysis; Receptor, EphA2 / metabolism; SARS-CoV-2 / physiology; Signal Transduction
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Abundance of spring- and winter-active arthropods declines with warming

ECOSPHERE, 12(4).

author keywords: abundance declines; arthropods; climate change; global warming; insects; seasonality
Source: Web Of Science
Added: June 10, 2021

2021 journal article

Heat shock proteins and small nucleolar RNAs are dysregulated in a Drosophila model for feline hypertrophic cardiomyopathy

G3-GENES GENOMES GENETICS, 11(1).

By: C. Tallo n, L. Duncan n, A. Yamamoto n, J. Slaydon n, G. Arya n, L. Turlapati n, T. Mackay*, M. Carbone n

author keywords: MYBPC3; cMyBP-C; Drosophila melanogaster; feline HCM; hypertrophic cardiomyopathy
MeSH headings : Animals; Cardiomyopathy, Hypertrophic / genetics; Carrier Proteins / genetics; Cats; Disease Models, Animal; Drosophila; Drosophila melanogaster; Female; Heat-Shock Proteins / genetics; Mutation; RNA, Small Nucleolar / genetics
Source: Web Of Science
Added: June 10, 2021

2021 article

Savannas are not old fields: Functional trajectories of forest expansion in a fire-suppressed Brazilian savanna are driven by habitat generalists

Flake, S. W., Abreu, R. C. R., Durigan, G., & Hoffmann, W. A. (2021, May 17). FUNCTIONAL ECOLOGY.

author keywords: cerrado; community-weighted mean; competition; environmental filtering; fire suppression; functional traits; savanna-forest transition; succession
Source: Web Of Science
Added: June 10, 2021

2021 review

Leveraging Pseudomonas Stress Response Mechanisms for Industrial Applications

[Review of ]. FRONTIERS IN MICROBIOLOGY, 12.

By: K. Craig*, B. Johnson* & A. Grunden n

author keywords: stress; Pseudomonas; formulation; heat; desiccation; cold; biofilm; chaperone
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Draft Genome Sequences of Four Aerobic Isobutane-Metabolizing Bacteria

MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 10(18).

By: W. Chen n, N. Faulkner n, C. Smith n, M. Fruchte n & M. Hyman n

Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis

DEVELOPMENTAL CELL, 56(10), 1484-+.

MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Membrane / metabolism; Cell Wall / metabolism; GTP-Binding Proteins / genetics; GTP-Binding Proteins / metabolism; Glucosyltransferases / metabolism; Membrane Proteins / metabolism; Multiprotein Complexes / metabolism; Mutation / genetics; Protein Binding; Receptors, G-Protein-Coupled / metabolism; Seedlings / growth & development; Seedlings / ultrastructure; Signal Transduction; Stress, Physiological; trans-Golgi Network / metabolism; trans-Golgi Network / ultrastructure
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 review

The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution

[Review of ]. PHYTOBIOMES JOURNAL, 5(1), 14–28.

author keywords: agriculture; bacteria; bioenergy; biofuel; endophyte; fungi; genomics; microbiome; mutualism; mycorrhizae; nutrient cycling; Panicum virgatum; perennial crop; plant-microbe interactions; plants; rhizosphere and phyllosphere; soil ecology; yield and crop productivity
Source: Web Of Science
Added: June 10, 2021

2021 journal article

Long-term cometabolic transformation of 1,1,1-trichloroethane and 1,4-dioxane by Rhodococcus rhodochrous ATCC 21198 grown on alcohols slowly produced by orthosilicates

JOURNAL OF CONTAMINANT HYDROLOGY, 240.

By: R. Murnane*, W. Chen n, M. Hyman n & L. Semprini*

author keywords: Cometabolism; Orthosilicates; Activity based labeling; Hydrolysis; 1,4-dioxane; 1,1,1-trichloroethane
MeSH headings : Alcohols; Biodegradation, Environmental; Dioxanes; Rhodococcus; Trichloroethanes
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 article

Comparative phylogenomic analysis reveals evolutionary genomic changes and novel toxin families in endophytic Liberibacter pathogens

Tan, Y., Wang, C., Schneider, T., Li, H., Souza, R. F., Tang, X., … Zhang, D. (2021, June 5). (Vol. 6). Vol. 6.

By: Y. Tan*, C. Wang*, T. Schneider*, H. Li*, R. Souza*, X. Tang n, T. Hsieh*, X. Wang n, X. Li*, D. Zhang*

Source: ORCID
Added: June 6, 2021

2021 journal article

SnRK1: a versatile plant protein kinase that limits geminivirus infection

CURRENT OPINION IN VIROLOGY, 47, 18–24.

By: W. Shen n & L. Hanley-Bowdoin n

MeSH headings : Disease Resistance; Geminiviridae / genetics; Geminiviridae / metabolism; Geminiviridae / physiology; Host-Pathogen Interactions; Phosphorylation; Plant Diseases / virology; Plant Proteins / genetics; Plant Proteins / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Viral Proteins / genetics; Viral Proteins / metabolism
Sources: Web Of Science, ORCID
Added: May 17, 2021