Works Published in 2017
Displaying works 81 - 100 of 121 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2017 review
Vacuolar trafficking and biogenesis: a maturation in the field
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 40, 77–81.
Contributors: C. Brillada n & M. Rojas-Pierce n
MeSH headings : Organelle Biogenesis; Plant Physiological Phenomena; Plant Proteins / metabolism; Protein Transport; Vacuoles / metabolism
TL;DR:
Recent evidence is summarized that indicates conserved and plant-specific mechanisms involved in sorting and trafficking of proteins to this major organelle are indicated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development
Proceedings of the National Academy of Sciences, 114(45), E9730–E9739.
author keywords: seed development; DNA methylation; soybean; Arabidopsis; transposon
MeSH headings : Arabidopsis / genetics; Base Sequence; DNA Methylation / genetics; DNA Methylation / physiology; DNA Transposable Elements / genetics; DNA Transposable Elements / physiology; DNA, Plant / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Gene Silencing; Genes, Plant / genetics; Genome, Plant / genetics; Germination / genetics; Plant Proteins / genetics; Plant Proteins / metabolism; RNA, Plant / genetics; RNA, Plant / metabolism; Seedlings / genetics; Seedlings / metabolism; Seeds / cytology; Seeds / genetics; Seeds / growth & development; Soybeans / genetics
TL;DR:
The results suggest that soybean and Arabidopsis seed methylomes are similar, and that DNA methylation does not play a significant role in regulating many genes important for seed development.
(via Semantic Scholar)
www.pnas.org (publisher PDF)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2017 journal article
Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729.
author keywords: reciprocal cross-regulation; NAC transcription factors; alternative splicing; wood formation; Populus trichocarpa
MeSH headings : Alternative Splicing; Cell Wall / genetics; Cell Wall / metabolism; Cloning, Molecular; DNA, Plant; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genes, Plant; Homeostasis; Multigene Family; Nuclear Proteins; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Shoots / genetics; Plant Shoots / metabolism; Populus / genetics; Populus / metabolism; Recombinant Proteins / genetics; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptional Activation / genetics; Transcriptome; Wood / genetics; Wood / growth & development; Xylem / genetics; Xylem / growth & development
TL;DR:
The results indicate that the splice variants from the PtrVND6 and PtrSND1 family may exert reciprocal cross-regulation for complete transcriptional regulation of these two families in wood formation, suggesting a general mechanism among NAC domain proteins and likely other transcription factors.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Invasibility of a fire-maintained savanna-wetland gradient by non-native, woody plant species
FOREST ECOLOGY AND MANAGEMENT, 405, 229–237.
author keywords: Establishment limitation; Fire ecology; Pins palustris; Pyrus calletyana; Seedling recruitment; Streamhead pocosin
TL;DR:
It is found P. calleryana survival and establishment to be a function of seedling size, soil humic matter content, and sowing treatment, and prescribed fire as important factors for controlling woody invasion.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Comment on "The extent of forest in dryland biomes"
Source: NC State University Libraries
Added: August 6, 2018
2017 journal article
Assessing species biomass contributions in microbial communities via metaproteomics
NATURE COMMUNICATIONS, 8.
MeSH headings : Archaea / classification; Archaea / genetics; Archaea / metabolism; Bacteria / classification; Bacteria / genetics; Bacteria / metabolism; Bacteriophages / classification; Bacteriophages / genetics; Bacteriophages / metabolism; Biomass; Genomics / methods; Humans; Lakes / microbiology; Microbiota / genetics; Microbiota / physiology; Proteome / metabolism; Proteomics / methods; RNA, Ribosomal, 16S / genetics; Saliva / microbiology
TL;DR:
The method is applied to communities from two different environments, microbial mats from two alkaline soda lakes, and saliva from multiple individuals and it is shown that assessment of species biomass contributions adds an important dimension to the analysis of microbial community structure.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Alterations of CorTFL1 and CorAP1 expression correlate with major evolutionary shifts of inflorescence architecture in Cornus (Cornaceae) - a proposed model for variation of closed inflorescence forms
NEW PHYTOLOGIST, 216(2), 519–535.
Contributors: Q. Ma n, X. Liu n, R. Franks n & Q. Xiang n
author keywords: CorAP1; Cornus; CorTFL1; evolutionary development; gene expression; inflorescence; in situ hybridization; quantitative real-time polymerase chain reaction (qRT-PCR)
MeSH headings : Biological Evolution; Cornaceae / anatomy & histology; Cornaceae / genetics; Cornaceae / growth & development; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; In Situ Hybridization; Inflorescence / anatomy & histology; Inflorescence / genetics; Models, Biological; Models, Genetic; Phylogeny; Plant Proteins / genetics; Plant Proteins / metabolism; Real-Time Polymerase Chain Reaction; Species Specificity
TL;DR:
The study found a clear correlation between the expression patterns of CorTFL1 and CorAP1 and the inflorescence architecture in a natural system displaying closed inflorescences and proposes that a TFL1-like and AP1- like gene-based model may explain variation of closed inflorescenceences in Cornus and other lineages.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae
PLANT JOURNAL, 92(5), 796–807.
author keywords: Arabidopsis; BCTV; CaLCuV; geminivirus; gip-1; immunity; Pla-1; VIGS
MeSH headings : Arabidopsis / virology; Geminiviridae / immunology; Gene Silencing; Plant Diseases / immunology; Plant Diseases / virology; Plant Immunity; Quantitative Trait Loci / genetics
TL;DR:
The recessive nature of resistance to CaLCuV and the lack of obvious candidate genes near the gip‐1 locus suggest that a novel resistance gene(s) confers immunity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 journal article
Repliscan: a tool for classifying replication timing regions
BMC BIOINFORMATICS, 18, 1–14.
author keywords: DNA replication; Repli-seq; Classification
MeSH headings : DNA Replication Timing; Genome; Genome Size; High-Throughput Nucleotide Sequencing / methods; Sequence Analysis, DNA / methods; Software
TL;DR:
To accurately detect and classify regions of replication across the genome, Repliscan is presented, which robustly normalizes, automatically removes outlying and uninformative data points, and classifies Repli-seq signals into discrete combinations of replication signatures.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Escherichia coli O157:H7 Acid Sensitivity Correlates with Flocculation Phenotype during Nutrient Limitation
FRONTIERS IN MICROBIOLOGY, 8.
author keywords: STEC; acid resistance; nutrient limitation; curli; GcvB
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 article
Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle (vol 8, pg 889, 2017)
Estrada-Johnson, E., Csukasi, F., Pizarro, C. M., Vallarino, J. G., Kiryakova, Y., Vioque, A., … Valpuesta, V. (2017, July 24). FRONTIERS IN PLANT SCIENCE, Vol. 8.
author keywords: auxin; fruit; strawberry; transcriptome regulation; ripening
TL;DR:
This paper presents a meta-analyses of the determinants of infectious disease in eight operation theatres of the immune system and three of them are confirmed to be immune-to-inflammatory bowel diseases.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 journal article
Physiological responses to short-term thermal stress in mayfly (Neocloeon triangulifer) larvae in relation to upper thermal limits
JOURNAL OF EXPERIMENTAL BIOLOGY, 220(14), 2598–2605.
author keywords: Temperature; Aerobic scope; Hypoxia; Aquatic insect; Gene expression
MeSH headings : Acclimatization / physiology; Animals; Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone / pharmacology; Ecosystem; Ephemeroptera / growth & development; Ephemeroptera / physiology; Gene Expression; Hot Temperature / adverse effects; Larva / growth & development; Larva / physiology; Oxygen / physiology; Oxygen Consumption / drug effects; Oxygen Consumption / physiology
TL;DR:
The results suggest that the chronic thermal limits of this species are likely not driven by oxygen limitation, but rather are determined by other factors, e.g. bioenergetics costs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Overexpression of a type-I isopentenyl pyrophosphate isomerase of Artemisia annua in the cytosol leads to high arteannuinB production and artemisinin increase
Plant Journal, 91(3), 466–479.
MeSH headings : Artemisia annua / enzymology; Artemisia annua / genetics; Artemisia annua / metabolism; Artemisinins / metabolism; Carbon-Carbon Double Bond Isomerases / genetics; Carbon-Carbon Double Bond Isomerases / metabolism; Cytosol / enzymology; Cytosol / metabolism; Hemiterpenes; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified / enzymology; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism
TL;DR:
Evidence is provided that overexpression of AaIPPI1 in the cytosol can lead to metabolic alterations of terpenoid biosynthesis, and it is shown that transgenic plants have the potential to yield high production levels of arteannuin B as a new precursor source for artemisinin.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2017 journal article
Construction and setup of a bench-scale algal photosynthetic bioreactor with temperature, light, and pH monitoring for kinetic growth tests
Journal of Visualized Experiments, 2017(124).
Contributors: A. Karam n, C. McMillan n, Y. Lai n, F. De Los Reyes n , H. Sederoff n , A. Grunden n , R. Ranjithan n , J. Levis n, J. Ducoste n
author keywords: Bioengineering; Issue 124; Photosynthetic bioreactors; microalgae; growth kinetics; biofuel; temperature; light; pH; automated monitoring
MeSH headings : Biofuels; Bioreactors / microbiology; Hydrogen-Ion Concentration; Kinetics; Light; Microalgae / growth & development; Models, Biological; Photosynthesis; Temperature
TL;DR:
This protocol describes how to size and assemble a flat-plate, bench-scale PBR from acrylic and details how to configure a PBR with continuous pH, light, and temperature monitoring using a data acquisition and control unit, analog sensors, and open-source data acquisition software.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(Web of Science)
Sources: ORCID, NC State University Libraries, NC State University Libraries
Added: August 6, 2018
2017 journal article
Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632–E7640.
author keywords: root stem cell; root development; cell-type expression profile; gene regulatory network; modeling
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / genetics; Stem Cells / metabolism; Transcription Factors / genetics; Transcriptome / genetics
TL;DR:
A computational pipeline that uses gene expression datasets for inferring relationships among genes and predicting their importance and a gene regulatory network inference algorithm that combines clustering with dynamic Bayesian network inference that identified PERIANTHIA as an important molecular regulator of quiescent center function.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 journal article
Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii
PLANT PHYSIOLOGY, 175(1), 376–391.
MeSH headings : Adaptation, Physiological / genetics; Bayes Theorem; Desert Climate; Gene Regulatory Networks; Organ Specificity; Phenotype; Plant Leaves / anatomy & histology; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / physiology; Quantitative Trait Loci / genetics; Sequence Analysis, RNA; Solanum / anatomy & histology; Solanum / genetics; Solanum / growth & development; Solanum / physiology
TL;DR:
A custom-built confocal profilometer was used to directly measure leaf thickness in a set of introgression lines (ILs) derived from the desert tomato Solanum pennellii and identified quantitative trait loci to establish a framework of genetic, anatomical, and molecular mechanisms that pattern leaf thicknessIn desert-adapted tomato.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 journal article
Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7641–E7649.
author keywords: plant hormones; cell differentiation; root meristem; computational modeling
MeSH headings : Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / metabolism; Biological Transport / physiology; Cell Differentiation / physiology; Cell Division / physiology; Cytokinins / metabolism; Gene Expression Regulation, Plant / physiology; Indoleacetic Acids / metabolism; Meristem / metabolism; Meristem / physiology; Plant Growth Regulators / metabolism; Plant Roots / metabolism; Plant Roots / physiology; Signal Transduction / physiology
TL;DR:
Computational modeling and molecular genetics show that boundary formation is dependent on cytokinin’s control on auxin polar transport and degradation, and the regulation of both processes shapes the auxin profile in a well-defined auxin minimum.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
A gene encoding maize caffeoyl-CoA O-methyltransferase confers quantitative resistance to multiple pathogens
NATURE GENETICS, 49(9), 1364-+.
MeSH headings : Apoptosis / genetics; Chromosome Mapping / methods; Disease Resistance / genetics; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Genes, Plant / genetics; Lignin / metabolism; Methyltransferases / genetics; Methyltransferases / metabolism; Microscopy, Fluorescence; Mutation; Phenylpropionates / metabolism; Plant Diseases / genetics; Plant Diseases / microbiology; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Leaves / microbiology; Plants, Genetically Modified; Quantitative Trait Loci / genetics; Reverse Transcriptase Polymerase Chain Reaction; Zea mays / genetics; Zea mays / metabolism; Zea mays / microbiology
TL;DR:
It is suggested that resistance might be caused by allelic variation at the level of both gene expression and amino acid sequence, thus resulting in differences in levels of lignin and other metabolites of the phenylpropanoid pathway and regulation of programmed cell death.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2017 journal article
Effects of highway pollution on forest lichen community structure in western Wake County, North Carolina, USA
Bryologist, 120(1), 1–10.
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: NC State University Libraries
Added: August 6, 2018
2017 journal article
Thiazolopyridines Improve Adipocyte Function by Inhibiting 11 Beta-HSD1 Oxoreductase Activity
Journal of Chemistry, 2017, 1–10.
TL;DR:
The tetrahydrothiazolopyridine moiety served as an active pharmacophore for inhibiting 11β-HSD1 and offered a novel therapeutic strategy to ameliorate metabolic alterations found in obesity and diabetes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018
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