Plant and Microbial Biology

Works Published in 2020

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Displaying works 101 - 111 of 111 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2020 journal article

Mass Spectrometry-Based Identification of Phospho-Tyr in Plant Proteomics

Journal of Proteome Research, 19(2), 561–571.

By: N. Ahsan *, R. Wilson*, R. Rao *, F. Salvato n , M. Sabila*, H. Ullah *, J. Miernyk*

author keywords: mass spectrometry; plant proteomics; regulation; signaling; tyrosine phosphorylation
MeSH headings : Amino Acid Motifs; Chromatography, Affinity / methods; Gene Ontology; Mass Spectrometry / methods; Phosphoproteins / metabolism; Phosphorylation; Phosphotyrosine / metabolism; Plants / metabolism; Protein Processing, Post-Translational / genetics; Protein Processing, Post-Translational / physiology; Proteome / metabolism; Proteomics / methods; Signal Transduction / genetics; Signal Transduction / physiology; Tyrosine / analogs & derivatives; Tyrosine / metabolism; src Homology Domains
TL;DR: A strategy is proposed that will allow a depth of coverage of the plant pY-proteome comparable to that achieved in mammalian systems and implies previously unappreciated roles for this "animal PTM" in plants. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: ORCID
Added: January 23, 2020

2020 journal article

Functional demonstration of plant flavonoid carbocations proposed to be involved in the biosynthesis of proanthocyanidins

PLANT JOURNAL, 101(1), 18–36.

By: P. Wang *, Y. Liu *, L. Zhang *, W. Wang *, H. Hou*, Y. Zhao *, X. Jiang *, J. Yu * ...

author keywords: plant flavonoid carbocation; epicatechin carbocation; catechin carbocation; (-)-epicatechin; proanthocyanidins
MeSH headings : Camellia sinensis / genetics; Camellia sinensis / metabolism; Flavonoids / metabolism; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; NADH, NADPH Oxidoreductases / genetics; NADH, NADPH Oxidoreductases / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Proanthocyanidins / biosynthesis
TL;DR: The use of an integrative strategy including enzymatic assays, mutant analysis, metabolic engineering, isotope labeling, and metabolic profiling to capture and demonstrate PFCs indicate that flavan-3-ol carbocations exist in extracts and are involved in the biosynthesis of PAs of plants. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: January 13, 2020

2020 journal article

An Improved Recombineering Toolset for Plants

The Plant Cell.

By: J. Brumos  n, C. Zhao  n, Y. Gong  n, D. Soriano n, A. Patel n, M. Perez-Amador  n, A. Stepanova n , J. Alonso  n

MeSH headings : Arabidopsis / genetics; Chromosomes, Artificial, Bacterial; Gene Editing / methods; Genes, Reporter; Genetic Engineering / methods; Plants / genetics; Plants, Genetically Modified / genetics; Recombination, Genetic
TL;DR: A scalable recombinase-mediated cassette exchange system to facilitate the transfer of the desired sequences from a bacterial artificial chromosome clone to a transformation-compatible binary vector is developed, expanding the use of the recombineering approaches beyond Arabidopsis (Arabidopsis thaliana). (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: ORCID
Added: January 11, 2020

2020 journal article

Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)

ISME JOURNAL, 14(1), 104–122.

By: A. Assie *, N. Leisch *, D. Meier *, H. Gruber-Vodicka *, H. Tegetmeyer*, A. Meyerdierks *, M. Kleiner* , T. Hinzke * ...

MeSH headings : Animals; Bivalvia / microbiology; Carbon Cycle; Citric Acid Cycle; Epsilonproteobacteria / classification; Epsilonproteobacteria / genetics; Epsilonproteobacteria / metabolism; Gammaproteobacteria / genetics; Photosynthesis; Phylogeny; Symbiosis
TL;DR: This work discovered campylobacterotal epibionts (“Candidatus Thiobarba”) of deep-sea mussels that have acquired a complete CBB cycle and may have lost most key genes of the rTCA cycle, calling into question current assumptions about the distribution of carbon fixation pathways in microbial lineages, and the interpretation of stable isotope measurements in the environment. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: January 6, 2020

2020 journal article

Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors

Small Methods.

By: J. Fernandez‐Moreno n & A. Stepanova n 

author keywords: biosensors; ethylene; hormones; reporters; signaling
TL;DR: This manuscript focuses on the different approaches employed by plant biologists to monitor ethylene biosynthesis and action in plants, with a special emphasis made on genetically encoded sensors. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2020 journal article

Distinct taxonomic and phylogenetic patterns of plant communities on acid and limestone soils in subtropical and tropical China

JOURNAL OF VEGETATION SCIENCE, 31(1), 194–207.

By: C. Liu *, X. Qiao *, Z. Wang *, S. Lu*, M. Hou*, T. Wentworth n, D. Hou *, K. Guo *

author keywords: beta diversity; cluster analysis; environmental filtering; karst vegetation; limestone forest; ordination; phylogenetic diversity; species turnover; vegetation classification
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: December 9, 2019

2020 journal article

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL, 101(3), 716–730.

By: R. Spurney n, L. Broeck  n, N. Clark n, A. Fisher n, M. Balaguer n & R. Sozzani  n

author keywords: Arabidopsis thaliana; gene regulatory network inference; graphical user interface; RNA sequencing processing; stem cell maintenance; technical advance
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology; Gene Expression Regulation, Plant; Gene Regulatory Networks / genetics; Genome, Plant / genetics; Sequence Analysis, RNA; Transcriptome
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID
Added: December 9, 2019

2020 journal article

Range edges in heterogeneous landscapes: Integrating geographic scale and climate complexity into range dynamics

Global Change Biology, 26(3), 1055–1067.

By: M. Oldfather *, M. Kling *, S. Sheth n , N. Emery * & D. Ackerly *

author keywords: climatic niche; microclimate; range limit theory; range shifts; topography
MeSH headings : Biodiversity; Climate Change; Ecology; Ecosystem; Geography
TL;DR: It is argued that three factors—climate heterogeneity, collinearity among climate variables, and spatial scale—interact to shape the spatial structure of range edges along climate gradients, and several ways that these factors influence the stability of species range edges with a changing climate are discussed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science; OpenAlex)
15. Life on Land (Web of Science)
Source: ORCID
Added: December 3, 2019

2020 journal article

Accurate forest projections require long-term wood decay experiments because plant trait effects change through time

GLOBAL CHANGE BIOLOGY, 26(2), 864–875.

By: B. Oberle *, M. Lee n, J. Myers *, O. Osazuwa-Peters *, M. Spasojevic *, M. Walton*, D. Young*, A. Zanne *

author keywords: carbon cycle; plant traits; temperate forest; temporal scale; wood decay; woody debris
MeSH headings : Carbon Cycle; Ecosystem; Forests; Trees; Wood
TL;DR: Denser wood loses mass more slowly at first but more quickly with advancing decay, which resolves ambiguity about the after‐life consequences of this key plant functional trait by demonstrating that its effect on decay depends on experiment duration and sampling frequency. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: December 2, 2019

2020 journal article

Community turnover by composition and climatic affinity across scales in an alpine system

AMERICAN JOURNAL OF BOTANY, 107(2), 239–249.

By: B. Smithers*, M. Oldfather *, M. Koontz *, J. Bishop*, C. Bishop*, J. Nachlinger*, S. Sheth n 

author keywords: alpine ecology; beta diversity; climatic niche mean; elevation gradient; GLORIA; Great Basin; Global Observation Research Initiative in Alpine Environments; species turnover; community assembly; White Mountains
MeSH headings : Biodiversity; California; Climate Change; Ecosystem; Microclimate; Plants
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science; OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: December 2, 2019

2020 journal article

Better lucky than good: How savanna trees escape the fire trap in a variable world

ECOLOGY, 101(1).

By: W. Hoffmann n, R. Sanders n, M. Just n, W. Wall* & M. Hohmann *

author keywords: demographic threshold; fire trap; Quercus; savanna; stochasticity; tree dynamics
MeSH headings : Ecosystem; Grassland; Models, Theoretical
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: November 18, 2019

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