Works Published in 2023
Displaying works 1 - 20 of 89 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2023 article
Multi-signal regulation of the GSK-3β homolog Rim11 governs meiosis entry in yeast
Kociemba, J., Jørgensen, A. C. S., Tadic, N., Harris, A., Sideri, T., Chan, W. Y., … Werven, F. (2023, September 22).
TL;DR:
It is proposed that the signalling-regulatory network described here generates robustness in cell-fate control in meiosis by integrating multiple input signals to control Ume6 phosphorylation and EMG transcription.
(via Semantic Scholar)
doi.org (repository)
Source: ORCID
Added: April 1, 2024
2023 article
Functional characterization of 2-oxoglutarate-dependent dioxygenase gene family in chickpea
Saxena, S., Pal, G., & Pandey, A. (2023, November). PLANT SCIENCE, Vol. 336.
author keywords: Chickpea; Biosynthesis pathway; Gene complementation; Bifunctionality; Metabolite content
TL;DR:
This study elucidates the functionality of 2-oxoglutarate dependent dioxygenase (2-ODD) gene family members i.e., flavanone-3-hydroxylase (F3H), flavonol synthase (FLS) and anthocyanidin synthases (ANS) in chickpea using heterologous bacterial system and in-planta studies in Arabidopsis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: Web Of Science
Added: February 26, 2024
2023 journal article
Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple
SCIENTIFIC REPORTS, 13(1).
Sources: Web Of Science, NC State University Libraries
Added: February 26, 2024
2023 article
Pangenomes reveal genomic signatures of microbial adaptation to experimental soil warming
Choudoir, M. J., Narayanan, A., Rodriguez-Ramos, D., Simoes, R., Efroni, A., Sondrini, A., & DeAngelis, K. M. (2023, March 17).
TL;DR:
Data from an ongoing in situ soil warming experiment at the Harvard Forest Long-term Ecological Research (LTER) site illustrate the emergence of lineage-specific traits as well as common ecological-evolutionary microbial responses to climate change.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Source: ORCID
Added: February 2, 2024
2023 chapter
HPLC-MS<sup>(n)</sup> Applications in the Analysis of Anthocyanins in Fruits
In High Performance Liquid Chromatography - Recent Advances and Applications.
Source: ORCID
Added: January 29, 2024
2023 journal article
Anti-COVID-19 Pandemic Effect of Plant Flavonoids: Use of Green Tea Flavonoids
Journal of Jishou University (NaturalSciencesEdition).
Contributors: X. De Yu, X. De Yu, X. De Yu, S. Yuzuak, Y. Zhu & Q. Peng
Ed(s): X. De Yu
Source: ORCID
Added: January 29, 2024
2023 review
Open questions in the social lives of viruses
[Review of ]. JOURNAL OF EVOLUTIONARY BIOLOGY, 36(11), 1551–1567.
author keywords: cheating; conflict; cooperation; evolutionary theory; natural history; population genetics, social evolution; virology; virus evolution
TL;DR:
The ways in which viruses can interact socially, including consequences for social evolution and evolvability are summarized, and some open questions raised by viruses that could challenge concepts within social evolution theory are outlined.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: January 29, 2024
2023 journal article
Plant-soil feedback under drought: does history shape the future?
TRENDS IN ECOLOGY & EVOLUTION, 38(8), 708–718.
TL;DR:
It is hypothesised that plants and microbes with a shared drought history experience more positive PSF under subsequent drought, and future studies need to explicitly include plant-microbial co-occurrence and potential co-adaptation and consider the precipitation history experienced by both plants and microbial.
(via Semantic Scholar)
Source: Web Of Science
Added: January 29, 2024
2023 journal article
Archaeal communities discovered in the phytotelmata of Nepenthes alata Blco. samples obtained from Mt. Makiling, Philippines as revealed by high-throughput molecular sequencing analysis
International Journal of Agricultural Technology.
Contributors: N. Alcantara, B. Mendoza, N. Sabino, J. Simbahan, J. Balatibat, F. Reyes, M. Hyman
Source: ORCID
Added: January 28, 2024
2023 journal article
Aerobic cometabolic biodegradation of 1,4-dioxane and its associated Co-contaminants
Current Opinion in Environmental Science & Health.
Source: ORCID
Added: January 28, 2024
2023 conference paper
Optimal Brain Dissection in Dense Autoencoders: Towards Determining Feature Importance in -Omics Data
Amin, F., Broeck, L. V., Smet, I. D., Locke, A. M., & Sozzani, R. (2023, November 28).
TL;DR:
This paper introduced Optimal Brain Dissection (OBD), an innovative methodology designed to examine the importance of first-layer connections in a biology-inspired autoencoder, aiming to understand the relative importance of connections for autoencoder performance.
(via Semantic Scholar)
Source: ORCID
Added: January 25, 2024
2023 article
Quantitative Modeling of the Short-Term Response to Nitrogen Availability that Coordinates Early Events in Lateral Root Initiation
Gaudinier, A., Broeck, L. V., Moreno-Risueño, M., Rodriguez-Medina, J., Sozzani, R., & Brady, S. M. (2023, December 6).
TL;DR:
Linking the N time course transcriptomics, LR mutant phenotypes, and cell-type specific single cell profiling, these approaches provide multiple lines of evidence to find and test the roles of TFs that are involved in early root patterning responses to N conditions.
(via Semantic Scholar)
Source: ORCID
Added: January 25, 2024
2023 conference paper
Prediction and functional characterization of transcriptional activation domains
Mahatma, S., Broeck, L. V., Morffy, N., Staller, M. V., Strader, L. C., & Sozzani, R. (2023, March 22).
TL;DR:
This work used an unsupervised learning approach to classify the ADs into 10 subclasses, which can be explored for AA specificity and AD functionality, and shed light on the non-linear properties of ADs.
(via Semantic Scholar)
Source: ORCID
Added: January 25, 2024
2023 journal article
Foliar endophyte diversity in Eastern Asian-Eastern North American disjunct tree species - influences of host identity, environment, phylogeny, and geographic isolation
FRONTIERS IN PLANT SCIENCE, 14.
author keywords: allopatric divergence; Cornus; comparative analyses; foliar endophytic community; fungal ITS; bacterial 16S rDNA; phylogeny; alpha and beta diversity
TL;DR:
It is suggested that the sister taxa in EA and ENA likely differ in FEF and FEB when growing in native habitats due to differences in local environments, which may potentially drive allopatric divergence of the functional features of species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: January 16, 2024
2023 article
Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization
Parnell, J. J., Vintila, S., Tang, C., Wagner, M. R., & Kleiner, M. (2023, December 12). (K. L. Hockett, Ed.). MICROBIOLOGY SPECTRUM, Vol. 12.
Ed(s): K. Hockett
author keywords: Synthetic communities; maize; root colonization; plant-microbe interactions; plant microbiome; SynCom
TL;DR:
Comparing the reproducibility, stability, and colonization ability of freshly prepared versus frozen SynCom inocula shows that ready-to-use SynCom stocks provide comparable results to those of freshly constructed SynCom and thus allow for significant time savings when working with SynComs.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: January 16, 2024
2023 journal article
SEGS-1 a cassava genomic sequence increases the severity of African cassava mosaic virus infection in <i>Arabidopsis</i> thaliana
FRONTIERS IN PLANT SCIENCE, 14.
author keywords: SEGS-1; begomovirus; ACMV; Arabidopsis thaliana; cassava
TL;DR:
It is demonstrated that SEGS-1 can function in a heterologous host to increase disease severity in Arabidopsis thaliana plants that are co-inoculated with African cassava mosaic virus (ACMV) and SEGs-1 sequences.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: January 2, 2024
2023 journal article
Manipulating the plant mycobiome to enhance resilience: Ecological and evolutionary opportunities and challenges
PLOS PATHOGENS, 19(12).
Source: Web Of Science
Added: January 2, 2024
2023 article
Obituary Philip N. Benfey (1953-2023)
Bennett, M. J., Brady, S. M., Dinneny, J. R., Helariutta, Y., & Sozzani, R. (2023, November 20). DEVELOPMENTAL CELL, Vol. 58, pp. 2413–2415.
Sources: Web Of Science, ORCID
Added: January 2, 2024
2023 article
Testing the Effectiveness of a Commercially Sold Probiotic on Restoring the Gut Microbiota of Honey Bees: a Field Study
Damico, M. E., Beasley, B., Greenstein, D., & Raymann, K. (2023, December 19). PROBIOTICS AND ANTIMICROBIAL PROTEINS.
author keywords: Honey bees; Probiotics; Regulation; Antibiotics; Microbiome; Bacteria; Oxytetracycline
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: Web Of Science
Added: January 2, 2024
2023 article
RAD-seq data provide new insights into biogeography, diversity anomaly, and species delimitation in eastern Asian-North American disjunct clade <i>Benthamidia</i> of <i>Cornus</i> (Cornaceae)
Du, Z.-Y., Cheng, J., & Xiang, Q.-Y. (2023, December 13). JOURNAL OF SYSTEMATICS AND EVOLUTION, Vol. 12.
author keywords: Benthamidia clade; biogeography; Cornus; niche similarity; phylogenomics
TL;DR:
Increased diversification rate in EA is suggested as an intrinsic factor explaining the greater species diversity in the region driven mainly by biogeographic isolation and partially by niche divergence.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: January 2, 2024
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