Plant Biology - 2016

Xie, D.-Y. (2016). Metabolic Network Based Regulation of Artemisinin Biosynthesis for Anti-malarial Medicine. In Vitro Cellular & Developmental Biology - Plant, 52(Supplement), S24.

Vila-Parrish, A., Baldwin, T., Battestilli., L., Queen, H., Schmidt, J., & Carson, S. (2016, June 26). TH!NK: A Framework to Assess and Support Critical and Creative Thinking. Presented at the American Society for Engineering Education Annual Conference and Exposition, New Orleans, LA.

Burkholder, J. A. (2016). Marine Benthic Dinoflagellates—Unveiling Their Worldwide Biodiversity. Kleine Senckenberg-Reihe, Volume 54. By Mona Hoppenrath, Shauna A. Murray, Nicolas Chomérat, and Takeo Horiguchi. Stuttgart (Germany): E. Schweizerbart’sche Verlagsbuchhandlung. 19.90€ (paper). 276 p.; ill.; taxonomic index. ISBN: 978-3-510-61402-8. 2014. [Review of Marine Benthic Dinoflagellates—Unveiling Their Worldwide Biodiversity, by M. Hoppenrath, S. A. Murray, N. Chomerat, & T. Horiguchi]. The Quarterly Review of Biology, 91(4), 518–518. https://doi.org/10.1086/689525

Cooper, A. W., & Wentworth, T. R. (2016). Ernest Davis Seneca 1937-2015. The Bulletin of the Ecological Society of America, 97(2), 148–149. https://doi.org/10.1002/BES2.1222

Xi, J., Rossi, L., Lin, X., & Xie, D.-Y. (2016). Overexpression of a synthetic insect–plant geranyl pyrophosphate synthase gene in Camelina sativa alters plant growth and terpene biosynthesis. Planta, 244(1), 215–230. https://doi.org/10.1007/S00425-016-2504-8

Ott, L., & Carson, S. (2016). Who Scared the Cat? A Molecular Crime Scene Investigation Laboratory Exercise. Journal of Microbiology & Biology Education, 17(3), 451–457. https://doi.org/10.1128/jmbe.v17i3.1122

Abraham, J., Bousquet, A.-C., Bruff, E., Carson, N., Clark, A., Connell, A., … Miller, E. S. (2016). Paenibacillus larvae
                    Phage Tripp Genome Has 378-Base-Pair Terminal Repeats. Genome Announcements, 4(1). https://doi.org/10.1128/genomeA.01498-15

Krings, A., Howell, N., & Braham, R. (2016). Guide to the littoral zone vascular flora of Carolina bay lakes (U.S.A.). Biodiversity Data Journal, 4, e7964–1. https://doi.org/10.3897/BDJ.4.e7964

Clark, R. K., Krings, A., Stucky, J. M., & Kleiss, H. J. (2016). Guide to the vascular flora of Kitty Hawk Woods (Dare County, North Carolina, U.S.A.). Fort Worth, Texas: Botanical Research Institute of Texas Press.

Pais, A. L., Whetten, R. W., & Xiang, Q.-Y. J. (2016). Ecological genomics of local adaptation in Cornus florida L. by genotyping by sequencing. Ecology and Evolution, 7(1), 441–465. https://doi.org/10.1002/ece3.2623

Wear, E. E., Concia, L., Brooks, A. M., Markham, E. A., Lee, T.-J., Allen, G. C., … Hanley-Bowdoin, L. (2016). Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry. In Methods in Molecular Biology (pp. 69–86). https://doi.org/10.1007/978-1-4939-3142-2_6

Sheth, S. N., & Angert, A. L. (2016). Artificial selection reveals high genetic variation in phenology at the trailing edge of a species range. American Naturalist, 187(2), 182–193. https://doi.org/10.1086/684440

Ma, Q., Liu, X., Franks, R. G., & Xiang, Q.-Y. J. (2016). Alterations of CorTFL1 and CorAP1 expression correlate with major evolutionary shifts of inflorescence architecture in Cornus (Cornaceae) - a proposed model for variation of closed inflorescence forms. New Phytologist, 216(2), 519–535. https://doi.org/10.1111/nph.14197

Xiang, Q. Y. (2016). Helwingiaceae. In K. K. (Ed.), The Families and Genera of Vascular Plants: Vol. XIV (pp. 213–216). https://doi.org/10.1007/978-3-319-28534-4_18

Xiang, Q. Y. (2016). Aucubaceae. In K. J. W. & V. Bitterich (Eds.), The Families and Genera of Vascular Plants: Vol. XIV (pp. 37–40). https://doi.org/10.1007/978-3-319-28534-4_4

Tucker, M. B., MacKenzie, S. H., Maciag, J. J., Ackerman, H. D., Swartz, P., Yoder, J. A., … Clark, A. C. (2016). Phage display and structural studies reveal plasticity in substrate specificity of caspase-3a from zebrafish. Protein Science, 8(11), 2076–2088. https://doi.org/10.1002/pro.3032

Gong, X., Flores-Vergara, M. A., Hong, J. H., Chu, H., Lim, J., Franks, R. G., … Xu, J. (2016). SEUSS integrates gibberellin signaling with transcriptional inputs from the SHR-SCR-SCL3 module to regulate middle cortex formation in the Arabidopsis root. Plant Physiology. Retrieved from http://europepmc.org/abstract/med/26818732

Liu, X., Zhang, J., Abuahmad, A., Franks, R. G., Xie, D. Y., Xiang, Q. Y., & Planta. (2016). Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering. Retrieved from http://europepmc.org/abstract/med/26825444

Alvarez, A. A., Han, S. W., Toyota, M., Brillada, C., Zheng, J., Gilroy, S., & Rojas-Pierce, M. (2016). Wortmannin-induced vacuole fusion enhances amyloplast dynamics in Arabidopsis zigzag1 hypocotyls. JOURNAL OF EXPERIMENTAL BOTANY, 67(22), 6459–6472. https://doi.org/10.1093/jxb/erw418

Franks, R. G. (2016). Histological Analysis of the Arabidopsis Gynoecium and Ovules Using Chloral Hydrate Clearing and Differential Interference Contrast Light Microscopy. OOGENESIS: METHODS AND PROTOCOLS, Vol. 1457, pp. 1–7. https://doi.org/10.1007/978-1-4939-3795-0_1

Mowat, F. M., Hash, J., Mzyk, P., Harned, J., Nagar, S., & McGahan, M. C. (2016). Evaluation of the proliferative capacity of canine retinal pigment epithelial cells harvested from different regions of the fundus. Investigative Ophthalmology and Visual Science, 57(12).

Somalinga, V., Buhrman, G., Arun, A., Rose, R. B., & Grunden, A. M. (2016). A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface. PLOS ONE, 11(12). https://doi.org/10.1371/journal.pone.0168022

Long, H., Li, J., Li, Y.-Y., Xie, D.-Y., Peng, Q.-Z., & Li, L. (2016). Ontogenetic characterization of sporangium and spore of Huperzia serrata: an anti-aging disease fern. BOTANICAL STUDIES, 57(1). https://doi.org/10.1186/s40529-016-0151-9

Rossi, L., Borghi, M., Francini, A., Lin, X., Xie, D.-Y., & Sebastiani, L. (2016). Salt stress induces differential regulation of the phenylpropanoid pathway in Olea europaea cultivars Frantoio (salt-tolerant) and Leccino (salt-sensitive). Journal of Plant Physiology, 204, 8–15. https://doi.org/10.1016/j.jplph.2016.07.014

Jones, Z. G., & Goodman, M. M. (2016). Susceptibility of Dent-Sterile Popcorn to the Ga1-m Gametophyte Factor. CROP SCIENCE, 56(5), 2594–2599. https://doi.org/10.2135/cropsci2016.02.0101

de Luis Balaguer, M. A., Ramos-Pezzotti, M., Rahhal, M. B., Melvin, C. E., Johannes, E., Horn, T. J., & Sozzani, R. (2016). Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1. Developmental Biology, 419(1), 19–25. https://doi.org/10.1016/j.ydbio.2016.05.029

Mickelson-Young, L., Wear, E., Mulvaney, P., Lee, T.-J., Szymanski, E. S., Allen, G., … Thompson, W. (2016). A flow cytometric method for estimating S-phase duration in plants. JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087. https://doi.org/10.1093/jxb/erw367

Rose, E. T., Simons, T. R., Klein, R., & McKerrow, A. J. (2016). Normalized burn ratios link fire severity with patterns of avian occurrence. LANDSCAPE ECOLOGY, 31(7), 1537–1550. https://doi.org/10.1007/s10980-015-0334-x

Slattery, R. A., Grennan, A. K., Sivaguru, M., Sozzani, R., & Ort, D. R. (2016). Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves. JOURNAL OF EXPERIMENTAL BOTANY, 67(15), 4697–4709. https://doi.org/10.1093/jxb/erw246

Matthiadis, A., & Long, T. A. (2016). Further insight into BRUTUS domain composition and functionality. PLANT SIGNALING & BEHAVIOR, 11(8). https://doi.org/10.1080/15592324.2016.1204508

Xie, D.-Y., Ma, D.-M., Judd, R., & Jones, A. L. (2016, December). Artemisinin biosynthesis in Artemisia annua and metabolic engineering: questions, challenges, and perspectives. PHYTOCHEMISTRY REVIEWS, Vol. 15, pp. 1093–1114. https://doi.org/10.1007/s11101-016-9480-2

Marchin, R. M., Broadhead, A. A., Bostic, L. E., Dunn, R. R., & Hoffmann, W. A. (2016). Stomatal acclimation to vapour pressure deficit doubles transpiration of small tree seedlings with warming. PLANT CELL AND ENVIRONMENT, 39(10), 2221–2234. https://doi.org/10.1111/pce.12790

Just, M. G., Hohmann, M. G., & Hoffmann, W. A. (2016). Where fire stops: vegetation structure and microclimate influence fire spread along an ecotonal gradient. PLANT ECOLOGY, 217(6), 631–644. https://doi.org/10.1007/s11258-015-0545-x

Noar, R. D., & Daub, M. E. (2016). Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes. BMC GENOMICS, 17. https://doi.org/10.1186/s12864-016-3031-5

Clark, N. M., Hinde, E., Winter, C. M., Fisher, A. P., Crosti, G., Blilou, I., … Sozzani, R. (2016). Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy. Elife, 5.

Dalal, J., Lewis, D. R., Tietz, O., Brown, E. M., Brown, C. S., Palme, K., … Sederoff, H. W. (2016). ROSY1, a novel regulator of gravitropic response is a stigmasterol binding protein. JOURNAL OF PLANT PHYSIOLOGY, 196-197, 28–40. https://doi.org/10.1016/j.jplph.2016.03.011

Gobler, C. J., Burkholder, J. A. M., Davis, T. W., Harke, M. J., Johengen, T., Stow, C. A., & Waal, D. B. (2016). [Review of The dual role of nitrogen supply in controlling the growth and toxicity of cyanobacterial blooms]. HARMFUL ALGAE, 54, 87–97. https://doi.org/10.1016/j.hal.2016.01.010

Overexpression of a synthetic insect-plant geranyl pyrophosphate synthase gene in Camelina sativa alters plant growth and terpene biosynthesis. (2016). Planta, 244(1), 215–230.

Lu, J., Zhang, L., Lewis, R. S., Bovet, L., Goepfert, S., Jack, A. M., … Dewey, R. E. (2016). Expression of a constitutively active nitrate reductase variant in tobacco reduces tobacco-specific nitrosamine accumulation in cured leaves and cigarette smoke. PLANT BIOTECHNOLOGY JOURNAL, 14(7), 1500–1510. https://doi.org/10.1111/pbi.12510

Mitra, A., Flynn, K. J., Tillmann, U., Raven, J. A., Caron, D., Stoecker, D. K., … Lundgren, V. (2016). Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition: Incorporation of Diverse Mixotrophic Strategies. Protist, 167(2), 106–120. https://doi.org/10.1016/J.PROTIS.2016.01.003

Ndunguru, J., De Leon, L., Doyle, C. D., Sseruwagi, P., Plata, G., Legg, J. P., … Hanley-Bowdoin, L. (2016). Two Novel DNAs That Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease. JOURNAL OF VIROLOGY, 90(8), 4160–4173. https://doi.org/10.1128/jvi.02834-15

Villarino, G. H., Hu, Q., Manrique, S., Flores-Vergara, M., Sehra, B., Robles, L., … Franks, R. G. (2016). Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. PLANT PHYSIOLOGY, 171(1), 42–61. https://doi.org/10.1104/pp.15.01845

Gong, X., Flores-Vergara, M. A., Hong, J. H., Chu, H., Lim, J., Franks, R. G., … physiology, P. (2016). SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. PLANT PHYSIOLOGY, 170(3), 1675–1683. https://doi.org/10.1104/pp.15.01501

Jones, Z. G., Goodman, M. M., & Krakowsky, M. D. (2016). Identification of maize-derived dominant gametophyte factors. EUPHYTICA, 209(1), 63–69. https://doi.org/10.1007/s10681-016-1635-0

Touchell, D. H., Ranney, T. G., Panthee, D. R., Gehl, R. J., & Krings, A. (2016). Genetic diversity, cytogenetics, and biomass yields among taxa of giant reeds (Arundo species). Journal of the American Society for Horticultural Science, 141(3), 256–263.

Noar, R. D., & Daub, M. E. (2016). Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella fijiensis. PLOS ONE, 11(7). https://doi.org/10.1371/journal.pone.0158471

Harris, A. J., Fu, C., Xiang, Q.-Y. (J., Holland, L. R., & Wen, J. (2016). Testing the monophyly of Aesculus L. and Billia Peyr., woody genera of tribe Hippocastaneae of the Sapindaceae. Molecular Phylogenetics and Evolution, 102, 145–151. https://doi.org/10.1016/j.ympev.2016.06.001

Oneal, E., Willis, J. H., & Franks, R. G. (2016). Disruption of endosperm development is a major cause of hybrid seed inviability between Mimulus guttatus and Mimulus nudatus. NEW PHYTOLOGIST, 210(3), 1107–1120. https://doi.org/10.1111/nph.13842

Liu, X., Zhang, J., Abuahmad, A., Franks, R. G., Xie, D.-Y., & Xiang, Q.-Y. (2016). Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering. Planta, 243(5), 1129–1141. https://doi.org/10.1007/s00425-016-2466-x

Chaffin, A. S., Huang, Y.-F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., … Tinker, N. A. (2016). A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement. PLANT GENOME, 9(2). https://doi.org/10.3835/plantgenome2015.10.0102

Glibert, P. M., Wilkerson, F. P., Dugdale, R. C., Raven, J. A., Dupont, C. L., Leavitt, P. R., … Kana, T. M. (2016). Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen-enriched conditions. LIMNOLOGY AND OCEANOGRAPHY, 61(1), 165–197. https://doi.org/10.1002/lno.10203

Gremiaux, A., Girard, S., Guerin, V., Lothier, J., Baluska, F., Davies, E., … Vian, A. (2016). Low-amplitude, high-frequency electromagnetic field exposure causes delayed and reduced growth in Rosa hybrida. JOURNAL OF PLANT PHYSIOLOGY, 190, 44–53. https://doi.org/10.1016/j.jplph.2015.11.004

Lennon, J. R., Krakowsky, M., Goodman, M., Flint-Garcia, S., & Balint-Kurti, P. J. (2016). Identification of Alleles Conferring Resistance to Gray Leaf Spot in Maize Derived from its Wild Progenitor Species Teosinte. CROP SCIENCE, 56(1), 209–218. https://doi.org/10.2135/cropsci2014.07.0468

Nelson, P. T., Krakowsky, M. D., Coles, N. D., Holland, J. B., Bubeck, D. M., Smith, J. S. C., & Goodman, M. M. (2016). Genetic Characterization of the North Carolina State University Maize Lines. CROP SCIENCE, 56(1), 259–275. https://doi.org/10.2135/cropsci2015.09.0532

Jacobi, J. L., Yang, B., Li, X., Menze, A. K., Laurentz, S. M., Janle, E. M., … al. (2016). Impacts on Sirtuin Function and Bioavailability of the Dietary Bioactive Compound Dihydrocoumarin. PLOS ONE, 11(2). https://doi.org/10.1371/journal.pone.0149207

Geng, X.-M., Liu, X., Ji, M., Hoffmann, W. A., Grunden, A., & Xiang, Q.-Y. J. (2016). Enhancing Heat Tolerance of the Little Dogwood Cornus canadensis L. f. with Introduction of a Superoxide Reductase Gene from the Hyperthermophilic Archaeon Pyrococcus furiosus. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.00026

Xie, D.-Y. (2016, January). Artemisia annua, artemisinin, and the Nobel Prize: beauty of natural products and educational significance. SCIENCE BULLETIN, Vol. 61, pp. 42–44. https://doi.org/10.1007/s11434-015-0989-3

Borghi, M., & Xie, D.-Y. (2016). Tissue-specific production of limonene in Camelina sativa with the Arabidopsis promoters of genes BANYULS and FRUITFULL. PLANTA, 243(2), 549–561. https://doi.org/10.1007/s00425-015-2425-y

Pellegrini, A. F. A., Franco, A. C., & Hoffmann, W. A. (2016). Shifts in functional traits elevate risk of fire-driven tree dieback in tropical savanna and forest biomes. GLOBAL CHANGE BIOLOGY, 22(3), 1235–1243. https://doi.org/10.1111/gcb.13110

Vian, A., Davies, E., Gendraud, M., & Bonnet, P. (2016). [Review of Plant Responses to High Frequency Electromagnetic Fields]. BIOMED RESEARCH INTERNATIONAL, 2016. https://doi.org/10.1155/2016/1830262

Call, A., Sun, Y.-X., Yu, Y., Pearman, P. B., Thomas, D. T., Trigiano, R. N., … Xiang, Q.-Y. J. (2016). Genetic structure and post-glacial expansion of Cornus florida L. (Cornaceae): integrative evidence from phylogeography, population demographic history, and species distribution modeling. Journal of Systematics and Evolution, 54(2), 136–151. https://doi.org/10.1111/jse.12171

Fisher, A. P., & Sozzani, R. (2016). Gene and networks regulating the root stem cell niche of Arabidopsis. Curr Opin Plant Biol, 29, 38–43. https://doi.org/10.1016/j.pbi.2015.11.002

Womble, M., Pickett, M., & Nascone-Yoder, N. (2016). [Review of Frogs as integrative models for understanding digestive organ development and evolution]. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 51, 92–105. https://doi.org/10.1016/j.semcdb.2016.02.001

Franco-Navarro, J. D., Brumos, J., Rosales, M. A., Cubero-Font, P., Talon, M., & Colmenero-Flores, J. M. (2016). Chloride regulates leaf cell size and water relations in tobacco plants. JOURNAL OF EXPERIMENTAL BOTANY, 67(3), 873–891. https://doi.org/10.1093/jxb/erv502

Morris, H., Plavcova, L., Cvecko, P., Fichtler, E., Gillingham, M. A. F., Martinez-Cabrera, H. I., … Jansen, S. (2016). A global analysis of parenchyma tissue fractions in secondary xylem of seed plants. NEW PHYTOLOGIST, 209(4), 1553–1565. https://doi.org/10.1111/nph.13737

La Hovary, C., Danehower, D. A., Ma, G., Reberg-Horton, C., Williamson, J. D., Baerson, S. R., & Burton, J. D. (2016). Phytotoxicity and Benzoxazinone Concentration in Field Grown Cereal Rye (Secale cereale L.). INTERNATIONAL JOURNAL OF AGRONOMY, 2016. https://doi.org/10.1155/2016/6463826