Works Published in 2006

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Displaying works 21 - 40 of 157 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2006 report

Waste Not, Want Not: Adaptive Garbage Collection in a Shared Environment

(Technical Report No. TR908). Computer Science Dept., University of Rochester.

By: C. Zhang, K. Kelsey, X. Shen, C. Ding, M. Hertz & M. Ogihara

Source: NC State University Libraries
Added: January 30, 2021

2006 report

Behavior-Oriented Parallelization

(Technical Report No. TR904). Computer Science Dept., University of Rochester.

By: B. Parallelization”, C. Ding, X. Shen, K. Kelsey, C. Tice, R. Huang, C. Zhang

Source: NC State University Libraries
Added: January 30, 2021

2006 report

Accurate Approximation of Locality from Time Distance Histograms

(Technical Report No. TR902). Computer Science Dept., University of Rochester.

By: X. Shen, J. Shaw & B. Meeker

Source: NC State University Libraries
Added: January 30, 2021

2006 report

Locality Approximation Using Time

(Technical Report No. TR901). Computer Science Dept., University of Rochester.

By: X. Shen, J. Shaw, B. Meeker & C. Ding

Source: NC State University Libraries
Added: January 30, 2021

2006 conference paper

Stevens dot patterns for 2D flow visualization

Proceedings of the 3rd symposium on Applied perception in graphics and visualization - APGV '06. Presented at the the 3rd symposium.

By: L. Tateosian n, B. Dennis n & C. Healey n

Event: the 3rd symposium

TL;DR: A new technique to visualize 2D flow fields with a sparse collection of dots by integrating a cognitive model into a visualization algorithm that converts a sparse grid of dots into patterns that capture flow orientations in an underlying flow field. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: December 11, 2020

2006 chapter

Burst Loss Probabilities in an OBS Network with Dynamic Simultaneous Link Possession

In Advances in Computer Science and Engineering: Texts (pp. 205–225).

By: T. Battestilli n & H. Perros n

Sources: Crossref, ORCID
Added: September 13, 2020

2006 chapter

Grid Networks and Layer 1 Services

In Grid Networks (pp. 217–252).

By: G. Karmous-Edwards*, J. Mambretti*, D. Simeonidou*, A. Jukan*, T. Battestilli*, H. Perros n, Y. Xin*, J. Strand*

Sources: Crossref, ORCID
Added: September 13, 2020

2006 chapter

UMN-MapServer: A High-Performance, Interoperable, and Open Source Web Mapping and Geo-spatial Analysis System

In Geographic Information Science (pp. 400–417).

By: R. Vatsavai*, S. Shekhar*, T. Burk* & S. Lime*

TL;DR: This paper presents a load balancing client/server Web-based spatial analysis system, UMN-MapServer, and evaluates its performance in a regional natural resource mapping and analysis (NRAMS) application which utilizes biweekly AVHRR imagery and several other raster and vector geo-spatial datasets. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 10, 2020

2006 chapter

Improving DB2 Performance Expert – A Generic Analysis Framework

In Lecture Notes in Computer Science (pp. 1097–1101).

By: L. Mignet*, J. Basak*, M. Bhide*, P. Roy*, S. Roy*, V. Sengar*, R. Vatsavai*, M. Reichert* ...

TL;DR: This paper describes a component which is capable of doing early performance problem detection by analyzing the sensor values over a long period of time and showcases a trends plotter and workload characterizer which allows a DBA to have a better understanding of the resource usages. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 10, 2020

2006 conference paper

Program-level adaptive memory management

Proceedings of the 2006 international symposium on Memory management - ISMM '06. Presented at the the 2006 international symposium.

By: C. Zhang*, K. Kelsey*, X. Shen*, C. Ding*, M. Hertz* & M. Ogihara*

Event: the 2006 international symposium

TL;DR: This work demonstrates the presence of an optimal heap size for a number of applications and introduces a scheme which adaptively finds this good heap size by adapting itself dynamically, independent of the underlying main memory size, code optimizations, and garbage collection algorithm. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 6, 2020

2006 journal article

Just enough learning (of association rules): the TAR2 “Treatment” learner

Artificial Intelligence Review, 25(3), 211–229.

By: T. Menzies* & Y. Hu*

author keywords: TAR2; treatment learning; contrast set learning
TL;DR: A much simpler learner can suffice in domains with narrow funnels; i.e. where most domain variables are controlled by a very small subset; such a learner is TAR2: a weighted-class minimal contrast-set association rule learner that utilizes confidence-based pruning, but not support- based pruning. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: August 28, 2020

2006 chapter

Toward Legal Argument Instruction with Graph Grammars and Collaborative Filtering Techniques

In Intelligent Tutoring Systems (pp. 227–236).

By: N. Pinkwart*, V. Aleven*, K. Ashley* & C. Lynch*

TL;DR: Students study transcripts of US Supreme Court oral argument and create a graphical representation of argument flow as tests offered by attorneys being challenged by hypotheticals posed by Justices, thereby avoiding the critical problem of natural language processing in legal argumentation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
4. Quality Education (OpenAlex)
Source: Crossref
Added: August 28, 2020

2006 chapter

Privacy Preserving Web-Based Email

In Information Systems Security (pp. 116–131).

Event: Springer Berlin Heidelberg

TL;DR: This paper creates virtual channels over online services (e.g., Google's Gmail, Microsoft's Hotmail) through which messages and cryptographic keys are delivered and creates a wired “spread-spectrum” mechanism for protecting the privacy of web-based communication. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: August 28, 2020

2006 chapter

Password Exhaustion: Predicting the End of Password Usefulness

In Information Systems Security (pp. 37–55).

By: L. Clair*, L. Johansen*, W. Enck*, M. Pirretti*, P. Traynor*, P. McDaniel*, T. Jaeger*

TL;DR: An analytical model for computation is developed to understand the time required to recover random passwords and concludes that past systems vulnerable to offline attacks will be obsolete in 5-15 years and a large number of these systems are already obsolete. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: August 28, 2020

2006 journal article

Gene network shaping of inherent noise spectra

Nature, 439(7076), 608–611.

By: D. Austin*, M. Allen*, J. McCollum*, R. Dar, J. Wilgus, G. Sayler*, N. Samatova*, C. Cox*, M. Simpson*

MeSH headings : Algorithms; Computer Simulation; Escherichia coli / cytology; Escherichia coli / genetics; Escherichia coli / growth & development; Escherichia coli Proteins / genetics; Gene Expression Regulation, Bacterial; Genes, Bacterial / genetics; Half-Life; Microscopy, Fluorescence; Models, Genetic; Regulatory Sequences, Nucleic Acid / genetics; Stochastic Processes
TL;DR: Noise spectral measurements provide mechanistic insights into gene regulation, as perturbations of gene circuit parameters are discernible in the measured noise frequency ranges, and suggest that noise spectral measurements could facilitate the discovery of novel regulatory relationships. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2006 journal article

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Journal of Proteome Research, 5(11), 2909–2918.

By: B. Zhang*, N. VerBerkmoes*, M. Langston*, E. Uberbacher*, R. Hettich* & N. Samatova*

author keywords: label-free; LC-MS/MS; shotgun proteomics; differential expression; correlated expression; clustering; Saccharomyces cerevisiae; Rhodopseudomonas palustris
MeSH headings : Bacterial Proteins / genetics; Chromatography, Liquid; Gene Expression; Mass Spectrometry; Proteins / chemistry; Proteins / genetics; Proteins / isolation & purification; Proteomics / methods; Reproducibility of Results; Rhodopseudomonas / genetics
TL;DR: A systematic analysis of various approaches to quantifying differential protein expression in eukaryotic Saccharomyces cerevisiae and prokaryotic Rhodopseudomonas palustris label-free LC-MS/MS data demonstrated that proteins co-located in the same operon were much more strongly coexpressed than those from different operons. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2006 journal article

Robust Estimation of Peptide Abundance Ratios and Rigorous Scoring of Their Variability and Bias in Quantitative Shotgun Proteomics

Analytical Chemistry, 78(20), 7110–7120.

MeSH headings : Algorithms; Amino Acid Sequence; Bias; Chromatography; Hot Temperature; Ions; Molecular Sequence Data; Peptides / analysis; Peptides / chemistry; Proteomics / methods; Reproducibility of Results; Rhodopseudomonas; Tandem Mass Spectrometry
TL;DR: It is demonstrated that the profile signal-to-noise ratio is inversely correlated with the variability and bias of peptide abundance ratio estimation, and rigorously scored each abundance ratio for the expected estimation bias and variability. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2006 journal article

ProRata:  A Quantitative Proteomics Program for Accurate Protein Abundance Ratio Estimation with Confidence Interval Evaluation

Analytical Chemistry, 78(20), 7121–7131.

By: C. Pan*, G. Kora*, W. McDonald*, D. Tabb*, N. VerBerkmoes*, G. Hurst*, D. Pelletier*, N. Samatova*, R. Hettich*

MeSH headings : Algorithms; Bacterial Proteins / analysis; Bias; Confidence Intervals; Hot Temperature; Proteome; Proteomics / methods; Rhodopseudomonas; Software; Software Design
TL;DR: A profile likelihood algorithm is proposed for quantitative shotgun proteomics to infer the abundance ratio of proteins from the abundance ratios of isotopically labeled peptides derived from proteolysis and yields maximum likelihood point estimation and profile likelihood confidence interval estimation of protein abundance ratios. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2006 journal article

The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

Computational Biology and Chemistry, 30(1), 39–49.

author keywords: stochastic simulation; modeling biochemical systems; Gillespie algorithm; gene networks; systems biology
MeSH headings : Algorithms; Aliivibrio fischeri / chemistry; Escherichia coli / chemistry; Models, Chemical; Stochastic Processes; Systems Biology / methods
TL;DR: This work examines the performance of different versions of Gillespie's stochastic simulation algorithm when applied to several biochemical models and proposes a new algorithm called the sorting direct method that maintains a loosely sorted order of the reactions as the simulation executes. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

2006 chapter

“What Would You Like to Talk About?” An Evaluation of Social Conversations with a Virtual Receptionist

In Intelligent Virtual Agents (pp. 169–180).

By: S. Babu*, S. Schmugge*, T. Barnes* & L. Hodges*

TL;DR: Investigating the relative popularity of Marve's social conversational capabilities and his role-specific messaging tasks, as well as his perceived social characteristics, indicates that users are interested in interacting with Marve, use social Conversational conventions withMarve, and perceive and describe him as a social entity. (via Semantic Scholar)
Source: Crossref
Added: August 28, 2020

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