Molecular and Structural Biochemistry - 2003

Chapman, L. D., Hasnah, M. O., Oltulu, O., Zhong, Z., Mollenhauer, J. M., C., K., … Sayers, D. (2003). Diffraction enhanced x-ray imaging of articular cartilage. Washington, DC: U.S. Patent and Trademark Office.

Grichko, V. P., Sisler, E. C., & Serek, M. (2003). Anti-ethylene properties of monoterpenes and some other naturally occurring compound in plants. New, 16, 20.

Otvos, J. (2003). Methods, systems, and computer program products for analyzing and presenting NMR lipoprotein-based risk assessment results. Washington, DC: U.S. Patent and Trademark Office.

Otvos, J. (2003). Methods for providing personalized lipoprotein-based risk assessments. Washington, DC: U.S. Patent and Trademark Office.

Otvos, J., Jeyarajah, E., & Shalaurova, I. (2003). Method of determining presence and concentration of lipoprotein X in blood plasma and serum. Washington, DC: U.S. Patent and Trademark Office.

Chen, Y. R., & Clark, A. C. (2003). Equilibrium and kinetic folding of a alpha-helical Greek key protein domain: Caspase recruitment domain (CARD) of RICK. BIOCHEMISTRY, 42(20), 6310–6320. https://doi.org/10.1021/bi0340752

Hernandez, R., Sinodis, C., Horton, M., Ferreira, D., Yang, C. N., & Brown, D. T. (2003). Deletions in the transmembrane domain of a Sindbis virus glycoprotein alter virus infectivity, stability, and host range. JOURNAL OF VIROLOGY, 77(23), 12710–12719. https://doi.org/10.1128/JVI.77.23.12710-12719.2003

Zhang, Y., Brown, G., Whetten, R., Loopstra, C. A., Neale, D., Kieliszewski, M. J., & Sederoff, R. R. (2003). An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. PLANT MOLECULAR BIOLOGY, 52(1), 91–102. https://doi.org/10.1023/A:1023978210001

Sisler, E. C., Alwan, T., Goren, R., Serek, M., & Apelbaum, A. (2003). 1-substituted cyclopropenes: Effective blocking agents for ethylene action in plants. PLANT GROWTH REGULATION, 40(3), 223–228. https://doi.org/10.1023/A:1025080420990

Zyl, L., Bozhkov, P. V., Clapham, D. H., Sederoff, R. R., & Arnold, S. (2003). Up, down and up again is a signature global gene expression pattern at the beginning of gymnosperm embryogenesis. GENE EXPRESSION PATTERNS, 3(1), 83–91. https://doi.org/10.1016/S1567-133X(02)00068-6

Stasolla, C., Zyl, L., Egertsdotter, U., Craig, D., Liu, W. B., & Sederoff, R. R. (2003). Transcript profiles of stress-related genes in developing white spruce (Picea glauca) somatic embryos cultured with polyethylene glycol. PLANT SCIENCE, 165(4), 719–729. https://doi.org/10.1016/S0168-9452(03)00228-0

Venters, R. A., Benson, L. M., Craig, T. A., Paul, K. H., Kordys, D. R., Thompson, R., … Cavanagh, J. (2003). The effects of Ca2+ binding on the conformation of calbindin D-28K: A nuclear magnetic resonance and microelectrospray mass spectrometry study. ANALYTICAL BIOCHEMISTRY, 317(1), 59–66. https://doi.org/10.1016/S0003-2697(03)00084-8

Wang, J. J., Swaisgood, H. E., & Shih, J. C. H. (2003). Production and characterization of bio-immobilized keratinase in proteolysis and keratinolysis. ENZYME AND MICROBIAL TECHNOLOGY, 32(7), 812–819. https://doi.org/10.1016/S0141-0229(03)00060-7

Pernasetti, F., Spady, T. J., Hall, S. B., Rosenberg, S. B., Givens, M. L., Anderson, S., … Mellon, P. L. (2003). Pituitary tumorigenesis targeted by the ovine follicle-stimulating hormone beta-subunit gene regulatory region in transgenic mice. MOLECULAR AND CELLULAR ENDOCRINOLOGY, 203(1-2), 169–183. https://doi.org/10.1016/S0303-7207(02)00430-6

Otvos, J. D., & Bennett, D. W. (2003). Methods and computer program products for determining risk of developing type 2 diabetes and other insulin resistance related disorders. Washington, DC: U.S. Patent and Trademark Office.

Kirst, M., Johnson, A. F., Baucom, C., Ulrich, E., Hubbard, K., Staggs, R., … Sederoff, R. (2003). Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(12), 7383–7388. https://doi.org/10.1073/pnas.1132171100

Stasolla, C., Scott, J., Egertsdotter, U., Kadla, J., D O'Malley, Sederoff, R., & Zyl, L. (2003). Analysis of lignin produced by cinnamyl alcohol dehydrogenase-deficient Pinus taeda cultured cells. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 41(5), 439–445. https://doi.org/10.1016/S0981-9428(03)00051-2

Chen, C. L., Capanema, E. A., & Gracz, H. S. (2003). Reaction mechanisms in delignification of pine Kraft-AQ pulp with hydrogen peroxide using Mn(IV)-Me4DTNE as catalyst. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 51(7), 1932–1941. https://doi.org/10.1021/jf020992n

Batten, J. S., Yoshinari, S., & Hemenway, C. (2003). [Review of Potato virus X: a model system for virus replication, movement and gene expression]. MOLECULAR PLANT PATHOLOGY, 4(2), 125–131. https://doi.org/10.1046/j.1364-3703.2003.00156.x

Qian, W. J., Gosche, M. B., Camp, D. G., Yu, L. R., Tang, K. Q., & Smith, R. D. (2003). Phosphoprotein isotope-coded solid-phase tag approach for enrichment and quantitative analysis of phosphopeptides from complex mixtures. ANALYTICAL CHEMISTRY, 75(20), 5441–5450. https://doi.org/10.1021/ac0342774

Kim, H., Ralph, J., Lu, F. C., Ralph, S. A., Boudet, A. M., MacKay, J. J., … Higuchi, T. (2003). NMR analysis of lignins in CAD-deficient plants. Part 1. Incorporation of hydroxycinnamaldehydes and hydroxybenzaldehydes into lignins. ORGANIC & BIOMOLECULAR CHEMISTRY, 1(2), 268–281. https://doi.org/10.1039/b209686b

Ferreira, D., Hernandez, R., Horton, M., & Brown, D. T. (2003). Morphological variants of Sindbis virus produced by a mutation in the capsid protein. VIROLOGY, 307(1), 54–66. https://doi.org/10.1016/S0042-6822(02)00034-X

Fasina, Y. O., Classen, H. L., Garlich, J. D., Swaisgood, H. E., & Clare, D. A. (2003). Investigating the possibility of monitoring lectin levels in commercial soybean meals intended for poultry feeding using steam-heated soybean meal as a model. POULTRY SCIENCE, 82(4), 648–656. https://doi.org/10.1093/ps/82.4.648

Kuivenhoven, J. A., Hovingh, G. K., Tol, A., Jauhiainen, M., Ehnholm, C., Fruchart, J. C., … Kastelein, J. J. P. (2003). Heterozygosity for ABCA1 gene mutations: effects on enzymes, apolipoproteins and lipoprotein particle size. ATHEROSCLEROSIS, 171(2), 311–319. https://doi.org/10.1016/j.atherosclerosis.2003.08.014

Buhrman, G., Serrano, V., & Mattos, C. (2003). Organic solvents order the dynamic switch II in Ras crystals. STRUCTURE, 11(7), 747–751. https://doi.org/10.1016/s0969-2126(03)00128-x

Pop, C., Feeney, B., Tripathy, A., & Clark, A. C. (2003). Mutations in the procaspase-3 dimer interface affect the activity of the zymogen. BIOCHEMISTRY, 42(42), 12311–12320. https://doi.org/10.1021/bi034999p

Jenkins, A. J., Lyons, T. J., Zheng, D. Y., Otvos, J. D., Lackland, D. T., McGee, D., … Klein, R. L. (2003). Lipoproteins in the DCCT/EDIC cohort: Associations with diabetic nephropathy. KIDNEY INTERNATIONAL, 64(3), 817–828. https://doi.org/10.1046/j.1523-1755.2003.00164.x

Patzlaff, A., Newman, L. J., Dubos, C., Whetten, R., Smith, C., McInnis, S., … Campbell, M. M. (2003). Characterisation of PtMYB1, an R2R3-MYB from pine xylem. PLANT MOLECULAR BIOLOGY, 53(4), 597–608. https://doi.org/10.1023/B:PLAN.0000019066.07933.d6

Wang, J. J., Swaisgood, H. E., & Shih, J. C. H. (2003). Bioimmobilization of keratinase using Bacillus subtilis and Escherichia coli systems. BIOTECHNOLOGY AND BIOENGINEERING, 81(4), 421–429. https://doi.org/10.1002/bit.10485

Kojetin, D. J., Thompson, R. J., & Cavanagh, J. (2003). Sub-classification of response regulators using the surface characteristics of their receiver domains. FEBS LETTERS, 554(3), 231–236. https://doi.org/10.1016/S0014-5793(03)01167-0

Stuart, J. W., Koshlap, K. M., Guenther, R., & Agris, P. F. (2003). Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe). JOURNAL OF MOLECULAR BIOLOGY, 334(5), 901–918. https://doi.org/10.1016/j.jmb.2003.09.058

Noah, J. W., Shapkina, T. G., Nanda, K., Huggins, W., & Wollenzien, P. (2003). Conformational change in the 16S rRNA in the Escherichia coli 70S ribosome induced by P/P- and P/E-site tRNA(Phe) binding. BIOCHEMISTRY, 42(49), 14386–14396. https://doi.org/10.1021/bi035369q

Sisler, E. C., & Serek, M. (2003). Compounds interacting with the ethylene receptor in plants. Plant Biology (Stuttgart, Germany), 5(5), 473–480.

Patzlaff, A., McInnis, S., Courtenay, A., Surman, C., Newman, L. J., Smith, C., … Campbell, M. M. (2003). Characterisation of a pine MYB that regulates lignification. PLANT JOURNAL, 36(6), 743–754. https://doi.org/10.1046/j.1365-313X.2003.01916.x

Mucha, P., Szyk, A., Rekowski, P., & Agris, P. F. (2003). Using capillary electrophoresis to study methylation effect on RNA-peptide interaction. Acta Biochimica Polonica, 50(3), 857–864.

Jenkins, A. J., Lyons, T., Zheng, D. Y., Otvos, J. D., Lackland, D. T., McGee, D., … Klein, R. L. (2003). Serum lipoproteins in the diabetes control and complications trial/epidemiology of diabetes intervention and complications cohort - Associations with gender and glycemia. DIABETES CARE, 26(3), 810–818. https://doi.org/10.2337/diacare.26.3.810

Hulsmann, A., Rosche, T. M., Kong, I. S., Hassan, H. M., Beam, D. M., & Oliver, J. D. (2003). RpoS-dependent stress response and exoenzyme production in Vibrio vulnificus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 69(10), 6114–6120. https://doi.org/10.1128/AEM.69.10.6114-6120.2003

Andrus, J. M., Bowen, S. W., Klaenhammer, T. R., & Hassan, H. M. (2003). Molecular characterization and functional analysis of the manganese-containing superoxide dismutase gene (sodA) from Streptococcus thermophilus AO54. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 420(1), 103–113. https://doi.org/10.1016/j.abb.2003.09.007

Tran, E. J., Zhang, XX, & Maxwell, E. S. (2003). Efficient RNA 2 '-O-methylation requires juxtaposed and symmetrically assembled archaeal box C/D and C '/D ' RNPs. EMBO JOURNAL, 22(15), 3930–3940. https://doi.org/10.1093/emboj/cdg368

Kebenei, Z., Sisler, E. C., Winkelmann, T., & Serek, M. (2003). Efficacy of new inhibitors of ethylene perception in improvement of display life of kalanchoe (Kalanchoe blossfeldiana Poelln.) flowers. Postharvest Biology and Technology, 30(2), 169–176. https://doi.org/10.1016/S0925-5214(03000107-8

Kebenei, Z., Sisler, E. C., Winkelmann, T., & Serek, M. (2003). Effect of 1-octylcyclopropene and 1-methylcyclopropene on vase life of sweet pea (Lathyrus odoratus L.) flowers. JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 78(4), 433–436. https://doi.org/10.1080/14620316.2003.11511644

Myburg, A. A., Griffin, A. R., Sederoff, R. R., & Whetten, R. W. (2003). Comparative genetic linkage maps of Eucalyptus grandis, Eucalyptus globulus and their F-1 hybrid based on a double pseudo-backcross mapping approach. THEORETICAL AND APPLIED GENETICS, 107(6), 1028–1042. https://doi.org/10.1007/s00122-003-1347-4

Zhirnov, O. V., & Wollenzien, P. (2003). Action spectra for UV-light induced RNA-RNA crosslinking in 16S ribosomal RNA in the ribosome. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES, 2(6), 688–693. https://doi.org/10.1039/b208677h

Stasolla, C., Zyl, L., Egertsdotter, U., Craig, D., Liu, W. B., & Sederoff, R. R. (2003). The effects of polyethylene glycol on gene expression of developing white spruce somatic embryos. PLANT PHYSIOLOGY, 131(1), 49–60. https://doi.org/10.1104/pp.015214

Shen, W., Clark, A. C., & Huber, S. C. (2003). The C-terminal tail of Arabidopsis 14-3-3 omega functions as an autoinhibitor and may contain a tenth alpha-helix. PLANT JOURNAL, 34(4), 473–484. https://doi.org/10.1046/j.1365-313X.2003.01739.x

Beauchemin, S., Hesterberg, D., Chou, J., Beauchemin, M., Simard, R. R., & Sayers, D. E. (2003). Speciation of phosphorus in phosphorus-enriched agricultural soils using X-ray absorption near-edge structure spectroscopy and chemical fractionation. JOURNAL OF ENVIRONMENTAL QUALITY, 32(5), 1809–1819. https://doi.org/10.2134/jeq2003.1809

Wolak, J., Jia, X., Gracz, H., Stejskal, E. O., White, J. L., Wachowicz, M., & Jurga, S. (2003). Polyolefin miscibility: Solid-state NMR investigation of phase behavior in saturated hydrocarbon blends. MACROMOLECULES, 36(13), 4844–4850. https://doi.org/10.1021/ma0301449

Watkinson, J. I., Sioson, A. A., Vasquez-Robinet, C., Shukla, M., Kumar, D., Ellis, M., … Grene, R. (2003). Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine. Plant Physiology, 133(4), 1702–1716. https://doi.org/10.1104/pp.103026914

Merkel, T. C., Toy, L. G., Andrady, A. L., Gracz, H., & Stejskal, E. O. (2003). Investigation of enhanced free volume in nanosilica-filled poly(1-trimethylsilyl-1-propyne) by Xe-129 NMR spectroscopy. MACROMOLECULES, 36(2), 353–358. https://doi.org/10.1021/ma0256690

Balakshin, M. Y., Capanema, E. A., Chen, C. L., & Gracz, H. S. (2003). Elucidation of the structures of residual and dissolved pine kraft lignins using an HMQC NMR technique. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 51(21), 6116–6127. https://doi.org/10.1021/jf034372d

Chen, C. L., Capanema, E. A., & Gracz, H. S. (2003). Comparative studies on the delignification of pine kraft-anthraquinone pulp with hydrogen peroxide by binucleus Mn(IV) complex catalysis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 51(21), 6223–6232. https://doi.org/10.1021/jf034507f

Lutz, W., Frank, E. M., Craig, T. A., Thompson, R., Venters, R. A., Kojetin, D., … Kumar, R. (2003). Calbindin D-28K interacts with Ran-binding protein M: identification of interacting domains by NMR spectroscopy. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 303(4), 1186–1192. https://doi.org/10.1016/S0006-291X(03)00499-6

Fasina, Y. O., Swaisgood, H. E., Garlich, J. D., & Classen, H. L. (2003). A semi-pilot-scale procedure for isolating and purifying soybean (Glycine max) lectin. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 51(16), 4532–4538. https://doi.org/10.1021/jf021125l

Benson, L. M., Kumar, R., Cavanagh, J., & Naylor, S. (2003). Protein-metal ion interactions, stoichiometries and relative affinities determined by on-line size exclusion gel filtration mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 17(4), 267–271. https://doi.org/10.1002/rcm.903

Mitchell, T. K., Alejos-Gonzalez, F., Gracz, H. S., Danehower, D. A., Daub, M. E., & Chilton, W. S. (2003). Xanosporic acid, an intermediate in bacterial degradation of the fungal phototoxin cercosporin. PHYTOCHEMISTRY, 62(5), 723–732. https://doi.org/10.1016/S0031-9422(02)00517-4

Kiss, M. Z., Sayers, D. E., & Zhong, Z. (2003). Measurement of image contrast using diffraction enhanced imaging. Physics in Medicine & Biology, 48(3), 325–340.

Pillai-Nair, N., Kim, K. H., & Hemenway, C. (2003). Cis-acting regulatory elements in the potato virus X 3 ' non-translated region differentially affect minus-strand and plus-strand RNA accumulation. JOURNAL OF MOLECULAR BIOLOGY, 326(3), 701–720. https://doi.org/10.1016/S0022-2836(02)01369-4

Cavanagh, J., Benson, L. M., Thompson, R., & Naylor, S. (2003). In-line desalting mass spectrometry for the study of noncovalent biological complexes. ANALYTICAL CHEMISTRY, 75(14), 3281–3286. https://doi.org/10.1021/ac030182q

Bose, K., Pop, C., Feeney, B., & Clark, A. C. (2003). An uncleavable procaspase-3 mutant has a lower catalytic efficiency but an active site similar to that of mature caspase-3. BIOCHEMISTRY, 42(42), 12298–12310. https://doi.org/10.1021/bi034998x

Sasaki, T., & Sederoff, R. R. (2003, April). Genome studies and molecular genetics - The rice genome and comparative genomics of higher plants - Editorial overview. CURRENT OPINION IN PLANT BIOLOGY, Vol. 6, pp. 97–100. https://doi.org/10.1016/S1369-5266(03)00018-9

Passos, F. V., Fleming, H. P., Hassan, H. M., & McFeeters, R. F. (2003). Effect of malic acid on the growth kinetics of Lactobacillus plantarum. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 63(2), 207–211. https://doi.org/10.1007/s00253-003-1375-7

Clare, D. A., Catignani, G. L., & Swaisgood, H. E. (2003). [Review of Biodefense properties of milk: The role of antimicrobial proteins and peptides]. CURRENT PHARMACEUTICAL DESIGN, 9(16), 1239–1255. https://doi.org/10.2174/1381612033454874