Molecular and Structural Biochemistry - 2008

Teixeira, S. C. M., Zaccai, G., Ankner, J., Bellissent-Funel, M. C., Bewley, R., Blakeley, M. P., … Weiss, K. (2008). Erratum to “New sources and instrumentation for neutrons in biology” [Chem. Phys. 345 (2008) 133–151]. Chemical Physics, 351(1-3), 170. https://doi.org/10.1016/j.chemphys.2008.04.007

Blakeley, M. P., Ruiz, F., Cachau, R., Hazemann, I., Meilleur, F., Mitschler, A., … Podjarny, A. (2008). Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase. Proceedings of the National Academy of Sciences of the United States of America, 105(6), 1844–1848, https://doi.org/10.1073/pnas.0711659105

Smith, K. M., Nanda, K., Slominski, C. J., Hernandez, R., Brown, D. T., & Thomas, M. E. (2008). Construction and characterization of mutant Dengue2 virus vaccine candidates displaying a host-range phenotype. Vaccine.

Lusic, H., Gustilo, E. M., Vendeix, F. A. P., Kaiser, R., Delaney, M. O., Graham, W. D., … Deiters, A. (2008). Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met). NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557. https://doi.org/10.1093/nar/gkn703

Kreske, A. C., Bjornsdottir, K., Breidt, F., Jr., & Hassan, H. (2008). Effects of pH, Dissolved Oxygen, and Ionic Strength on the Survival of Escherichia coli O157:H7 in Organic Acid Solutions. JOURNAL OF FOOD PROTECTION, 71(12), 2404–2409. https://doi.org/10.4315/0362-028X-71.12.2404

Sullivan, D. M., Bobay, B. G., Kojetin, D. J., Thompson, R. J., Rance, M., Strauch, M. A., & Cavanagh, J. (2008). Insights into the Nature of DNA Binding of AbrB-like Transcription Factors. STRUCTURE, 16(11), 1702–1713. https://doi.org/10.1016/j.str.2008.08.014

Schaff, J. E., Mbeunkui, F., Blackburn, K., Bird, D. M., & Goshe, M. B. (2008). A sequence-anchored genetic linkage map for the moss, Physcomitrella patens. Plant Journal, 56(5), 840–854.

Jones, C. N., Jones, C. I., Graham, W. D., Agris, P. F., & Spremulli, L. L. (2008). A Disease-causing Point Mutation in Human Mitochondrial tRNA(Met) Results in tRNA Misfolding Leading to Defects in Translational Initiation and Elongation. JOURNAL OF BIOLOGICAL CHEMISTRY, 283(49), 34445–34456. https://doi.org/10.1074/jbc.M806992200

Ramaroson, M. F., Ruby, J., Goshe, M. B., & Liu, H.-C. (2008). Changes in the Gallus gallus proteorne induced by Marek's disease virus. JOURNAL OF PROTEOME RESEARCH, 7(10), 4346–4358. https://doi.org/10.1021/pr800268h

Park, M.-R., Park, S.-H., Cho, S.-Y., Hemenway, C. L., Choi, H.-S., Sohn, S. H., & Kim, K.-H. (2008). RNA-RNA interactions between RNA elements at the 5 ' end and at the upstream of sgRNA of RNA genome are required for Potato virus X RNA replication. PLANT PATHOLOGY JOURNAL, 24(3), 289–295. https://doi.org/10.5423/PPJ.2008.24.3.289

Ascencio-Ibanez, J. T., Sozzani, R., Lee, T. J., Chu, T. M., Wolfinger, R. D., Cella, R., & Hanley-Bowdoin, L. (2008). [Review of Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection]. Plant Physiology, 148(1), 436–454.

Wang, X., Kota, U., He, K., Blackburn, K., Li, J., Goshe, M. B., … Clouse, S. D. (2008). Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling. DEVELOPMENTAL CELL, 15(2), 220–235. https://doi.org/10.1016/j.devcel.2008.06.011

Estrada, J. L., Collins, B., York, A., Bischoff, S., Sommer, J., Tsai, S., … Piedrahita, J. A. (2008, June). Successful cloning of the Yucatan minipig using commercial/occidental breeds as oocyte donors and embryo recipients. CLONING AND STEM CELLS, Vol. 10, pp. 287–296. https://doi.org/10.1089/clo.2008.0005

Hernandez, R., Paredes, A., & Brown, D. T. (2008). Sindbis virus conformational changes induced by a neutralizing anti-E1 monoclonal antibody. JOURNAL OF VIROLOGY, 82(12), 5750–5760. https://doi.org/10.1128/JVI.02673-07

Weiss, K. L., Meilleur, F., Blakeley, M. P., Myles, D. A., & Section, F. (2008). Preliminary neutron crystallographic analysis of selectively CH3-protonated deuterated rubredoxin from Pyrococcus furiosus. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 64(Pt 6), 537–540. https://doi.org/10.1107/S1744309108013997

Teixeira, S. C. M., Zaccai, G., Ankner, J., Bellissent-Funel, M. C., Bewley, R., Blakeley, M. P., … al. (2008). New sources and instrumentation for neutrons in biology (vol 345, pg 133, 2008). Chemical Physics, Vol. 351, pp. 170–170.

Bischoff, S. R., Tsai, S., Hardison, N. E., York, A. M., Freking, B. A., Nonneman, D., … Piedrahita, J. A. (2008). Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays. BMC GENOMICS, 9. https://doi.org/10.1186/1471-2164-9-252

Huigens, R. W., III, Ma, L., Gambino, C., Moeller, P. D. R., Basso, A., Cavanagh, J., … Melander, C. (2008). Control of bacterial biofilms with marine alkaloid derivatives. MOLECULAR BIOSYSTEMS, 4(6), 614–621. https://doi.org/10.1039/b719989a

Szurmant, H., Bobay, B. G., White, R. A., Sullivan, D. M., Thompson, R. J., Hwa, T., … Cavanagh, J. (2008). Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis†. Biochemistry, 47(30), 7782–7784. https://doi.org/10.1021/bi8009604

Agris, P. F. (2008). Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications. EMBO REPORTS, 9(7), 629–635. https://doi.org/10.1038/embor.2008.104

Vendeix, F. A. P., Dziergowska, A., Gustilo, E. M., Graham, W. D., Sproat, B., Malkiewicz, A., & Agris, P. F. (2008). Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding. BIOCHEMISTRY, 47(23), 6117–6129. https://doi.org/10.1021/bi702356j

Sisler, E. C. (2008). 1-alkenes: Ethylene action compounds or ethylene competitive inhibitors in plants. PLANT SCIENCE, 175(1-2), 145–148. https://doi.org/10.1016/j.plantsci.2007.12.005

Gustilo, E. M., Franck, A. P. F., & Agris, P. F. (2008). [Review of tRNA's modifications bring order to gene expression]. Current Opinion in Microbiology, 11(2), 134–140.

Teixeira, S. C. M., Zaccai, G., Ankner, J., Bellissent-Funel, M. C., Bewley, R., Blakeley, M. P., … Weiss, K. (2008, April 18). New sources and instrumentation for neutrons in biology. CHEMICAL PHYSICS, Vol. 345, pp. 133–151. https://doi.org/10.1016/j.chemphys.2008.02.030

Adomas, A., Heller, G., Olson, A., Osborne, J., Karlsson, M., Nahalkova, J., … Asiegbu, F. O. (2008). Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus. TREE PHYSIOLOGY, 28(6), 885–897. https://doi.org/10.1093/treephys/28.6.885

Park, M.-R., Kwon, S.-J., Choi, H.-S., Hemenway, C. L., & Kim, K.-H. (2008). Mutations that alter a repeated ACCA element located at the 5 ' end of the Potato virus X genome affect RNA accumulation. VIROLOGY, 378(1), 133–141. https://doi.org/10.1016/j.virol.2008.05.004

Novaes, E., Drost, D. R., Farmerie, W. G., Pappas, G. J., Jr., Grattapaglia, D., Sederoff, R. R., & Kirst, M. (2008). High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC GENOMICS, 9. https://doi.org/10.1186/1471-2164-9-312

Burnette, J. E., Kiesel, S., Sayers, D. E., & Nemanich, R. J. (2008). Titanium Interlayer Mediated Epitaxy of CoSi2 on Si1-xGex. THIN SOLID FILMS, 516(8), 1809–1817. https://doi.org/10.1016/j.tsf.2007.08.045

MacKenzie, S. H., & Clark, A. C. (2008). [Review of Targeting cell death in tumors by activating Caspases]. Current Cancer Drug Targets, 8(2), 98–109.

Apelbaum, A., Sisler, E. C., Feng, X., & Goren, R. (2008). Assessment of the potency of 1-substituted cyclopropenes to counteract ethylene-induced processes in plants. PLANT GROWTH REGULATION, 55(2), 101–113. https://doi.org/10.1007/s10725-008-9264-9

Heller, G., Adomas, A., Li, G. S., Osborne, J., Van Zyl, L., Sederoff, R., … Asiegbu, F. O. (2008). Transcriptional analysis of Pinus sylvestris roots challenged with the ectomycorrhizal fungus Laccaria bicolor. BMC Plant Biology, 8.

Whang, H. S., Vendeix, F. A. P., Gracz, H. S., Gadsby, J., & Tonelli, A. (2008). NMR studies of the inclusion complex of cloprostenol sodium salt with beta-cyclodextrin in aqueous solution. PHARMACEUTICAL RESEARCH, 25(5), 1142–1149. https://doi.org/10.1007/s11095-007-9493-z

Richards, J. J., Huigens III, R. W., Ballard, T. E., Basso, A., Cavanagh, J., & Melander, C. (2008). Inhibition and dispersion of proteobacterial biofilms. Chemical Communications, (14), 1698. https://doi.org/10.1039/b719802g

Clark, A. C. (2008). Protein folding: Are we there yet? Archives of Biochemistry and Biophysics, 469(1), 1–3.

Mattos, C., & Clark, A. C. (2008). [Review of Minimizing frustration by folding in an aqueous environment]. Archives of Biochemistry and Biophysics, 469(1), 118–131.

Longo, A., Guanga, G. P., & Rose, R. B. (2008). Crystal structure of E47 neuroD1/Beta2 bHLH domain DNA complex: Heterodimer selectivity and DNA recognition. BIOCHEMISTRY, 47(1), 218–229. https://doi.org/10.1021/bi701527r

Burns, V. A., Bobay, B. G., Basso, A., Cavanagh, J., & Melander, C. (2008). Targeting RNA with cysteine-constrained peptides. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 18(2), 565–567. https://doi.org/10.1016/j.bmcl.2007.11.096

Galvao, R. M., Kota, U., Soderblom, E. J., Goshe, M. B., & Boss, W. F. (2008). Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains. BIOCHEMICAL JOURNAL, 409, 117–127. https://doi.org/10.1042/bj20070959

Tang, G.-Q., & Maxwell, E. S. (2008). Xenopus microRNA genes are predominantly located within introns and are diffferentially expressed in adult frog tissues via post-transcriptional regulation. GENOME RESEARCH, 18(1), 104–112. https://doi.org/10.1101/gr.6539108

Kim, J., Gracz, H. S., Roberts, G. W., & Kiserow, D. J. (2008). Spectroscopic analysis of poly(bisphenol A carbonate) using high resolution C-13 and H-1 NMR. POLYMER, 49(2), 394–404. https://doi.org/10.1016/j.polymer.2007.11.046

Loo, L. N., Guenther, R. H., Lommel, S. A., & Franzen, S. (2008). Infusion of dye molecules into Red clover necrotic mosaic virus. CHEMICAL COMMUNICATIONS, (1), 88–90. https://doi.org/10.1039/b714748a

Clare, D. A., Zheng, Z., Hassan, H. M., Swaisgood, H. E., & Catignani, G. L. (2008). Antimicrobial properties of milkfat globule membrane fractions. JOURNAL OF FOOD PROTECTION, 71(1), 126–133. https://doi.org/10.4315/0362-028X-71.1.126