Molecular and Structural Biochemistry - 2011

A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. (2011). Journal of Experimental Botany. https://doi.org/10.1093/jxb/err066

Willis, M. N., Liu, Y., Biterova, E. I., Simpson, M. A., Kim, H., Lee, J., & Barycki, J. J. (2011). Enzymatic Defects Underlying Hereditary Glutamate Cysteine Ligase Deficiency Are Mitigated by Association of the Catalytic and Regulatory Subunits. Biochemistry, 50(29), 6508–6517. https://doi.org/10.1021/bi200708w

Wang, R., Lockney, D. M., Goshe, M. B., & Franzen, S. (2011). Mass Spectrometric Detection of Targeting Peptide Bioconjugation to Red clover necrotic mosaic virus. BIOCONJUGATE CHEMISTRY, 22(10), 1970–1982. https://doi.org/10.1021/bc2001769

Bunders, C. A., Minvielle, M. J., Worthington, R. J., Ortiz, M., Cavanagh, J., & Melander, C. (2011). Intercepting Bacterial Indole Signaling with Flustramine Derivatives. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 133(50), 20160–20163. https://doi.org/10.1021/ja209836z

Shen, Q., Liu, Z., Song, F., Xie, Q., Hanley-Bowdoin, L., & Zhou, X. (2011). Tomato SlSnRK1 Protein Interacts with and Phosphorylates beta C1, a Pathogenesis Protein Encoded by a Geminivirus beta-Satellite. PLANT PHYSIOLOGY, 157(3), 1394–1406. https://doi.org/10.1104/pp.111.184648

Troxell, B., Fink, R. C., Porwollik, S., McClelland, M., & Hassan, H. M. (2011). The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets. BMC MICROBIOLOGY, 11. https://doi.org/10.1186/1471-2180-11-236

Theil, E. C., & Westhof, E. (2011, December). New Dimensions of RNA in Molecular Recognition and Catalysis. ACCOUNTS OF CHEMICAL RESEARCH, Vol. 44, pp. 1255–1256. https://doi.org/10.1021/ar200261e

Chen, H.-C., Li, Q., Shuford, C. M., Liu, J., Muddiman, D. C., Sederoff, R. R., & Chiang, V. L. (2011). Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258. https://doi.org/10.1073/pnas.1116416109

Sanchez-Duran, M. A., Dallas, M. B., Ascencio-Ibanez, J. T., Reyes, M. I., Arroyo-Mateos, M., Ruiz-Albert, J., … Bejarano, E. R. (2011). Interaction between Geminivirus Replication Protein and the SUMO-Conjugating Enzyme Is Required for Viral Infection. JOURNAL OF VIROLOGY, 85(19), 9789–9800. https://doi.org/10.1128/jvi.02566-10

Edward L. D'Antonio, D'Antonio, J., Serrano, V., Gracz, H., Thompson, M. K., Ghiladi, R. A., … Franzen, S. (2011). Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin. BIOCHEMISTRY, 50(44), 9664–9680. https://doi.org/10.1021/bi201368u

Alejos-Gonzalez, F., Qu, G., Zhou, L.-L., Saravitz, C. H., Shurtleff, J. L., & Xie, D.-Y. (2011). Characterization of development and artemisinin biosynthesis in self-pollinated Artemisia annua plants. PLANTA, 234(4), 685–697. https://doi.org/10.1007/s00425-011-1430-z

Stowe, S. D., Richards, J. J., Tucker, A. T., Thompson, R., Melander, C., & Cavanagh, J. (2011). [Review of Anti-biofilm compounds derived from marine sponges]. Marine Drugs, 9(10), 2010–2035.

Schipper, J. L., MacKenzie, S. H., Sharma, A., & Clark, A. C. (2011). A bifunctional allosteric site in the dimer interface of procaspase-3. BIOPHYSICAL CHEMISTRY, 159(1), 100–109. https://doi.org/10.1016/j.bpc.2011.05.013

Feese, E., Sadeghifar, H., Gracz, H. S., Argyropoulos, D. S., & Ghiladi, R. A. (2011). Photobactericidal Porphyrin-Cellulose Nanocrystals: Synthesis, Characterization, and Antimicrobial Properties. BIOMACROMOLECULES, 12(10), 3528–3539. https://doi.org/10.1021/bm200718s

Thudi, N. K., Shu, S. T., Martin, C. K., Lanigan, L. G., Nadella, M. V. P., Van Bokhoven, A., … Rosol, T. J. (2011). Development of a Brain Metastatic Canine Prostate Cancer Cell Line. PROSTATE, 71(12), 1251–1263. https://doi.org/10.1002/pros.21341

Chien, K.-yi, Liu, H.-C., & Goshe, M. B. (2011). Development and Application of a Phosphoproteomic Method Using Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC), IMAC, and LC-MS/MS Analysis to Study Marek's Disease Virus Infection. JOURNAL OF PROTEOME RESEARCH, 10(9), 4041–4053. https://doi.org/10.1021/pr2002403

Balakshin, M., Capanema, E., Gracz, H., Chang, H.-min, & Jameel, H. (2011). Quantification of lignin-carbohydrate linkages with high-resolution NMR spectroscopy. PLANTA, 233(6), 1097–1110. https://doi.org/10.1007/s00425-011-1359-2

Smith, K. M., Nanda, K., Spears, C. J., Ribeiro, M., Vancini, R., Piper, A., … Hernandez, R. (2011). Structural mutants of dengue virus 2 transmembrane domains exhibit host-range phenotype. VIROLOGY JOURNAL, 8. https://doi.org/10.1186/1743-422x-8-289

Biswas, S., Buhrman, G., Gagnon, K., Mattos, C., Brown, B. A., II, & Maxwell, E. S. (2011). Comparative Analysis of the 15.5kD Box C/D snoRNP Core Protein in the Primitive Eukaryote Giardia lamblia Reveals Unique Structural and Functional Features. BIOCHEMISTRY, 50(14), 2907–2918. https://doi.org/10.1021/bi1020474

Kononchik, J. P., Vancini, R., & Brown, D. T. (2011). Alphavirus adsorption to mosquito cells as viewed by freeze fracture immunolabeling. VIROLOGY, 415(2), 132–140. https://doi.org/10.1016/j.virol.2011.04.011

Rechner, K. N., Weeks, K. J., & Pruitt, A. F. (2011). Total skin electron therapy technique for the canine patient. Veterinary Radiology & Ultrasound, 52(3), 345–352.

Li, X., Shew, C.-Y., He, L., Meilleur, F., Myles, D. A. A., Liu, E., … Chen, W.-R. (2011). Scattering functions of Platonic solids. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 44, 545–557. https://doi.org/10.1107/s0021889811011691

Mbeunkui, F., Grace, M. H., Lategan, C., Smith, P. J., Raskin, I., & Lila, M. A. (2011). Isolation and identification of antiplasmodial N-alkylamides from Spilanthes acmella flowers using centrifugal partition chromatography and ESI-IT-TOF-MS. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 879(21), 1886–1892. https://doi.org/10.1016/j.jchromb.2011.05.013

Evans, M. R., Fink, R. C., Vazquez-Torres, A., Porwollik, S., Jones-Carson, J., McClelland, M., & Hassan, H. M. (2011). Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium. BMC MICROBIOLOGY, 11. https://doi.org/10.1186/1471-2180-11-58

Kota, U., & Goshe, M. B. (2011). [Review of Advances in qualitative and quantitative plant membrane proteomics]. PHYTOCHEMISTRY, 72(10), 1040–1060. https://doi.org/10.1016/j.phytochem.2011.01.027

Harris, K. A., Jones, V., Bilbille, Y., Swairjo, M. A., & Agris, P. F. (2011). YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase. RNA, 17(9), 1678–1687.

Borreguero, J. M., He, J., Meilleur, F., Weiss, K. L., Brown, C. M., Myles, D. A., … Agarwal, P. K. (2011). Redox-Promoting Protein Motions in Rubredoxin. JOURNAL OF PHYSICAL CHEMISTRY B, 115(28), 8925–8936. https://doi.org/10.1021/jp201346x

Perez, C., Maggi, R. G., Diniz, P. P. V. P., & Breitschwerdt, E. B. (2011). Molecular and Serological Diagnosis of Bartonella Infection in 61 Dogs from the United States. JOURNAL OF VETERINARY INTERNAL MEDICINE, 25(4), 805–810. https://doi.org/10.1111/j.1939-1676.2011.0736.x

Graham, W. D., Barley-Maloney, L., Stark, C. J., Kaur, A., Stolyarchuk, K., Sproat, B., … Agris, P. F. (2011). Functional recognition of the modified human tRNA(UUU)(Lys3) anticodon domain by HIV's nucleocapsid protein and a peptide mimic. Journal of Molecular Biology, 410(4), 698–715.

Bunders, C., Cavanagh, J., & Melander, C. (2011). Flustramine inspired synthesis and biological evaluation of pyrroloindoline triazole amides as novel inhibitors of bacterial biofilms. ORGANIC & BIOMOLECULAR CHEMISTRY, 9(15), 5476–5481. https://doi.org/10.1039/c1ob05605k

Walters, J., Swartz, P., Mattos, C., & Clark, A. C. (2011). Thermodynamic, enzymatic and structural effects of removing a salt bridge at the base of loop 4 in (pro)caspase-3. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 508(1), 31–38. https://doi.org/10.1016/j.abb.2011.01.011

Cardona, J. A. C., Milner, R., Alleman, A. R., Williams, C., Vernau, W., Breen, M., & Tompkins, M. (2011). BCR-ABL translocation in a dog with chronic monocytic leukemia. VETERINARY CLINICAL PATHOLOGY, 40(1), 40–47. https://doi.org/10.1111/j.1939-165x.2010.00277.x

Tsai, S., Hardison, N. E., James, A. H., Motsinger-Reif, A. A., Bischoff, S. R., Thames, B. H., & Piedrahita, J. A. (2011). Transcriptional profiling of human placentas from pregnancies complicated by preeclampsia reveals disregulation of sialic acid acetylesterase and immune signalling pathways. PLACENTA, 32(2), 175–182. https://doi.org/10.1016/j.placenta.2010.11.014

Refaei, M. A., Combs, A., Kojetin, D. J., Cavanagh, J., Caperelli, C., Rance, M., … Tsang, P. (2011). Observing selected domains in multi-domain proteins via sortase-mediated ligation and NMR spectroscopy. JOURNAL OF BIOMOLECULAR NMR, 49(1), 3–7. https://doi.org/10.1007/s10858-010-9464-2

Hunt, S. R., Hernandez, R., & Brown, D. T. (2011). Role of the Vacuolar-ATPase in Sindbis Virus Infection. JOURNAL OF VIROLOGY, 85(3), 1257–1266. https://doi.org/10.1128/jvi.01864-10

Troxell, B., Sikes, M. L., Fink, R. C., Vazquez-Torres, A., Jones-Carson, J., & Hassan, H. M. (2011). Fur Negatively Regulates hns and Is Required for the Expression of HilA and Virulence in Salmonella enterica Serovar Typhimurium. JOURNAL OF BACTERIOLOGY, 193(2), 497–505. https://doi.org/10.1128/jb.00942-10

Nash, T. E., Dallas, M. B., Reyes, M. I., Buhrman, G. K., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2011). Functional Analysis of a Novel Motif Conserved across Geminivirus Rep Proteins. JOURNAL OF VIROLOGY, 85(3), 1182–1192. https://doi.org/10.1128/jvi.02143-10

Buhrman, G., Kumar, V. S. S., Cirit, M., Haugh, J. M., & Mattos, C. (2011). Allosteric Modulation of Ras-GTP Is Linked to Signal Transduction through RAF Kinase. JOURNAL OF BIOLOGICAL CHEMISTRY, 286(5), 3323–3331. https://doi.org/10.1074/jbc.m110.193854

Qu, G., Nues, R. W., Watkins, N. J., & Maxwell, E. S. (2011). The Spatial-Functional Coupling of Box C/D and C '/D ' RNPs Is an Evolutionarily Conserved Feature of the Eukaryotic Box C/D snoRNP Nucleotide Modification Complex. MOLECULAR AND CELLULAR BIOLOGY, 31(2), 365–374. https://doi.org/10.1128/mcb.00918-10

Mbeunkui, F., & Goshe, M. B. (2011). Investigation of solubilization and digestion methods for microsomal membrane proteome analysis using data-independent LC-MSE. PROTEOMICS, 11(5), 898–911. https://doi.org/10.1002/pmic.200900698