Molecular and Structural Biochemistry - 2019

Doherty, C., Friesner, J., Gregory, B., Loraine, A., Megraw, M., Meyers, B. C., … Wurtele, E. (2019). Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future. PLANT DIRECT, 3(1). https://doi.org/10.1002/pld3.109

Feese, E., Gracz, H. S., Boyle, P. D., & Ghiladi, R. A. (2019). Towards microbe-targeted photosensitizers: Synthesis, characterization and in vitro photodynamic inactivation of the tuberculosis model pathogen M. smegmatis by porphyrin-peptide conjugates. JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 23(11-12), 1414–1439. https://doi.org/10.1142/S1088424619501505

Good, L., Miller, W. G., Niedermeyer, J., Osborne, J., Siletzky, R. M., Carver, D., & Kathariou, S. (2019). Strain-Specific Differences in Survival of Campylobacter spp. in Naturally Contaminated Turkey Feces and Water. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 85(22). https://doi.org/10.1128/AEM.01579-19

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). Editorial: Forest Genomics and Biotechnology. FRONTIERS IN PLANT SCIENCE, Vol. 10. https://doi.org/10.3389/fpls.2019.01187

Cirne-Santos, C. C., Barros, C. de S., Richter Nogueira, C. C., Azevedo, R. C., Yamamoto, K. A., Silva Meira, G. L., … Palmer Paixao, L. C. (2019). Inhibition by Marine Algae of Chikungunya Virus Isolated From Patients in a Recent Disease Outbreak in Rio de Janeiro. FRONTIERS IN MICROBIOLOGY, 10. https://doi.org/10.3389/fmicb.2019.02426

Fleischman, D., Kaskar, O., Shams, R., Zhang, X., Olson, D., Zdanski, C., … Lee, Y. Z. (2019). A Novel Porcine Model for the Study of Cerebrospinal Fluid Dynamics: Development and Preliminary Results. FRONTIERS IN NEUROLOGY, 10. https://doi.org/10.3389/fneur.2019.01137

Chakraborty, S., Nguyen, B., Wasti, S. D., & Xu, G. (2019). [Review of Plant Leucine-Rich Repeat Receptor Kinase (LRR-RK): Structure, Ligand Perception, and Activation Mechanism]. MOLECULES, 24(17). https://doi.org/10.3390/molecules24173081

Schroeter, E. R., Blackburn, K., Goshe, M. B., & Schweitzer, M. H. (2019). Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses. ROYAL SOCIETY OPEN SCIENCE, 6(8). https://doi.org/10.1098/rsos.181433

Bordelon, T., Bobay, B., Murphy, A., Reese, H., Shanahan, C., Odeh, F., … Menegatti, S. (2019). Translating antibody-binding peptides into peptoid ligands with improved affinity and stability. JOURNAL OF CHROMATOGRAPHY A, 1602, 284–299. https://doi.org/10.1016/j.chroma.2019.05.047

Liebelt, D. J., Jordan, J. T., & Doherty, C. J. (2019). Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals. Phytochemistry Reviews, 18(6), 1409–1433. https://doi.org/10.1007/s11101-019-09617-z

Gonzaga, D. T. G., Gomes, R. S. P., Marra, R. K. F., Silva, F. C., Gomes, M. W. L., Ferreira, D. E., … Paixao, I. C. N. P. (2019). Inhibition of Zika Virus Replication by Synthetic Bis-Naphthoquinones. JOURNAL OF THE BRAZILIAN CHEMICAL SOCIETY, 30(8), 1697–1706. https://doi.org/10.21577/0103-5053.20190071

Ribeiro, M. S., Ayllon, T., Malirat, V., Portela Camara, D. C., Giordano Dias, C. M., Louzada, G., … Acevedo, R. C. (2019). High Prevalence of a Newly Discovered Wutai Mosquito Phasivirus in Mosquitoes from Rio de Janeiro, Brazil. INSECTS, 10(5). https://doi.org/10.3390/insects10050135

Pierce, J., Crow, L., Cuneo, M., Edwards, M., Herwig, K. W., Jennings, A., … Zhao, J. K. (2019). A prototype system for dynamically polarized neutron protein crystallography. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, 940, 430–434. https://doi.org/10.1016/j.nima.2019.06.023

Jardim, J. M., Du, X., Hart, P. W., Lucia, L., Jameel, H., Chang, H.-M., & Gracz, H. (2019). Fundamental molecular characterization and comparison of the 0, D-0, and E stage effluents from hardwood pulp bleaching. TAPPI JOURNAL, 18(6), 341–351. https://doi.org/10.32964/TJ18.6.341

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). Warm nights disrupt global transcriptional rhythms in field-grown rice panicles (Vol. 7). Vol. 7. https://doi.org/10.1101/702183

Zhang, X., Zhu, J., Sun, L., Yuan, Q., Cheng, G., & Argyropoulos, D. S. (2019). Extraction and characterization of lignin from corncob residue after acid-catalyzed steam explosion pretreatment. INDUSTRIAL CROPS AND PRODUCTS, 133, 241–249. https://doi.org/10.1016/j.indcrop.2019.03.027

Grinevich, D. O., Desai, J. S., Stroup, K. P., Duan, J., Slabaugh, E., & Doherty, C. J. (2019). Novel transcriptional responses to heat revealed by turning up the heat at night. Plant Molecular Biology, 101(1-2), 1–19. https://doi.org/10.1007/s11103-019-00873-3

Moghimi, N., Desai, J. S., Bheemanahalli, R., Impa, S. M., Vennapusa, A. R., Sebela, D., … Jagadish, S. V. K. (2019). New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum. J. Exp. Bot, 4. https://doi.org/10.1093/jxb/erz143

Argueso, C. T., Assmann, S. M., Birnbaum, K. D., Chen, S., Dinneny, J. R., Doherty, C. J., … Williams, C. M. (2019). Directions for research and training in plant omics: Big Questions and Big Data. Plant Direct, 3(4). https://doi.org/10.1002/pld3.133

Hernandez, R., Glaros, T., Rizzo, G., & Ferreira, D. F. (2019). Purification and Proteomic Analysis of Alphavirus Particles from Sindbis Virus Grown in Mammalian and Insect Cells. BIO-PROTOCOL, 9(10). https://doi.org/10.21769/BioProtoc.3239

Xiong, K., Shen, S., Wang, Y., & Chen, Y. (2019). Measurements and correlation of liquid-liquid equilibrium data for the ternary (methyl tert-butyl ketone plus o, m, p-benzenediol plus water) system at (333.2, 343.2 and 353.2) K. CHINESE JOURNAL OF CHEMICAL ENGINEERING, 27(4), 905–911. https://doi.org/10.1016/j.cjche.2018.09.011

Slabaugh, E., Desai, J. S., Sartor, R. C., Lawas, L. M. F., Krishna Jagadish, S. V., & Doherty, C. J. (2019). Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome. RNA, 25(6), 669–684. https://doi.org/10.1261/rna.070227.118

Mathews, S. L., Epps, M. J., Blackburn, R. K., Goshe, M. B., Grunden, A. M., & Dunn, R. R. (2019). Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste. ROYAL SOCIETY OPEN SCIENCE, 6(3). https://doi.org/10.1098/rsos.180748

Lavoie, R. A., Fazio, A., Blackburn, R. K., Goshe, M. B., Carbonell, R. G., & Menegatti, S. (2019). Targeted Capture of Chinese Hamster Ovary Host Cell Proteins: Peptide Ligand Discovery. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 20(7). https://doi.org/10.3390/ijms20071729

Paczkowski, J. E., McCready, A. R., Cong, J.-P., Li, Z., Jeffrey, P. D., Smith, C. D., … Bassler, B. L. (2019). An Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing Receptor. ACS CHEMICAL BIOLOGY, 14(3), 378–389. https://doi.org/10.1021/acschembio.8b00971

Lu, X., Selvaraj, B., Ghimire-Rijal, S., Orf, G. S., Meilleur, F., Blankenship, R. E., … Myles, D. A. A. (2019). Neutron and X-ray analysis of the Fenna-Matthews-Olson photosynthetic antenna complex from Prosthecochloris aestuarii. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 75(3), 171–175. https://doi.org/10.1107/S2053230X19000724

Wang, Y., Wu, Y., Gong, Q., Ismayil, A., Yuan, Y., Lian, B., … Liu, Y. (2019). Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4. JOURNAL OF VIROLOGY, 93(6). https://doi.org/10.1128/JVI.01675-18

Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2019). CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. NEW PHYTOLOGIST, 222(1), 244–260. https://doi.org/10.1111/nph.15505

Bembenek-Bailey, S. A., Niemuth, J. N., McClellan-Green, P. D., Godfrey, M. H., Harms, C. A., Gracz, H., & Stoskopf, M. K. (2019). NMR Metabolomic Analysis of Skeletal Muscle, Heart, and Liver of Hatchling Loggerhead Sea Turtles (Caretta caretta) Experimentally Exposed to Crude Oil and/or Corexit. METABOLITES, 9(2). https://doi.org/10.3390/metabo9020021

Knihtila, R., Volmar, A. Y., Meilleur, F., & Mattos, C. (2019). Titration of ionizable groups in proteins using multiple neutron data sets from a single crystal: application to the small GTPase Ras. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 75(2), 111–115. https://doi.org/10.1107/S2053230X18018125

Saggaf, M. H., Ndunguru, J., Tairo, F., Sseruwagi, P., Ascencio-Ibanez, J. T., Kilalo, D., & Miano, D. W. (2019). Immunohistochemical localization of Cassava brown streak virus and its morphological effect on cassava leaves. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 105, 67–76. https://doi.org/10.1016/j.pmpp.2018.06.001

Beachler, T., Gracz, H., Long, N. M., Borst, L., Morgan, D., Nebel, A., … Bailey, C. S. (2019). Allantoic Metabolites, Progesterone, and Estradiol-17 beta Remain Unchanged After Infection in an Experimental Model of Equine Ascending Placentitis. JOURNAL OF EQUINE VETERINARY SCIENCE, 73, 95–105. https://doi.org/10.1016/j.jevs.2018.11.014

Wang, J. P., Liu, B., Sun, Y., Chiang, V. L., & Sederoff, R. R. (2019). [Review of Enzyme-Enzyme Interactions in Monolignol Biosynthesis]. FRONTIERS IN PLANT SCIENCE, 9. https://doi.org/10.3389/fpls.2018.01942