Molecular and Structural Biochemistry - 2020

Current status of the multinational Arabidopsis community. (2020). Plant Direct, 4(7). https://doi.org/10.1002/pld3.248

Hassan, H. M., Mendoza, M., Rezvani, M., Koci, M. D., Dickey, A. N., & Scholl, E. H. (2020). Complete Genome Sequences of Lactobacillus Strains C25 and P38, Isolated from Chicken Cecum. Microbiology Resource Announcements, 9(39). https://doi.org/10.1128/MRA.00501-20

Schroeder, G. C., & Meilleur, F. (2020). Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 12(166). https://doi.org/10.3791/61903

Shrestha, S., Tung, J., Grinshpon, R. D., Swartz, P., Hamilton, P. T., Dimos, B., … Clark, A. C. (2020). Caspases from scleractinian coral show unique regulatory features. JOURNAL OF BIOLOGICAL CHEMISTRY, 295(43), 14578–14591. https://doi.org/10.1074/jbc.RA120.014345

Vennapusa, A. R., Somayanda, I. M., Doherty, C. J., & Jagadish, S. V. K. (2020). A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber. SCIENTIFIC REPORTS, 10(1). https://doi.org/10.1038/s41598-020-73958-5

Troxell, B., Mendoza, M., Ali, R., Koci, M., & Hassan, H. (2020). Attenuated Salmonella enterica Serovar Typhimurium, Strain NC983, Is Immunogenic, and Protective against Virulent Typhimurium Challenges in Mice. VACCINES, 8(4). https://doi.org/10.3390/vaccines8040646

Hoyer, J. S., Fondong, V. N., Dallas, M. M., Aimone, C. D., Deppong, D. O., Duffy, S., & Hanley-Bowdoin, L. (2020). Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(46). https://doi.org/10.1128/MRA.00802-20

Meinders, R. I., Mendoza, M., Dickey, A. N., Scholl, E. H., & Hassan, H. M. (2020). Complete Genome Sequences of Six Lactobacilli Isolated from American Quarter Horses. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(47). https://doi.org/10.1128/MRA.00997-20

Beachler, T. M., Bailey, C. S., Gracz, H. S., Morgan, D. R., Von Dollen, K. A., Ellis, K. E., … Lyle, S. K. (2020). Metabolomic Profile of Allantoic and Amniotic Fluid in Late-term Gestational Mares Characterized by H-1-nuclear Magnetic Resonance Spectroscopy. JOURNAL OF EQUINE VETERINARY SCIENCE, 94. https://doi.org/10.1016/j.jevs.2020.103235

Meilleur, F. (2020). A beginner’s guide to neutron macromolecular crystallography. The Biochemist, 42(6), 16–20. https://doi.org/10.1042/BIO20200078

Agarwal, S., Smith, M., De La Rosa, I., Verba, K. A., Swartz, P., Segura-Totten, M., & Mattos, C. (2020). Development of a structure-analysis pipeline using multiple-solvent crystal structures of barrier-to-autointegration factor. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 76, 1001–1014. https://doi.org/10.1107/S2059798320011341

Niu, B., Wang, W., Yuan, Z., Sederoff, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). [Review of Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease]. FRONTIERS IN MICROBIOLOGY, 11. https://doi.org/10.3389/fmicb.2020.585404

Trihemasava, K., Chakraborty, S., Blackburn, K., & Xu, G. (2020). Expression, purification, and phylogenetic analysis of MDIS1-INTERACTING RECEPTOR-LIKE KINASE1 (MIK1). PROTEIN JOURNAL, 39(5), 461–471. https://doi.org/10.1007/s10930-020-09926-9

Wear, E. E., Song, J., Zynda, G. J., Mickelson-Young, L., LeBlanc, C., Lee, T.-J., … Thompson, W. F. (2020). Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLOS GENETICS, 16(10). https://doi.org/10.1371/journal.pgen.1008623

Schwabe, M., Holzapfel, G., & Mattos, C. (2020, April). Exploring the Rap1A Active Site Through Accelerated Molecular Dynamic Simulations. FASEB JOURNAL, Vol. 34. https://doi.org/10.1096/fasebj.2020.34.s1.02775

Yamamoto, K. A., Blackburn, K., Migowski, E., Goshe, M. B., Brown, D. T., Ferreira, D. F., & Soares, M. R. (2020). Quantitative proteomic analysis of the tizoxanide effect in vero cells. SCIENTIFIC REPORTS, 10(1). https://doi.org/10.1038/s41598-020-71634-2

Azevedo, R. C., Cardoso, M. C. A., Caldas, L. A., Vieira Werneck, C. L., Cohen, C. N., Yamamoto, K. A., … Ferreira, D. F. (2020). The impact of Zika virus infection on human semen: a case study. FUTURE VIROLOGY, 15(1), 5–12. https://doi.org/10.2217/fvl-2019-0159

Beam, K., & Ascencio-Ibanez, J. T. (2020). [Review of Geminivirus Resistance: A Minireview]. FRONTIERS IN PLANT SCIENCE, 11. https://doi.org/10.3389/fpls.2020.01131

Pierce, J., Cuneo, M. J., Jennings, A., Li, L., Meilleur, F., Zhao, J., & Myles, D. A. A. (2020). Dynamic nuclear polarization enhanced neutron crystallography: Amplifying hydrogen in biological crystals. NEUTRON CRYSTALLOGRAPHY IN STRUCTURAL BIOLOGY, Vol. 634, pp. 153–175. https://doi.org/10.1016/bs.mie.2019.11.018

Meilleur, F., Kovalevsky, A., & Myles, D. A. A. (2020). IMAGINE: The neutron protein crystallography beamline at the high flux isotope reactor. NEUTRON CRYSTALLOGRAPHY IN STRUCTURAL BIOLOGY, Vol. 634, pp. 69–85. https://doi.org/10.1016/bs.mie.2019.11.016

He, Y.-Z., Wang, Y.-M., Yin, T.-Y., Fiallo-Oliv, E., Liu, Y.-Q., Hanley-Bowdoin, L., & Wang, X.-W. (2020). A plant DNA virus replicates in the salivary glands of its insect vector via recruitment of host DNA synthesis machinery. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(29), 16928–16937. https://doi.org/10.1073/pnas.1820132117

Hengel, H., Bosso-Lefevre, C., Grady, G., Szenker-Ravi, E., Li, H., Pierce, S., … Reversade, B. (2020). Loss-of-function mutations in UDP-Glucose 6-Dehydrogenase cause recessive developmental epileptic encephalopathy. NATURE COMMUNICATIONS, 11(1). https://doi.org/10.1038/s41467-020-14360-7

Mello, M. V. P., Domingos, T. F. S., Ferreira, D. F., Ribeiro, M. M. J., Ribeiro, T. P., Rodrigues, C. R., & Souza, A. M. T. (2020). [Review of Antiviral Drug Discovery and Development for Mayaro Fever - What do we have so far?]. MINI-REVIEWS IN MEDICINAL CHEMISTRY, 20(10), 921–928. https://doi.org/10.2174/1389557520666200316160425

Wheeler, E., Brooks, A. M., Concia, L., Vera, D. L., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2020). Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN]). PLANT PHYSIOLOGY, 183(1), 206–220. https://doi.org/10.1104/pp.19.01520

Ismayil, A., Yang, M., Haxim, Y., Wang, Y., Li, J., Han, L., … Liu, Y. (2020). Cotton leaf curl Multan virus beta C1 Protein Induces Autophagy by Disrupting the Interaction of Autophagy-Related Protein 3 with Glyceraldehyde-3-Phosphate Dehydrogenases([OPEN]). PLANT CELL, 32(4), 1124–1135. https://doi.org/10.1105/tpc.19.00759

Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2020, April 25). Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System (Vol. 4). Vol. 4. https://doi.org/10.1101/2020.04.23.051300

Dinh, P.-U. C., Paudel, D., Brochu, H., Popowski, K. D., Gracieux, M. C., Cores, J., … Cheng, K. (2020). Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis. NATURE COMMUNICATIONS, 11(1). https://doi.org/10.1038/s41467-020-14344-7

Milton, M. E., Draughn, G. L., Bobay, B. G., Stowe, S. D., Olson, A. L., Feldmann, E. A., … Cavanagh, J. (2020). The Solution Structures and Interaction of SinR and SinI: Elucidating the Mechanism of Action of the Master Regulator Switch for Biofilm Formation in Bacillus subtilis. JOURNAL OF MOLECULAR BIOLOGY, 432(2), 343–357. https://doi.org/10.1016/j.jmb.2019.08.019

Sherman, M. B., Guenther, R., Reade, R., Rochon, D. A., Sit, T., & Smith, T. J. (2020). Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. JOURNAL OF VIROLOGY, 94(2). https://doi.org/10.1128/JVI.01439-19

Kearney, B. M., Schwabe, M., Marcus, K. C., Roberts, D. M., Dechene, M., Swartz, P., & Mattos, C. (2020). DRoP: Automated detection of conserved solvent-binding sites on proteins. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 88(1), 152–165. https://doi.org/10.1002/prot.25781