Molecular and Structural Biochemistry - 2005

Altunay, M., Brown, D., Byrd, G., & Dean, R. (2005). Trust-Based Secure Workflow Path Construction. In B. Benatallah, F. Casati, & P. Traverso (Eds.), Service-Oriented Computing – ICSOC 2007 (pp. 382–395). https://doi.org/10.1007/11596141_29

Biterova, E. I., Turanov, A. A., Gladyshev, V. N., & Barycki, J. J. (2005). Crystal structures of oxidized and reduced mitochondrial thioredoxin reductase provide molecular details of the reaction mechanism. Proceedings of the National Academy of Sciences, 102(42), 15018–15023. https://doi.org/10.1073/pnas.0504218102

Meilleur, F., Dauvergne, M. T., Schlichting, I., Myles, D. A., & Acta crystallographica. Section, D. (2005). Production and X-ray crystallographic analysis of fully deuterated cytochrome P450cam. Biological Crystallography, 61(Pt 5), 539–544, https://doi.org/10.1107/s0907444905003872

Bennett, B. C., Meilleur, F., Myles, D. A., Howell, E. E., Dealwis, C. G., Acta crystallographica. Section, D., & crystallography, B. (2005). Preliminary neutron diffraction studies of Escherichia coli dihydrofolate reductase bound to the anticancer drug methotrexate. 61(Pt 5), 574–579, https://doi.org/10.1107/s0907444905004804

Hazemann, I., Dauvergne, M. T., Blakeley, M. P., Meilleur, F., Haertlein, M., Van Dorsselaer, A., … Acta crystallographica. Section, D. (2005). High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase. Biological Crystallography, 61(Pt 10), 1413–1417, https://doi.org/10.1107/s0907444905024285

Morris, C. R., Goldfarb, B., Isik, F., Li, C. S., Chang, H.-M., Sederoff, R., & Kadla, J. F. (2005). Variation of a-cellulose content and related metabolites during wood formation in loblolly pine. 13th ISWFPC Proceedings, 13.

Takashi, S., Pettersen, C. A., Park, J., Fang, S., Akley, N. J., & Adler, K. B. (2005). A peptide directed against the N-terminus of MARCKS protein attenuates release of myeloperoxidase (MPO) from human and canine neutrophils in vitro. 404nOtfound, Vol. 2, p. A633.

Sisler, E. C., Kebenei, Z., Winkelmann, T., & Serek, M. (2005). Efficacy of new inhibitors of ethylene perception in improvement of display life of ornamental crops. Proceedings of the VIIIth International Symposium on Postharvest Physiology of Ornamental Plants : Doorwerth, The Netherlands, August 10-14, 2003.

Marques, C. M., Carocha, V. J., Sa, A. R. P., Oliveira, M. R., Pires, A. M., Sederoff, R., & Borralho, N. M. G. (2005). Verification of QTL linked markers for propagation traits in Eucalyptus. TREE GENETICS & GENOMES, 1(3), 103–108. https://doi.org/10.1007/s11295-005-0013-1

Agris, P. F. (2005). Methods and compositions for determining the purity of chemically synthesized nucleic acids. Washington, DC: U.S. Patent and Trademark Office.

Agris, P. F., & Ashraf, S. (2005). Antibacterial and antiviral agents and methods of screening for the same. Washington, DC: U.S. Patent and Trademark Office.

McGregor, C. E., He, L., Ali, R. M., Sosinski, B., Jankowicz, J., Burg, K., & Labonte, D. R. (2005). The  effect of replicate number and image analysis method on sweetpotato [Ipomoea batatas (L.) Lam.] cDNA microarray results. Plant Molecular Biology Reporter, 23(4), 367–381.

Shultz, R. W., Settlage, S. B., Hanley-Bowdoin, L., & Thompson, W. F. (2005). A trichloroacetic acid-acetone method greatly reduces infrared autofluorescence of protein extracts from plant tissue. PLANT MOLECULAR BIOLOGY REPORTER, 23(4), 405–409. https://doi.org/10.1007/BF02788888

Safwat, N., Ninomiya-Tsuji, J., Gore, A. J., & Miller, W. L. (2005). Transforming growth factor beta-activated kinase 1 is a key mediator of ovine follicle-stimulating hormone beta-subunit expression. ENDOCRINOLOGY, 146(11), 4814–4824. https://doi.org/10.1210/en.2005-0457

Buhrman, G., Parker, B., Sohn, J., Rudolph, J., & Mattos, C. (2005). Structural mechanism of oxidative regulation of the phosphatase Cdc25B via an intramolecular disulfide bond. BIOCHEMISTRY, 44(14), 5307–5316. https://doi.org/10.1021/bi047449f

Connor, D. M., Sayers, D., Sumner, D. R., & Zhong, Z. (2005, August 11). Identification of fatigue damage in cortical bone by diffraction enhanced imaging. NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT, Vol. 548, pp. 234–239. https://doi.org/10.1016/j.nima.2005.03.095

Grichko, V. P., Glick, B. R., Grishko, VI, & Pauls, K. P. (2005). Evaluation of tomato plants with constitutive, root-specific, and stress-induced ACC deaminase gene expression. RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, 52(3), 359–364. https://doi.org/10.1007/s11183-005-0054-1

Buanong, M., Mibus, H., Sisler, E. C., & Serek, M. (2005). Efficacy of new inhibitors of ethylene perception in improvement of display quality of miniature potted roses (Rosa hybrida L.). PLANT GROWTH REGULATION, 47(1), 29–38. https://doi.org/10.1007/s10725-005-1768-y

Chen, C. Y., Rojanatavorn, K., Clark, A. C., & Shih, J. C. H. (2005). Characterization and enzymatic degradation of Sup35NM, a yeast prion-like protein. PROTEIN SCIENCE, 14(9), 2228–2235. https://doi.org/10.1110/ps.041234405

Kojetin, D. J., Thompson, R. J., Benson, L. M., Naylor, S., Waterman, J., Davies, K. G., … Cavanagh, J. (2005). Structural analysis of divalent metals binding to the Bacillus subtilis response regulator Spo0F: the possibility for In vitro metalloregulation in the initiation of sporulation. BIOMETALS, 18(5), 449–466. https://doi.org/10.1007/s10534-005-4303-8

Bobay, B. G., Andreeva, A., Mueller, G. A., Cavanagh, J., & Murzin, A. G. (2005). Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins. FEBS LETTERS, 579(25), 5669–5674. https://doi.org/10.1016/j.febslet.2005.09.045

Huggins, W., Ghosh, S. K., Nanda, K., & Wollenzien, P. (2005). Internucleotide movements during formation of 16 S rRNA-rRNA photocrosslinks and their connection to the 30 S subunit conformational dynamics. JOURNAL OF MOLECULAR BIOLOGY, 354(2), 358–374. https://doi.org/10.1016/j.jmb.2005.09.060

Wang, X. F., Goshe, M. B., Soderblom, E. J., Phinney, B. S., Kuchar, J. A., Li, J., … Clouse, S. D. (2005). Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase. PLANT CELL, 17(6), 1685–1703. https://doi.org/10.1105/tpc.105.031393

Settlage, S. B., See, R. G., & Hanley-Bowdoin, L. (2005). Geminivirus C3 protein: Replication enhancement and protein interactions. JOURNAL OF VIROLOGY, 79(15), 9885–9895. https://doi.org/10.1128/jvi.79.15.9885-9895.2005

Burnette, J. E., Nemanich, R. J., & Sayers, D. E. (2005). Formation of stable titanium germanosilicide thin films on Si1-xGex. JOURNAL OF APPLIED PHYSICS, 97(11). https://doi.org/10.1063/1.1923164

Ha, S. W., Gracz, H. S., Tonelli, A. E., & Hudson, S. M. (2005). Structural study of irregular amino acid sequences in the heavy chain of Bombyx mori silk fibroin. BIOMACROMOLECULES, 6(5), 2563–2569. https://doi.org/10.1021/bm050294m

Bruno-Barcena, J. M., Azcarate-Peril, M. A., Klaenhammer, T. R., & Hassan, H. M. (2005). Marker-free chromosomal integration of the manganese superoxide dismutase gene (sodA) from Streptococcus thermophilus into Lactobacillus gasseri. FEMS MICROBIOLOGY LETTERS, 246(1), 91–101. https://doi.org/10.1016/j.femsle.2005.03.044

Nelson, S., Hernandez, R., Ferreira, D., & Brown, D. T. (2005). In vivo processing and isolation of furin protease-sensitive alphavirus glycoproteins: a new technique for producing mutations in virus assembly. VIROLOGY, 332(2), 629–639. https://doi.org/10.1016/j.virol.2004.12.013

Kirst, M., Basten, C. J., Myburg, A. A., Zeng, Z. B., & Sederoff, R. R. (2005). Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid. GENETICS, 169(4), 2295–2303. https://doi.org/10.1534/genetics.104.039198

Wadenback, J., Clapham, D. H., Craig, D., Sederoff, R., Peter, G. F., Von Arnold, S., & Egertsdotter, U. (2005). Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays. BMC Genomics, 6(61).

Hernandez, R., Ferreira, D., Sinodis, C., Litton, K., & Brown, D. T. (2005). Single amino acid insertions at the junction of the Sindbis virus e2 transmembrane domain and endodomain disrupt virus envelopment and alter infectivity. Journal of Virology, 79(12), 7682–7697. https://doi.org/10.1128/JVI.79.7682-7697.2005

Venters, R. A., Coggins, B. E., Kojetin, D., Cavanagh, J., & Zhou, P. (2005). (4,2)D projection-reconstruction experiments for protein backbone assignment: Application to human carbonic anhydrase II and calbindin D-28K. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 127(24), 8785–8795. https://doi.org/10.1021/ja0509580

Kwon, S. J., Park, M. R., Kim, K. W., Plante, C. A., Hemenway, C. L., & Kim, K. H. (2005). cis-Acting sequences required for coat protein binding and in vitro assembly of Potato virus X. VIROLOGY, 334(1), 83–97. https://doi.org/10.1016/j.virol.2005.01.018

Tran, E., Zhang, XX, Lackey, L., & Maxwell, E. S. (2005). Conserved spacing between the box C/D and C '/D ' RNPs of the archaeal box C/D sRNP complex is required for efficient 2 '-O-methylation of target RNAs. RNA, 11(3), 285–293. https://doi.org/10.1261/rna.7223405

Ulrich, D. L., Kojetin, D., Bassler, B. L., Cavanagh, J., & Loria, J. P. (2005). Solution structure and dynamics of LuxU from Vibrio harveyi, a phosphotransferase protein involved in bacterial quorum sensing. JOURNAL OF MOLECULAR BIOLOGY, 347(2), 297–307. https://doi.org/10.1016/j.jmb.2005.01.039

Gore, A. J., Philips, D. P., Miller, W. L., & Bernard, D. J. (2005). Differential regulation of follicle stimulating hormone by activin A and TGFB1 in murine gonadotropes. Reproductive Biology and Endocrinology, 3.

Suryadi, J., Tran, E. J., Maxwell, E. S., & Brown, B. A. (2005). The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs. BIOCHEMISTRY, 44(28), 9657–9672. https://doi.org/10.1021/bi050568q

Bose, K., & Clark, A. C. (2005). pH effects on the stability and dimerization of procaspase-3. Protein Science, 14(1), 24–36.

Swaisgood, H. E. (2005). [Review of The importance of disulfide bridging]. BIOTECHNOLOGY ADVANCES, 23(1), 71–73. https://doi.org/10.1016/j.biotechadv.2004.09.004

Wan, C., Tempel, W., Liu, Z. J., Wang, B. C., & Rose, R. B. (2005). Structure of the conserved transcriptional repressor enhancer of rudimentary homolog. BIOCHEMISTRY, 44(13), 5017–5023. https://doi.org/10.1021/bi047785w

Feeney, B., & Clark, A. C. (2005). Reassembly of active caspase-3 is facilitated by the propeptide. JOURNAL OF BIOLOGICAL CHEMISTRY, 280(48), 39772–39785. https://doi.org/10.1074/jbc.M505834200

Su, P., Wu, J. C., Sommer, JR, Gore, A. J., Petters, R. M., & Miller, W. L. (2005). Conditional induction of ovulation in mice. BIOLOGY OF REPRODUCTION, 73(4), 681–687. https://doi.org/10.1095/biolreprod.104.039164