Molecular and Structural Biochemistry - 2010

Hernandez, R., & Brown, D. T. (2010). Growth and Maintenance of Mosquito Cell Lines. Current Protocols in Microbiology, 17(1), A.4J.1-A.4J.8. https://doi.org/10.1002/9780471729259.MCA04JS17

Hernandez, R., & Brown, D. T. (2010). Growth and Maintenance of Chick Embryo Fibroblasts (CEF). Current Protocols in Microbiology, 17(1), A.4I.1-A.4I.8. https://doi.org/10.1002/9780471729259.MCA04IS17

Hernandez, R., & Brown, D. T. (2010). Growth and Maintenance of Baby Hamster Kidney (BHK) Cells. Current Protocols in Microbiology, 17(1), A.4H.1-A.4H.7. https://doi.org/10.1002/9780471729259.MCA04HS17

Circadian control of global gene expression patterns. (2010). Annual Review of Genetics. https://doi.org/10.1146/annurev-genet-102209-163432

Biterova, E. I., & Barycki, J. J. (2010). Structural Basis for Feedback and Pharmacological Inhibition of Saccharomyces cerevisiae Glutamate Cysteine Ligase. Journal of Biological Chemistry, 285(19), 14459–14466. https://doi.org/10.1074/jbc.M110.104802

Szulc, Z. M., Bai, A., Bielawski, J., Mayroo, N., Miller, D. E., Gracz, H., … Bielawska, A. (2010). Synthesis, NMR characterization and divergent biological actions of 2 '-hydroxy-ceramide/dihydroceramide stereoisomers in MCF7 cells. BIOORGANIC & MEDICINAL CHEMISTRY, 18(21), 7565–7579. https://doi.org/10.1016/j.bmc.2010.08.050

Bobay, B. G., Thompson, R. J., Hoch, J. A., & Cavanagh, J. (2010). Long range dynamic effects of point-mutations trap a response regulator in an active conformation. FEBS LETTERS, 584(19), 4203–4207. https://doi.org/10.1016/j.febslet.2010.08.051

Novaes, E., Kirst, M., Chiang, V., Winter-Sederoff, H., & Sederoff, R. (2010). Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees. PLANT PHYSIOLOGY, 154(2), 555–561. https://doi.org/10.1104/pp.110.161281

Rho, H., Jones, C. N., & Rose, R. B. (2010). Kinetic Stability May Determine the Interaction Dynamics of the Bifunctional Protein DCoH1, the Dimerization Cofactor of the Transcription Factor HNF-1 alpha. BIOCHEMISTRY, 49(47), 10187–10197. https://doi.org/10.1021/bi1015056

Hailemariam, K., Iwasaki, K., Huang, B.-W., Sakamoto, K., & Tsuji, Y. (2010). Transcriptional regulation of ferritin and antioxidant genes by HIPK2 under genotoxic stress. JOURNAL OF CELL SCIENCE, 123(22), 3863–3871. https://doi.org/10.1242/jcs.073627

Martin, S. L., Guenther, R. H., Sit, T. L., Swartz, P. D., Meilleur, F., Lommel, S. A., … Section, F. (2010). Crystallization and preliminary X-ray diffraction analysis of red clover necrotic mosaic virus. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 66(Pt 11), 1458–1462. https://doi.org/10.1107/s1744309110032483

Grace, M. H., Lategan, C., Mbeunkui, F., Graziose, R., Smith, P. J., Raskin, I., & Lila, M. A. (2010). Antiplasmodial and cytotoxic activities of drimane sesquiterpenes from Canella winterana. Natural Product Communications, 5(12), 1869–1872.

Shi, R., Yang, C., Lu, S., Sederoff, R., & Chiang, V. L. (2010). Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa. PLANTA, 232(6), 1281–1288. https://doi.org/10.1007/s00425-010-1253-3

Hobbs, C. A., Bobay, B. G., Thompson, R. J., Perego, M., & Cavanagh, J. (2010). NMR Solution Structure and DNA-binding Model of the DNA-binding Domain of Competence Protein A. JOURNAL OF MOLECULAR BIOLOGY, 398(2), 248–263. https://doi.org/10.1016/j.jmb.2010.03.003

Wyatt, S. E., Sederoff, R., Flaishman, M. A., & Lev-Yadun, S. (2010). Arabidopsis thaliana as a model for gelatinous fiber formation. RUSSIAN JOURNAL OF PLANT PHYSIOLOGY, 57(3), 363–367. https://doi.org/10.1134/s1021443710030076

He, L., Piper, A., Meilleur, F., Myles, D. A. A., Hernandez, R., Brown, D. T., & Heller, W. T. (2010). The Structure of Sindbis Virus Produced from Vertebrate and Invertebrate Hosts as Determined by Small-Angle Neutron Scattering. JOURNAL OF VIROLOGY, 84(10), 5270–5276. https://doi.org/10.1128/jvi.00044-10

Scheunemann, A. E., Graham, W. D., Vendeix, F. A. P., & Agris, P. F. (2010). Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA. Nucleic Acids Research, 38(9), 3094–3105.

Bruno-Barcena, J. M., Azcarate-Peril, M. A., & Hassan, H. M. (2010). Role of Antioxidant Enzymes in Bacterial Resistance to Organic Acids. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(9), 2747–2753. https://doi.org/10.1128/aem.02718-09

Blackburn, K., Mbeunkui, F., Mitra, S. K., Mentzel, T., & Goshe, M. B. (2010). Improving Protein and Proteome Coverage through Data-Independent Multiplexed Peptide Fragmentation. JOURNAL OF PROTEOME RESEARCH, 9(7), 3621–3637. https://doi.org/10.1021/pr100144z

Lee, T.-J., Pascuzzi, P. E., Settlage, S. B., Shultz, R. W., Tanurdzic, M., Rabinowicz, P. D., … Thompson, W. F. (2010). Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State. PLoS Genetics, 6(6), e1000982. https://doi.org/10.1371/journal.pgen.1000982

Gardberg, A. S., Castillo, D., Ar, W., Kl, M., F, B., Mp, M., … D. (2010). Unambiguous determination of H-atom positions: comparing results from neutron and high-resolution X-ray crystallography. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 66(Pt 5), 558–567. https://doi.org/10.1107/s0907444910005494

Serrano, V., D'Antonio, J., Franzen, S., & Ghiladi, R. A. (2010). Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata. Acta Crystallographica. Section D, Biological Crystallography, 66, 529–538.

Xue, S., Wang, R., Yang, F., Terns, R. M., Terns, M. P., Zhang, X., … Li, H. (2010). Structural Basis for Substrate Placement by an Archaeal Box C/D Ribonucleoprotein Particle. MOLECULAR CELL, 39(6), 939–949. https://doi.org/10.1016/j.molcel.2010.08.022

Mbeunkui, F., Scholl, E. H., Opperman, C. H., Goshe, M. B., & Bird, D. M. K. (2010). Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism. JOURNAL OF PROTEOME RESEARCH, 9(10), 5370–5381. https://doi.org/10.1021/pr1006069

Thompson, M. K., Davis, M. F., Serrano, V., Nicoletti, F. P., Howes, B. D., Smulevich, G., & Franzen, S. (2010). Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function. BIOPHYSICAL JOURNAL, 99(5), 1586–1595. https://doi.org/10.1016/j.bpj.2010.05.041

Kremer, A., Sederoff, R., & Wheeler, N. (2010). Genomics of forest and ecosystem health in the Fagaceae: meeting report. TREE GENETICS & GENOMES, 6(5), 815–820. https://doi.org/10.1007/s11295-010-0277-y

Dobrogosz, W. J., Peacock, T. J., & Hassan, H. M. (2010). Evolution of the Probiotic Concept: From Conception to Validation and Acceptance in Medical Science. ADVANCES IN APPLIED MICROBIOLOGY, VOL 72, Vol. 72, pp. 1–41. https://doi.org/10.1016/s0065-2164(10)72001-3

Serrano, V. S., Davis, M. F., Gaff, J. F., Zhang, Q., Chen, Z., D'Antonio, E. L., … Franzen, S. (2010). X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond. Acta Crystallographica. Section D, Biological Crystallography, 66, 770–782.

MacKenzie, S. H., Schipper, J. L., & Clark, A. C. (2010). [Review of The potential for caspases in drug discovery]. Current Opinion in Drug Discovery & Development, 13(5), 568–576.

Mudiganti, U., Hernandez, R., & Brown, D. T. (2010). Insect response to alphavirus infection-Establishment of alphavirus persistence in insect cells involves inhibition of viral polyprotein cleavage. VIRUS RESEARCH, 150(1-2), 73–84. https://doi.org/10.1016/j.virusres.2010.02.016

Bailey, C., Bell, E., Johnson, M., Mottos, C., Sears, D., & White, H. B. (2010). Commentary: Biochemistry and molecular biology educators launch national network. Biochemistry and Molecular Biology Education :
a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology, 38(4), 266–267.

Liu, F., & Goshe, M. B. (2010). Combinatorial Electrostatic Collision-Induced Dissociative Chemical Cross-linking Reagents for Probing Protein Surface Topology. ANALYTICAL CHEMISTRY, 82(14), 6215–6223. https://doi.org/10.1021/ac101030w

Shi, R., Sun, Y.-H., Li, Q., Heber, S., Sederoff, R., & Chiang, V. L. (2010). [Review of Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163. https://doi.org/10.1093/pcp/pcp175

Naidich, M., Shterntal, B., Furman, R., Pawson, A. J., Jabbour, H. N., Morgan, K., … Naor, Z. (2010). Elucidation of mechanisms of the reciprocal cross talk between gonadotropin-releasing hormone and prostaglandin receptors. Endocrinology, 151(6), 2700–2712.

Yang, H. O., Gurgel, P. V., Williams, D. K., Bobay, B. G., Cavanagh, J., Muddiman, D. C., & Carbonell, R. G. (2010). Binding site on human immunoglobulin G for the affinity ligand HWRGWV. Journal of Molecular Recognition, 23(3), 271–282.

Rogers, S. A., Huigens, R. W., III, Cavanagh, J., & Melander, C. (2010). Synergistic Effects between Conventional Antibiotics and 2-Aminoimidazole-Derived Antibiofilm Agents. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 54(5), 2112–2118. https://doi.org/10.1128/aac.01418-09

Blackburn, K., Cheng, F. Y., Williamson, J. D., & Goshe, M. B. (2010). Data-independent liquid chromatography/mass spectrometry (LC/MSE) detection and quantification of the secreted Apium graveolens pathogen defense protein mannitol dehydrogenase. Rapid Communications in Mass Spectrometry, 24(7), 1009–1016. https://doi.org/10.1002/rcm.4476

Seglie, L., Sisler, E. C., Mibus, H., & Serek, M. (2010). Use of a non-volatile 1-MCP formulation, N,N-dipropyl(1-cyclopropenylmethyl)amine, for improvement of postharvest quality of ornamental crops. Postharvest Biology and Technology, 56(2), 117–122.

Sozzani, R., Maggio, C., Giordo, R., Umana, E., Ascencio-Ibanez, J. T., Hanley-Bowdoin, L., … Albani, D. (2010). The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis. PLANT MOLECULAR BIOLOGY, 72(4-5), 381–395. https://doi.org/10.1007/s11103-009-9577-8

Gagnon, K. T., Zhang, X., Qu, G., Biswas, S., Suryadi, J., Brown, B. A., II, & Maxwell, E. S. (2010). Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif. RNA, 16(1), 79–90. https://doi.org/10.1261/rna.1692310

Buhrman, G., Holzapfel, G., Fetics, S., & Mattos, C. (2010). Allosteric modulation of Ras positions Q61 for a direct role in catalysis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107(11), 4931–4936. https://doi.org/10.1073/pnas.0912226107