Molecular and Structural Biochemistry - 2017

Hughes, R.-A., Ali, R. A., Mendoza, M. A., Hassan, H. M., & Koci, M. D. (2017). Impact of Dietary Galacto-Oligosaccharide (GOS) on Chicken’s Gut Microbiota, Mucosal Gene Expression, and Salmonella Colonization. Frontiers in Veterinary Science, 4. https://doi.org/10.3389/fvets.2017.00192

Michelmore, R., Coaker, G., Bart, R., Beattie, G., Bent, A., Bruce, T., … Walsh, J. (2017). Foundational and Translational Research Opportunities to Improve Plant Health. Molecular Plant-Microbe Interactions, 30(7), 515–516. https://doi.org/10.1094/mpmi-01-17-0010-cr

Golden, E., Yu, L.-J., Meilleur, F., Blakeley, M. P., Duff, A. P., Karton, A., & Vrielink, A. (2017). An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase. Scientific Reports, 7(1), 40517, https://doi.org/10.1038/srep40517

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. Angewandte Chemie, 129(3), 785–788. https://doi.org/10.1002/ange.201610502

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Inside Cover: Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase (Angew. Chem. Int. Ed. 3/2017). Angewandte Chemie International Edition, 56(3), 658–658. https://doi.org/10.1002/anie.201611987

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Innentitelbild: Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase (Angew. Chem. 3/2017). Angewandte Chemie. https://doi.org/10.1002/ange.201611987

Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2017). Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes. Scientific Reports. https://doi.org/10.1038/s41598-017-17143-1

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Brady, S. M. (2017, December). The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. PLANT PHYSIOLOGY, Vol. 175, pp. 1499–1509. https://doi.org/10.1104/pp.17.01490

Imkampe, J., Halter, T., Huang, S., Schulze, S., Mazzotta, S., Schmidt, N., … Kemmerling, B. (2017). The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1. PLANT CELL, 29(9), 2285–2303. https://doi.org/10.1105/tpc.17.00376

Milton, M. E., Allen, C. L., Feldmann, E. A., Bobay, B. G., Jung, D. K., Stephens, M. D., … Cavanagh, J. (2017). Structure of the Francisella response regulator QseB receiver domain, and characterization of QseB inhibition by antibiofilm 2-aminoimidazole-based compounds. MOLECULAR MICROBIOLOGY, 106(2), 223–235. https://doi.org/10.1111/mmi.13759

Cores, J., Hensley, M. T., Kinlaw, K., Rikard, S. M., Dinh, P.-U., Paudel, D., … Cheng, K. (2017). Safety and Efficacy of Allogeneic Lung Spheroid Cells in a Mismatched Rat Model of Pulmonary Fibrosis. STEM CELLS TRANSLATIONAL MEDICINE, 6(10), 1905–1916. https://doi.org/10.1002/sctm.16-0374

Kyallo, M., Ateka, E. M., Sseruwagi, P., Ascencio-Ibanez, J. T., Ssemakula, M.-O., Skilton, R., & Ndunguru, J. (2017). Infectivity of Deinbollia mosaic virus, a novel weed-infecting begomovirus in East Africa. ARCHIVES OF VIROLOGY, 162(11), 3439–3445. https://doi.org/10.1007/s00705-017-3495-x

Wear, E. E., Song, J., Zynda, G. J., LeBlanc, C., Lee, T.-J., Mickelson-Young, L., … Thompson, W. F. (2017). Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips. PLANT CELL, 29(9), 2126–2149. https://doi.org/10.1105/tpc.17.00037

Hiromoto, T., Meilleur, F., Shimizu, R., Shibazaki, C., Adachi, M., Tamada, T., & Kuroki, R. (2017). Neutron structure of the T26H mutant of T4 phage lysozyme provides insight into the catalytic activity of the mutant enzyme and how it differs from that of wild type. PROTEIN SCIENCE, 26(10), 1953–1963. https://doi.org/10.1002/pro.3230

Li, L., Shukla, S., Meilleur, F., Standaert, R. F., Pierce, J., Myles, D. A. A., & Cuneo, M. J. (2017). Neutron crystallographic studies of T4 lysozyme at cryogenic temperature. PROTEIN SCIENCE, 26(10), 2098–2104. https://doi.org/10.1002/pro.3231

Hauenstein, A. V., Xu, G., Kabaleeswaran, V., & Wu, H. (2017). Evidence for M1-Linked Polyubiquitin-Mediated Conformational Change in NEMO. JOURNAL OF MOLECULAR BIOLOGY, 429(24), 3793–3800. https://doi.org/10.1016/j.jmb.2017.10.026

Barycki, J. J. (2017, December 29). Covering their bases: The phosphobase methylation pathway in plants. JOURNAL OF BIOLOGICAL CHEMISTRY, Vol. 292, pp. 21703–21704. https://doi.org/10.1074/jbc.h117.000712

Lin, Y.-C. J., Chen, H., Li, Q., Li, W., Wang, J. P., Shi, R., … Chiang, V. L. (2017). Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729. https://doi.org/10.1073/pnas.1714422114

Tang, J., Cui, X., Caranasos, T. G., Hensley, M. T., Vandergriff, A. C., Hartanto, Y., … Cheng, K. (2017). Heart Repair Using Nanogel-Encapsulated Human Cardiac Stem Cells in Mice and Pigs with Myocardial Infarction. ACS NANO, 11(10), 9738–9749. https://doi.org/10.1021/acsnano.7b01008

Westmoreland, L. S. H., Niemuth, J. N., Gracz, H. S., & Stoskopf, M. K. (2017). Altered acrylic acid concentrations in hard and soft corals exposed to deteriorating water conditions. Facets, 2, 531–544. https://doi.org/10.1139/facets-2016-0064

Allali, I., Arnold, J. W., Roach, J., Cadenas, M. B., Butz, N., Hassan, H. M., … Azcarate-Peril, M. A. (2017). A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome. BMC MICROBIOLOGY, 17. https://doi.org/10.1186/s12866-017-1101-8

Reyes, M. I., Flores-Vergara, M. A., Guerra-Peraza, O., Rajabu, C., Desai, J., Hiromoto-Ruiz, Y. H., … Robertson, D. (2017). A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae. PLANT JOURNAL, 92(5), 796–807. https://doi.org/10.1111/tpj.13716

Zynda, G. J., Song, J., Concia, L., Wear, E. E., Hanley-Bowdoin, L., Thompson, W. F., & Vaughn, M. W. (2017). Repliscan: a tool for classifying replication timing regions. BMC BIOINFORMATICS, 18, 1–14. https://doi.org/10.1186/s12859-017-1774-x

Khan, M. A., Walden, W. E., Theil, E. C., & Goss, D. J. (2017). Thermodynamic and Kinetic Analyses of Iron Response Element (IRE)-mRNA Binding to Iron Regulatory Protein, IRP1. SCIENTIFIC REPORTS, 7. https://doi.org/10.1038/s41598-017-09093-5

Bodenheimer, A. M., William B. O'Dell, Stanley, C. B., & Meilleur, F. (2017). Structural studies of Neurospora crassa LPMO9D and redox partner CDHIIA using neutron crystallography and small-angle scattering. CARBOHYDRATE RESEARCH, 448, 200–204. https://doi.org/10.1016/j.carres.2017.03.001

Dinh, P.-U. C., Cores, J., Hensley, M. T., Vandergriff, A. C., Tang, J., Allen, T. A., … Cheng, K. (2017). Derivation of therapeutic lung spheroid cells from minimally invasive transbronchial pulmonary biopsies. RESPIRATORY RESEARCH, 18. https://doi.org/10.1186/s12931-017-0611-0

Hensley, M. T., Tang, J., Woodruff, K., Defrancesco, T., Tou, S., Williams, C. M., … Cheng, K. (2017). Intracoronary allogeneic cardiosphere-derived stem cells are safe for use in dogs with dilated cardiomyopathy. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 21(8), 1503–1512. https://doi.org/10.1111/jcmm.13077

Gross, M. A., Jensen, J. L., Gracz, H. S., Dancer, J., & Keener, K. M. (2017). Evaluation of physical and chemical properties and their interactions in fat, oil, and grease (FOG) deposits. WATER RESEARCH, 123, 173–182. https://doi.org/10.1016/j.watres.2017.06.072

Tang, J., Vandergriff, A., Wang, Z., Hensley, M. T., Cores, J., Allen, T. A., … Cheng, K. (2017). A Regenerative Cardiac Patch Formed by Spray Painting of Biomaterials onto the Heart. TISSUE ENGINEERING PART C-METHODS, 23(3), 146–155. https://doi.org/10.1089/ten.tec.2016.0492

Lu, H., Yuan, W., Cheng, J., Rose, R. B., Classen, J. J., & Simmons, O. D. (2017). Modeling the Growth of Archaeon Halobacterium halobium Affected by Temperature and Light. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 181(3), 1080–1095. https://doi.org/10.1007/s12010-016-2270-x

Santos, M., Dias-Pereira, P., Williams, C., Lopes, C., & Breen, M. (2017). Malignant canine mammary tumours: Preliminary genomic insights using oligonucleotide array comparative genomic hybridisation analysis. VETERINARY JOURNAL, 222, 68–71. https://doi.org/10.1016/j.tvjl.2017.03.005

William B. O'Dell, Swartz, P. D., Weiss, K. L., & Meilleur, F. (2017). Crystallization of a fungal lytic polysaccharide monooxygenase expressed from glycoengineered Pichia pastoris for X-ray and neutron diffraction. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 73(2), 70–78. https://doi.org/10.1107/s2053230x16020318

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., … Huber, S. C. (2017). Autophosphorylation-based Calcium (Ca2(+)) Sensitivity Priming and Ca2(+)/Calmodulin Inhibition of Arabidopsis thaliana Ca2(+)-dependent Protein Kinase 28 (CPK28). JOURNAL OF BIOLOGICAL CHEMISTRY, 292(10), 3988–4002. https://doi.org/10.1074/jbc.m116.763243

Shrauner, B., Blikslager, A., Davis, J., Campbell, N., Law, M., Lustgarten, M., & Prange, T. (2017). Feasibility and safety of lumbosacral epiduroscopy in the standing horse. EQUINE VETERINARY JOURNAL, 49(3), 322–328. https://doi.org/10.1111/evj.12591

Kish, W. S., Sachi, H., Naik, A. D., Roach, M. K., Bobay, B. G., Blackburn, R. K., … Carbonell, R. G. (2017). Design, selection, and development of cyclic peptide ligands for human erythropoietin. JOURNAL OF CHROMATOGRAPHY A, 1500, 105–120. https://doi.org/10.1016/j.chroma.2017.04.019

Shi, R., Wang, J. P., Lin, Y.-C., Li, Q., Sun, Y.-H., Chen, H., … Chiang, V. L. (2017). Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa. PLANTA, 245(5), 927–938. https://doi.org/10.1007/s00425-016-2640-1

Blackburn, K., Bustamante-Marin, X., Yin, W., Goshe, M. B., & Ostrowski, L. E. (2017). Quantitative Proteomic Analysis of Human Airway Cilia Identifies Previously Uncharacterized Proteins of High Abundance. JOURNAL OF PROTEOME RESEARCH, 16(4), 1579–1592. https://doi.org/10.1021/acs.jproteome.6b00972

Li, Z., Chakraborty, S., & Xu, G. (2017). Differential CLE peptide perception by plant receptors implicated from structural and functional analyses of TDIF-TDR interactions. PLOS ONE, 12(4). https://doi.org/10.1371/journal.pone.0175317

Shani, E., Salehin, M., Zhang, Y., Sanchez, S. E., Doherty, C., Wang, R., … Estelle, M. (2017). Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. CURRENT BIOLOGY, 27(3), 437–444. https://doi.org/10.1016/j.cub.2016.12.016

Tang, J., Shen, D., Caranasos, T. G., Wang, Z., Vandergriff, A. C., Allen, T. A., … Cheng, K. (2017). Therapeutic microparticles functionalized with biomimetic cardiac stem cell membranes and secretome. NATURE COMMUNICATIONS, 8. https://doi.org/10.1038/ncomms13724

William B. O'Dell, Agarwal, P. K., & Meilleur, F. (2017). Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 56(3), 767–770. https://doi.org/10.1002/anie.201610502

Mohiti-Asli, M., Saha, S., Murphy, S. V., Gracz, H., Pourdeyhimi, B., Atala, A., & Loboa, E. G. (2017). Ibuprofen loaded PLA nanofibrous scaffolds increase proliferation of human skin cells in vitro and promote healing of full thickness incision wounds in vivo. JOURNAL OF BIOMEDICAL MATERIALS RESEARCH PART B-APPLIED BIOMATERIALS, 105(2), 327–339. https://doi.org/10.1002/jbm.b.33520

Draughn, G. L., Allen, C. L., Routh, P. A., Stone, M. R., Kirker, K. R., Boegli, A., … Cavanagh, J. (2017). Evaluation of a 2-aminoimidazole variant as adjuvant treatment for dermal bacterial infections. Drug Design Development and Therapy, 11, 153–162.

Allen, T. A., Gracieux, D., Talib, M., Tokarz, D. A., Hensley, M. T., Cores, J., … Cheng, K. (2017). Angiopellosis as an Alternative Mechanism of Cell Extravasation. STEM CELLS, 35(1), 170–180. https://doi.org/10.1002/stem.2451