Molecular and Structural Biochemistry - 2018

Tang, Q., Chakraborty, S., & Xu, G. (2018). Mechanism of vaccinia viral protein B14–mediated inhibition of IκB kinase β activation. Journal of Biological Chemistry, 293(26), 10344–10352. https://doi.org/10.1074/JBC.RA118.002817

Mbewe, W., Hanley-Bowdoin, L., Ndunguru, J., & Duffy, S. (2018). Cassava viruses – host jumps, virus recombination, spread in plant material. In A. Records & J. Ristaino (Eds.), Emerging Plant Diseases and Global Food Security. St. Paul, MN: APS Press.

Schuchman, R. M., Vancini, R., Piper, A., Breuer, D., Ribeiro, M., Ferreira, D., … Brown, D. T. (2018). Role of the vacuolar ATPase in the Alphavirus replication cycle. Heliyon, 4(7), e00701. https://doi.org/10.1016/J.HELIYON.2018.E00701

Duff, M. R., Jr, Borreguero, J. M., Cuneo, M. J., Ramanathan, A., He, J., Kamath, G., … Agarwal, P. K. (2018). Modulating Enzyme Activity by Altering Protein Dynamics with Solvent. Biochemistry, 57(29), 4263–4275. https://doi.org/10.1021/ACS.BIOCHEM.8B00424

Ismayil, A., Haxim, Y., Wang, Y., Li, H., Qian, L., Han, T., … Liu, Y. (2018). Cotton Leaf Curl Multan virus C4 protein suppresses both transcriptional and post-transcriptional gene silencing by interacting with SAM synthetase. PLOS Pathogens, 14(8), e1007282. https://doi.org/10.1371/journal.ppat.1007282

Milton, M. E., Minrovic, B. M., Harris, D. L., Kang, B., Jung, D., Lewis, C. P., … Cavanagh, J. (2018). Re-sensitizing Multidrug Resistant Bacteria to Antibiotics by Targeting Bacterial Response Regulators: Characterization and Comparison of Interactions between 2-Aminoimidazoles and the Response Regulators BfmR from Acinetobacter baumannii and QseB from Francisella spp. FRONTIERS IN MOLECULAR BIOSCIENCES, 5. https://doi.org/10.3389/fmolb.2018.00015

Ashkar, R., Bilheux, H. Z., Bordallo, H., Briber, R., Callaway, D. J. E., Cheng, X., … Smith, J. C. (2018). Neutron scattering in the biological sciences: progress and prospects. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 74, 1129–1168. https://doi.org/10.1107/S2059798318017503

Guenther, R. H., Lommel, S. A., Opperman, C. H., & Sit, T. L. (2018). Plant Virus-Based Nanoparticles for the Delivery of Agronomic Compounds as a Suspension Concentrate. VIRUS-DERIVED NANOPARTICLES FOR ADVANCED TECHNOLOGIES: METHODS AND PROTOCOLS, Vol. 1776, pp. 203–214. https://doi.org/10.1007/978-1-4939-7808-3_13

Tang, J., Wang, J., Huang, K., Ye, Y., Su, T., Qiao, L., … Cheng, K. (2018). Cardiac cell-integrated microneedle patch for treating myocardial infarction. SCIENCE ADVANCES, 4(11). https://doi.org/10.1126/sciadv.aat9365

Turpin, Z. M., Vera, D. L., Savadel, S. D., Lung, P.-Y., Wear, E. E., Mickelson-Young, L., … Bass, H. W. (2018, October). Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L). DATA IN BRIEF, Vol. 20, pp. 358–363. https://doi.org/10.1016/j.dib.2018.08.015

Young, W. M., Oh, A., Williams, J. G., Foster, M. L., Miller, W. W., Lunn, K. F., & Mowat, F. M. (2018). Clinical therapeutic efficacy of mycophenolate mofetil in the treatment of SARDS in dogs-a prospective open-label pilot study. VETERINARY OPHTHALMOLOGY, 21(6), 565–576. https://doi.org/10.1111/vop.12545

Meilleur, F., Coates, L., Cuneo, M. J., Kovalevsky, A., & Myles, D. A. A. (2018). [Review of The Neutron Macromolecular Crystallography Instruments at Oak Ridge National Laboratory: Advances, Challenges, and Opportunities]. CRYSTALS, 8(10). https://doi.org/10.3390/cryst8100388

Desai, J. S., Slabaugh, E., Liebelt, D. J., Fredenberg, J. D., Gray, B. N., Jagadish, S. V. K., … Doherty, C. J. (2018). Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance. FRONTIERS IN PLANT SCIENCE, 9. https://doi.org/10.3389/fpls.2018.01585

Caldo, K. M. P., Shen, W., Xu, Y., Hanley-Bowdoin, L., Chen, G., Weselake, R. J., & Lemieux, M. J. (2018). Diacylglycerol acyltransferase 1 is activated by phosphatidate and inhibited by SnRK1-catalyzed phosphorylation. PLANT JOURNAL, 96(2), 287–299. https://doi.org/10.1111/tpj.14029

Caldas, L. A., Ferreira, D. F., & Pereira Freitas, T. R. (2018). Prostaglandin A(1) triggers Mayaro virus inhibition and heat shock protein 70 expression in an epithelial cell model. REVISTA DA SOCIEDADE BRASILEIRA DE MEDICINA TROPICAL, 51(5), 584–590. https://doi.org/10.1590/0037-8682-0235-2018

Niedermeyer, J. A., Ring, L., Miller, W. G., Genger, S., Lindsey, C. P., Osborne, J., & Kathariou, S. (2018). Proximity to Other Commercial Turkey Farms Affects Colonization Onset, Genotypes, and Antimicrobial Resistance Profiles of Campylobacter spp. in Turkeys: Suggestive Evidence from a Paired-Farm Model. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(18). https://doi.org/10.1128/AEM.01212-18

Shen, W., Bobay, B. G., Greeley, L. A., Reyes, M. I., Rajabu, C. A., Blackburn, R. K., … Hanley-Bowdoin, L. (2018). Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection. PLANT PHYSIOLOGY, 178(1), 372–389. https://doi.org/10.1104/pp.18.00268

Haberl, B., Dissanayake, S., Wu, Y., Myles, D. A. A., Santos, A. M., Loguillo, M., … Boehler, R. (2018). Next-generation diamond cell and applications to single-crystal neutron diffraction. REVIEW OF SCIENTIFIC INSTRUMENTS, 89(9). https://doi.org/10.1063/1.5031454

Coates, L., Cao, H. B., Chakoumakos, B. C., Frontzek, M. D., Hoffmann, C., Kovalevsky, A. Y., … Ye, F. (2018). [Review of A suite-level review of the neutron single-crystal diffraction instruments at Oak Ridge National Laboratory]. REVIEW OF SCIENTIFIC INSTRUMENTS, 89(9). https://doi.org/10.1063/1.5030896

Oda, A., Messenger, K. M., Carbajal, L., Posner, L. P., Gardner, B. R., Hammer, S. H., … Bailey, K. M. (2018). Pharmacokinetics and pharmacodynamic effects in koi carp (Cyprinus carpio) following immersion in propofol. VETERINARY ANAESTHESIA AND ANALGESIA, 45(4), 529–538. https://doi.org/10.1016/j.vaa.2018.02.005

Chakraborty, S., Trihemasava, K., & Xu, G. (2018). Modifying Baculovirus Expression Vectors to Produce Secreted Plant Proteins in Insect Cells. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, (138). https://doi.org/10.3791/58283

Schuchman, R., Kilianski, A., Piper, A., Vancini, R., Ribeiro, J. M. C., Sprague, T. R., … Glaros, T. (2018). Comparative Characterization of the Sindbis Virus Proteome from Mammalian and Invertebrate Hosts Identifies nsP2 as a Component of the Virion and Sorting Nexin 5 as a Significant Host Factor for Alphavirus Replication. JOURNAL OF VIROLOGY, 92(14). https://doi.org/10.1128/jvi.00694-18

Balko, J. A., Oda, A., & Posner, L. P. (2018). Use of tricaine methanesulfonate or propofol for immersion euthanasia of goldfish (Carassius auratus). Journal of the American Veterinary Medical Association, 252(12), 1555–1561. https://doi.org/10.2460/javma.252.12.1555

Rajabu, C. A., Kennedy, G. G., Ndunguru, J., Ateka, E. M., Tairo, F., Hanley-Bowdoin, L., & Ascencio-Ibanez, J. T. (2018). Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses. JOURNAL OF VIROLOGICAL METHODS, 256, 89–99. https://doi.org/10.1016/j.jviromet.2018.03.002

Wang, J. P., Matthews, M. L., Williams, C. M., Shi, R., Yang, C., Tunlaya-Anukit, S., … Chiang, V. L. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. NATURE COMMUNICATIONS, 9. https://doi.org/10.1038/s41467-018-03863-z

Salles, T. S., Sa-Guimaraes, T. da E., Alvarenga, E. S., Guimaraes-Ribeiro, V., Meneses, M. D., Castro-Salles, P. F., … Moreira, M. F. (2018). [Review of History, epidemiology and diagnostics of dengue in the American and Brazilian contexts: a review]. PARASITES & VECTORS, 11. https://doi.org/10.1186/s13071-018-2830-8

Thomas, M. E., III, Grinshpon, R., Swartz, P., & Clark, A. C. (2018). Modifications to a common phosphorylation network provide individualized control in caspases. JOURNAL OF BIOLOGICAL CHEMISTRY, 293(15), 5447–5461. https://doi.org/10.1074/jbc.ra117.000728

Tang, J., Su, T., Huang, K., Dinh, P.-U., Wang, Z., Vandergriff, A., … Cheng, K. (2018). Targeted repair of heart injury by stem cells fused with platelet nanovesicles. NATURE BIOMEDICAL ENGINEERING, 2(1), 17–26. https://doi.org/10.1038/s41551-017-0182-x

Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2018). Genome-Wide Analysis of the Arabidopsis Replication Timing Program. PLANT PHYSIOLOGY, 176(3), 2166–2185. https://doi.org/10.1104/pp.17.01537

Draughn, G. L., Milton, M. E., Feldmann, E. A., Bobay, B. G., Roth, B. M., Olson, A. L., … Cavanagh, J. (2018). The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism. Journal of Molecular Biology, 430(6), 806–821. https://doi.org/10.1016/J.JMB.2018.02.002

Zhao, J., Xue, M., Gudanis, D., Gracz, H., Findenegg, G. H., Gdaniec, Z., & Franzen, S. (2018). Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation. JOURNAL OF INORGANIC BIOCHEMISTRY, 181, 65–73. https://doi.org/10.1016/j.jinorgbio.2018.01.006

Chakraborty, S., Pan, H., Tang, Q., Woolard, C., & Xu, G. (2018). The Extracellular Domain of Pollen Receptor Kinase 3 is structurally similar to the SERK family of co-receptors. SCIENTIFIC REPORTS, 8. https://doi.org/10.1038/s41598-018-21218-y

Vandergriff, A., Huang, K., Shen, D., Hu, S., Hensley, M. T., Caranasos, T. G., … Cheng, K. (2018). Targeting regenerative exosomes to myocardial infarction using cardiac homing peptide. THERANOSTICS, 8(7), 1869–1878. https://doi.org/10.7150/thno.20524

Bodenheimer, A. M., ODell, W. B., Oliver, R. C., Qian, S., Stanley, C. B., & Meilleur, F. (2018). Structural investigation of cellobiose dehydrogenase IIA: Insights from small angle scattering into intra- and intermolecular electron transfer mechanisms. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 1862(4), 1031–1039. https://doi.org/10.1016/j.bbagen.2018.01.016

Naik, P., Wang, J. P., Sederoff, R., Chiang, V., Williams, C., & Ducoste, J. J. (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLOS ONE, 13(3). https://doi.org/10.1371/journal.pone.0193896

Azcarate-Peril, M. A., Butz, N., Cadenas, M. B., Koci, M., Ballou, A., Mendoza, M., … Hassan, H. (2018). An Attenuated Salmonella enterica Serovar Typhimurium Strain and Galacto-Oligosaccharides Accelerate Clearance of Salmonella Infections in Poultry through Modifications to the Gut Microbiome. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 84(5). https://doi.org/10.1128/aem.02526-17

Carey, L. M., Kim, K. B., McCombs, N. L., Swartz, P., Kim, C., & Ghiladi, R. A. (2018). Selective tuning of activity in a multifunctional enzyme as revealed in the F21W mutant of dehaloperoxidase B from Amphitrite ornata. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 23(2), 209–219. https://doi.org/10.1007/s00775-017-1520-x