Molecular and Structural Biochemistry - 2021

Kudenov, M. W., Krafft, D., Scarboro, C. G., Doherty, C. J., & Balint-Kurti, P. (2021). Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme. POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833. https://doi.org/10.1117/12.2593970

Tolsma, J. S., Ryan, K. T., Torres, J. J., Richards, J. T., Richardson, Z., Land, E. S., … Doherty, C. J. (2021). The Circadian-clock Regulates the Arabidopsis Gravitropic Response. Gravitational and Space Research. https://doi.org/10.2478/gsr-2021-0014

Peacock, T., & Hassan, H. M. (2021). Role of the Mn-Catalase in Aerobic Growth of Lactobacillus plantarum ATCC 14431. Applied Microbiology. https://doi.org/10.3390/applmicrobiol1030040

Schröder, G. C., O'Dell, W. B., Webb, S. P., Agarwal, P. K., & Meilleur, F. (2021, December 13). Capture of activated dioxygen intermediates at the copper-active site of a lytic polysaccharide monooxygenase. https://doi.org/10.26434/chemrxiv-2021-n4c1x

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). Epigenetic modification associated with climate regulates betulin biosynthesis in birch. JOURNAL OF FORESTRY RESEARCH. https://doi.org/10.1007/s11676-021-01424-7

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021, September 9). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAld5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar (vol 12,& nbsp;695223, 2021). FRONTIERS IN PLANT SCIENCE, Vol. 12. https://doi.org/10.3389/fpls.2021.761291

Lin, C.-Y., Sun, Y., Song, J., Chen, H.-C., Shi, R., Yang, C., … Chiang, V. L. (2021). Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.727932

Goncalves Tiburcio, S. R., Macrae, A., Peixoto, R. S., Costa Rachid, C. T., Passos Mansoldo, F. R., Alviano, D. S., … Vermelho, A. B. (2021). Sulphate-reducing bacterial community structure from produced water of the Periquito and Galo de Campina onshore oilfields in Brazil. SCIENTIFIC REPORTS, 11(1). https://doi.org/10.1038/s41598-021-99196-x

Aimone, C. D., De Leon, L., Dallas, M. M., Ndunguru, J., Ascencio-Ibanez, J. T., & Hanley-Bowdoin, L. (2021). A New Type of Satellite Associated with Cassava Mosaic Begomoviruses. JOURNAL OF VIROLOGY, 95(21). https://doi.org/10.1128/JVI.00432-21

Pan, H., Kaur, P., Barnes, R., Detwiler, A. C., Sanford, S. L., Liu, M., … Wang, H. (2021). Structure, dynamics, and regulation of TRF1-TIN2-mediated trans- and cis-interactions on telomeric DNA. JOURNAL OF BIOLOGICAL CHEMISTRY, 297(3). https://doi.org/10.1016/j.jbc.2021.101080

Wang, Y., Gong, Q., Wu, Y., Huang, F., Ismayil, A., Zhang, D., … Liu, Y. (2021). A calmodulin-binding transcription factor links calcium signaling to antiviral RNAi defense in plants. CELL HOST & MICROBE, 29(9), 1393-+. https://doi.org/10.1016/j.chom.2021.07.003

Li, X., Li, Y., Zhao, M., Hu, Y., Meng, F., Song, X., … Zhao, X. (2021). Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19). https://doi.org/10.3390/ijms221910697

Ascencio-Ibanez, J. T., & Bobay, B. G. (2021). Conserved Structural Motif Identified in Peptides That Bind to Geminivirus Replication Protein Rep. BIOCHEMISTRY, 60(37), 2795–2809. https://doi.org/10.1021/acs.biochem.1c00408

Li, H., Dai, X., Huang, X., Xu, M., Wang, Q., Yan, X., … Li, Q. (2021, October 4). Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus. JOURNAL OF INTEGRATIVE PLANT BIOLOGY. https://doi.org/10.1111/jipb.13159

Ho, T. C., Blackburn, R. K., Goshe, M. B., & Williamson, J. D. (2021, September 24). Identification of multiple proteins whose interaction with mannitol dehydrogenase is induced by salicylic acid: Implications for unconventional secretion. PROTEOMICS. https://doi.org/10.1002/pmic.202100091

Sheppard, J., Land, E. S., Toennisson, T. A., Doherty, C. J., & Perera, I. Y. (2021). Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots. LIFE-BASEL, 11(10). https://doi.org/10.3390/life11101010

Schroeder, G. C., & Meilleur, F. (2021). Metalloprotein catalysis: structural and mechanistic insights into oxidoreductases from neutron protein crystallography. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 77(10), 1251–1269. https://doi.org/10.1107/S2059798321009025

Matthews, M. L., Wang, J. P., Sederoff, R., Chiang, V. L., & Williams, C. M. (2021). A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182. https://doi.org/10.1016/j.csbj.2020.11.046

Salles, T. S., Ferreira Meneses, M. D., Caldas, L. A., Sa-Guimaraes, T. E., Oliveira, D. M., Ventura, J. A., … Ferreira, D. F. (2021). Virucidal and antiviral activities of pomegranate (Punica granatum) extract against the mosquito-borne Mayaro virus. PARASITES & VECTORS, 14(1). https://doi.org/10.1186/s13071-021-04955-4

Li, Y., Li, X., Zhao, M.-H., Pang, Z.-Y., Wei, J.-T., Tigabu, M., … Zhao, X.-Y. (2021). [Review of An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use]. HORTICULTURAE, 7(8). https://doi.org/10.3390/horticulturae7080252

Enriquez, P., Krajewski, K., Strahl, B. D., Rothbart, S. B., Dowen, R. H., & Rose, R. B. (2021). Binding specificity and function of the SWI/SNF subunit SMARCA4 bromodomain interaction with acetylated histone. JOURNAL OF BIOLOGICAL CHEMISTRY, 297(4). https://doi.org/10.1016/j.jbc.2021.101145

Thompson, M. K., Shay, M. R., Serrano, V., Dumarieh, R., Ghiladi, R. A., & Franzen, S. (2021). A new inhibition mechanism in the multifunctional catalytic hemoglobin dehaloperoxidase as revealed by the DHP A(V59W) mutant: A spectroscopic and crystallographic study. JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 25(7-8), 756–771. https://doi.org/10.1142/S1088424621500826

Aimone, C. D., Lavington, E., Hoyer, J. S., Deppong, D. O., Mickelson-Young, L., Jacobson, A., … Duffy, S. (2021). Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation. JOURNAL OF GENERAL VIROLOGY, 102(7). https://doi.org/10.1099/jgv.0.001622

Green, S. B., Jr, R. J. L., Carey, S. M., Morgan, D. R., Gracz, H., Sherman, J., … Edward L. D'Antonio. (2021). Synthesis, biochemical, and biological evaluation of C2 linkage derivatives of amino sugars, inhibitors of glucokinase from Trypanosoma cruzi. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 47. https://doi.org/10.1016/j.bmcl.2021.128227

Wang, Q., Dai, X., Pang, H., Cheng, Y., Huang, X., Li, H., … Li, Q. (2021). BEL1-like Homeodomain Protein BLH6a Is a Negative Regulator of CAl5H2 in Sinapyl Alcohol Monolignol Biosynthesis in Poplar. FRONTIERS IN PLANT SCIENCE, 12. https://doi.org/10.3389/fpls.2021.695223

Peart, C. R., Williams, C., Pophaly, S. D., Neely, B. A., Gulland, F. M. D., Adams, D. J., … Wolf, J. B. W. (2021, June 27). Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution. MOLECULAR ECOLOGY RESOURCES. https://doi.org/10.1111/1755-0998.13443

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2021). Warm nights disrupt transcriptome rhythms in field-grown rice panicles. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25). https://doi.org/10.1073/pnas.2025899118

Yan, H., Pei, X., Zhang, H., Li, X., Zhang, X., Zhao, M., … Zhao, X. (2021). [Review of MYB-Mediated Regulation of Anthocyanin Biosynthesis]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6). https://doi.org/10.3390/ijms22063103

Shen, W., & Hanley-Bowdoin, L. (2021). SnRK1: a versatile plant protein kinase that limits geminivirus infection. CURRENT OPINION IN VIROLOGY, 47, 18–24. https://doi.org/10.1016/j.coviro.2020.12.002

Borges, F., Donoghue, M. T. A., LeBlanc, C., Wear, E. E., Tanurdzic, M., Berube, B., … Martienssen, R. A. (2021). Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation. CURRENT BIOLOGY, 31(3), 591-+. https://doi.org/10.1016/j.cub.2020.10.098

Yao, L., Swartz, P., Hamilton, P. T., & Clark, A. C. (2021). Remodeling hydrogen bond Interactions results in relaxed specificity of Caspase-3. BIOSCIENCE REPORTS, 41(1). https://doi.org/10.1042/BSR20203495

Schroder, G. C., William B. O'Dell, Swartz, P. D., & Meilleur, F. (2021). Preliminary results of neutron and X-ray diffraction data collection on a lytic polysaccharide monooxygenase under reduced and acidic conditions. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 77(4), 128–133. https://doi.org/10.1107/S2053230X21002399

Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2021). Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions. PLANT DIRECT, 5(3). https://doi.org/10.1002/pld3.317

Bheemanahalli, R., Knight, M., Quinones, C., Doherty, C. J., & Jagadish, S. V. K. (2021). Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice. SCIENTIFIC REPORTS, 11(1). https://doi.org/10.1038/s41598-021-85921-z

Fan, S., Foster, D., Miller, W. G., Osborne, J., & Kathariou, S. (2021). Impact of Ceftiofur Administration in Steers on the Prevalence and Antimicrobial Resistance of Campylobacter spp. MICROORGANISMS, 9(2). https://doi.org/10.3390/microorganisms9020318

Miller, W. J. (2021, February 1). Cultural Entanglements: Langston Hughes and the Rise of African and Caribbean Literature. MODERN PHILOLOGY, Vol. 118, pp. E224–E226. https://doi.org/10.1086/711904

Buhrman, G., Enriquez, P., Dillard, L., Baer, H., Truong, V., Grunden, A. M., & Rose, R. B. (2021). Structure, Function, and Thermal Adaptation of the Biotin Carboxylase Domain Dimer from Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase. BIOCHEMISTRY, 60(4), 324–345. https://doi.org/10.1021/acs.biochem.0c00815

Liu, C., Li, K., Wang, M., Fan, E., Yang, C., Wang, J., … Qu, G. (2021). Qu-2, a robust poplar suspension cell line for molecular biology. JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740. https://doi.org/10.1007/s11676-020-01266-9

Mickelson-Young, L., Wear, E. E., Song, J., Zynda, G. J., Hanley-Bowdoin, L., & Thompson, W. F. (2021). A protocol for genome-wide analysis of DNA replication timing in intact root tips. Methods in Molecular Biology Series.

Zimmer, B. M., Barycki, J. J., & Simpson, M. A. (2021). [Review of Integration of Sugar Metabolism and Proteoglycan Synthesis by UDP-glucose Dehydrogenase]. JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY, 69(1), 13–23. https://doi.org/10.1369/0022155420947500

Beachler, T. M., Gracz, H. S., Morgan, D. R., Bailey, S. A. B., Borst, L., Ellis, K. E., … Bailey, C. S. (2021). Plasma metabolomic profiling of healthy pregnant mares and mares with experimentally induced placentitis. EQUINE VETERINARY JOURNAL, 53(1), 85–93. https://doi.org/10.1111/evj.13262