Works Published in 2007

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Displaying works 1 - 20 of 40 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2007 journal article

Characterization of Helicobacter pyloriγ-Glutamyltranspeptidase Reveals the Molecular Basis for Substrate Specificity and a Critical Role for the Tyrosine 433-Containing Loop in Catalysis†,‡

Biochemistry, 46(46), 13407–13414.

By: A. Morrow*, K. Williams*, A. Sand*, G. Boanca* & J. Barycki*

co-author countries: United States of America 🇺🇸
MeSH headings : Binding Sites; Catalysis; Crystallography, X-Ray; Glutamic Acid / chemistry; Glutamic Acid / metabolism; Helicobacter pylori / enzymology; Hydrolysis; Kinetics; Ligands; Models, Molecular; Protein Structure, Tertiary; Substrate Specificity; Tyrosine / chemistry; Tyrosine / genetics; gamma-Glutamyltransferase / chemistry; gamma-Glutamyltransferase / genetics; gamma-Glutamyltransferase / metabolism
Source: Crossref
Added: October 29, 2020

2007 journal article

Characterization of Human UDP-Glucose Dehydrogenase Reveals Critical Catalytic Roles for Lysine 220 and Aspartate 280†

Biochemistry, 46(2), 369–378.

By: K. Easley*, B. Sommer*, G. Boanca*, J. Barycki* & M. Simpson*

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Substitution; Aspartic Acid / chemistry; Catalytic Domain / genetics; Dimerization; Humans; In Vitro Techniques; Kinetics; Lysine / chemistry; Models, Molecular; Mutagenesis, Site-Directed; Protein Structure, Quaternary; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Uridine Diphosphate Glucose Dehydrogenase / chemistry; Uridine Diphosphate Glucose Dehydrogenase / genetics; Uridine Diphosphate Glucose Dehydrogenase / metabolism
Source: Crossref
Added: August 28, 2020

2007 journal article

Structural Basis for Induced Fit Mechanisms in DNA Recognition by the Pdx1 Homeodomain†,‡

Biochemistry, 46(11), 2948–2957.

By: A. Longo n, G. Guanga n & R. Rose n

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Animals; Base Sequence; Cricetinae; Crystallization; Crystallography, X-Ray; DNA / metabolism; Homeodomain Proteins / genetics; Homeodomain Proteins / metabolism; Mesocricetus; Models, Molecular; Molecular Sequence Data; Nucleic Acid Conformation; Protein Conformation; Sequence Alignment; Trans-Activators / genetics; Trans-Activators / metabolism
Sources: Crossref, ORCID
Added: February 10, 2020

2007 journal article

Dynamic analysis of unwinding yarn from cylindrical packages, part III: The three-region model revisited

Textile Research Journal, 77.

By: Z. Pan, T. Ghosh & S. Batra

Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

NMR assignment of the N-terminal repeat domain of Bacillus subtilis ClpC

BIOMOLECULAR NMR ASSIGNMENTS, 1(2), 163–165.

co-author countries: United States of America 🇺🇸
author keywords: ClpC; Bacillus subtilis; N-domain; genetic competence; HSP100/AAA+
MeSH headings : Amino Acid Sequence; Bacterial Proteins / chemistry; Connexins / chemistry; Heat-Shock Proteins / chemistry; Magnetic Resonance Spectroscopy / methods; Protein Structure, Tertiary; Repetitive Sequences, Amino Acid
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 293(4), G729–G738.

By: I. Carroll*, J. Andrus*, J. Bruno-Barcena n, T. Klaenhammer n, H. Hassan n & D. Threadgill

co-author countries: United States of America 🇺🇸
author keywords: probiotic; Lactobacilli; oxidative stress; inflammatory bowel disease
MeSH headings : Animals; Anti-Inflammatory Agents / therapeutic use; Colitis / drug therapy; Colitis / pathology; Colon / pathology; Cyclooxygenase 2 / metabolism; Disease Models, Animal; Immunohistochemistry; Interleukin-10 / deficiency; Lactobacillus / enzymology; Mice; Peroxidase / metabolism; Probiotics / therapeutic use; Specific Pathogen-Free Organisms; Superoxide Dismutase / biosynthesis; Superoxide Dismutase / therapeutic use
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Abh and AbrB control of Bacillus subtilis antimicrobial gene expression

JOURNAL OF BACTERIOLOGY, 189(21), 7720–7732.

By: M. Strauch*, B. Bobay n, J. Cavanagh n, F. Yao*, A. Wilson* & Y. Le Breton*

co-author countries: United States of America 🇺🇸
MeSH headings : Bacillus subtilis / genetics; Bacillus subtilis / growth & development; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Base Sequence; Binding Sites; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Gene Expression Regulation, Bacterial; Genes, Bacterial; Kinetics; Molecular Sequence Data; Mutation; Plasmids; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Trranscript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion

TREE PHYSIOLOGY, 27(10), 1441–1458.

By: A. Adomas*, G. Heller*, G. Li*, A. Olson*, T. Chu*, J. Osborne n, D. Craig n, L. Van Zyl n ...

co-author countries: Sweden 🇸🇪 United States of America 🇺🇸
author keywords: antimicrobial peptide; microarray; peroxidase; phenylopropanoid pathway; pine; plant defence
MeSH headings : Fungi / physiology; Gene Expression Profiling; Gene Expression Regulation, Plant; Oligonucleotide Array Sequence Analysis; Pinus sylvestris / metabolism; Plant Diseases / microbiology; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / metabolism; Plant Roots / microbiology; Plant Roots / ultrastructure; Seedlings
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Peptide binding proclivities of calcium loaded calbindin-D28k

FEBS LETTERS, 581(24), 4778–4782.

co-author countries: United States of America 🇺🇸
author keywords: calbindin-D28k; NMR; chemical shift; peptides; modeling
MeSH headings : Animals; Calbindin 1; Calbindins; Calcium / metabolism; Circular Dichroism; Models, Molecular; Nuclear Magnetic Resonance, Biomolecular; Peptides / metabolism; Protein Binding; Protein Structure, Tertiary; Rats; S100 Calcium Binding Protein G / metabolism; Titrimetry
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Infection of cells by Sindbis virus at low temperature

Virology, 362(2), 461–467.

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Cell Fusion; Cell Line; Cricetinae; Endocytosis; Microscopy, Immunoelectron; Neutral Red / metabolism; Sindbis Virus / physiology; Temperature; Time Factors; Viral Plaque Assay; Virus Internalization
Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

High-frequency reversion of geminivirus replication protein mutants during infection

JOURNAL OF VIROLOGY, 81(20), 11005–11015.

By: G. Arguello-Astorga n, J. Ascencio-Ibanez n, M. Dallas n, B. Orozco n & L. Hanley-Bowdoin n

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / virology; Geminiviridae / genetics; Geminiviridae / physiology; Mosaic Viruses; Mutation, Missense; Plant Diseases / virology; Plant Viruses / genetics; Plant Viruses / physiology; Viral Proteins / genetics; Viral Proteins / metabolism; Viral Proteins / physiology; Virus Replication / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking

RNA, 13(11), 2000–2011.

By: W. Huggins, T. Shapkina* & P. Wollenzien*

author keywords: RNA tertiary structure; photocrosslinking rates; activation energy; conformational energy; T-1 excited state lifetimes
MeSH headings : Base Composition; Base Sequence; Buffers; Cytosine / chemistry; Molecular Sequence Data; Nucleic Acid Conformation; RNA, Bacterial; RNA, Transfer / chemistry; RNA, Transfer, Met / chemistry; RNA, Transfer, Phe / chemistry; RNA, Transfer, Val / chemistry; Temperature; Thermodynamics; Uracil / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 journal article

E-coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix

RNA BIOLOGY, 4(2), 85–92.

By: E. Gustilo n, D. Dubois, J. Lapointe & P. Agris*

co-author countries: United States of America 🇺🇸
author keywords: designed inhibitors; RNA fragments; competitive inhibitors; identity elements; modified RNA; translation
MeSH headings : Anticodon / chemistry; Base Sequence; Binding Sites; Enzyme Inhibitors / chemistry; Escherichia coli / enzymology; Escherichia coli Proteins / antagonists & inhibitors; Escherichia coli Proteins / metabolism; Glutamate-tRNA Ligase / antagonists & inhibitors; Glutamate-tRNA Ligase / metabolism; Molecular Sequence Data; Nucleic Acid Conformation; RNA, Transfer / chemistry; Thermodynamics; Transfer RNA Aminoacylation; Uridine / analogs & derivatives; Uridine / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 journal article

X-ray crystal structural analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from Amphitrite ornata

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 63, 1094–1101.

By: V. Serrano n, Z. Chen n, M. Davis n & S. Franzen n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Binding Sites; Crystallography, X-Ray / methods; Cysteine / chemistry; Escherichia coli / metabolism; Heme / chemistry; Hemoglobins / chemistry; Hydrogen Bonding; Models, Chemical; Models, Molecular; Molecular Conformation; Peroxidases / chemistry; Polychaeta / metabolism; Protein Conformation; Recombinant Proteins / chemistry; Serine / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Transformation efficiency of RasQ61 mutants linked to structural features of the switch regions in the presence of Raf

STRUCTURE, 15(12), 1618–1629.

co-author countries: United States of America 🇺🇸
MeSH headings : Catalysis; Crystallography, X-Ray; Guanosine Triphosphate / metabolism; Hydrolysis; Models, Molecular; Mutation; Protein Conformation; raf Kinases / metabolism; ras Proteins / chemistry; ras Proteins / genetics
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 21(21), 3395–3408.

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Bacillus subtilis / chemistry; Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Cross-Linking Reagents / chemistry; DNA-Binding Proteins / chemistry; Molecular Sequence Data; Peptide Mapping; Peptides / chemistry; Protein Conformation; Spectrometry, Mass, Electrospray Ionization; Tandem Mass Spectrometry / methods; Transcription Factors / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Location and role of free cysteinyl residues in the Sindbis virus E1 and E2 glycoproteins

JOURNAL OF VIROLOGY, 81(12), 6231–6240.

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Animals; Capsid / chemistry; Cell Line; Chromatography, Liquid; Cricetinae; Cysteine / chemistry; Disulfides / chemistry; Iodoacetamide / pharmacology; Mass Spectrometry; Membrane Glycoproteins / chemistry; Molecular Sequence Data; Mutation; Protein Conformation; Viral Envelope Proteins / chemistry
Source: Web Of Science
Added: August 6, 2018

2007 review

In vitro reconstitution and affinity purification of catalytically active archaeal box C/D sRNP complexes

[Review of ]. RNA modification, 425, 263–282.

co-author countries: United States of America 🇺🇸
MeSH headings : Chromatography, Affinity / methods; Chromatography, Ion Exchange / methods; Methanococcaceae; Ribonucleoproteins, Small Nuclear / isolation & purification
Source: NC State University Libraries
Added: August 6, 2018

2007 journal article

Rapid folding and unfolding of Apaf-1 CARD

JOURNAL OF MOLECULAR BIOLOGY, 369(1), 290–304.

co-author countries: United States of America 🇺🇸
author keywords: caspase recruitment domain; protein folding; folding kinetics; parallel folding channels; sequential mixing stopped-flow
MeSH headings : Apoptotic Protease-Activating Factor 1 / chemistry; Apoptotic Protease-Activating Factor 1 / metabolism; Crystallography, X-Ray; Fluorescence; Kinetics; Models, Biological; Protein Denaturation; Protein Folding; Protein Structure, Secondary; Protein Structure, Tertiary; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Predominantly buried residues in the response regulator Spo0F influence specific sensor kinase recognition

FEBS LETTERS, 581(7), 1425–1429.

By: P. McLaughlin n, B. Bobaya, E. Regel n, R. Thompson n, J. Hoch* & J. Cavanagh n

co-author countries: United States of America 🇺🇸
author keywords: sporulation; kinases; Spo0F mutants
MeSH headings : Alanine / chemistry; Alanine / genetics; Amino Acid Sequence; Amino Acid Substitution; Bacillus subtilis / metabolism; Bacillus subtilis / physiology; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Histidine Kinase; Nuclear Magnetic Resonance, Biomolecular; Protein Conformation; Protein Interaction Mapping; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Structure, Secondary; Spores, Bacterial
Source: Web Of Science
Added: August 6, 2018

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