Molecular and Structural Biochemistry

College of Agriculture and Life Sciences

Works Published in 2008

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Displaying works 1 - 20 of 42 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2008 journal article

Erratum to “New sources and instrumentation for neutrons in biology” [Chem. Phys. 345 (2008) 133–151]

Chemical Physics, 351(1-3), 170.

By: S. Teixeira*, G. Zaccai*, J. Ankner*, M. Bellissent-Funel*, R. Bewley*, M. Blakeley*, P. Callow*, L. Coates* ...

Sources: Crossref, ORCID
Added: September 9, 2020

2008 journal article

Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Proceedings of the National Academy of Sciences of the United States of America, 105(6), 1844–1848,

By: M. Blakeley*, F. Ruiz*, R. Cachau*, I. Hazemann*, F. Meilleur*, A. Mitschler*, S. Ginell*, P. Afonine* ...

author keywords: enzymatic mechanism; helium cooling; subatomic resolution crystallography; x-ray plus neutrons joint refinement
MeSH headings : Aldehyde Reductase / chemistry; Aldehyde Reductase / metabolism; Catalysis; Models, Molecular; Neutrons; Protons; Quantum Theory; X-Ray Diffraction / methods
Source: ORCID
Added: January 6, 2020

2008 journal article

Construction and characterization of mutant Dengue2 virus vaccine candidates displaying a host-range phenotype

Vaccine.

By: K. Smith, K. Nanda, C. Slominski, R. Hernandez, D. Brown & M. Thomas

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met)

NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557.

By: H. Lusic n, E. Gustilo n, F. Vendeix n, R. Kaiser n, M. Delaney n, W. Graham n, V. Moye n, W. Cantara n, P. Agris n, A. Deiters n

MeSH headings : Anticodon / chemistry; Base Sequence; Codon / metabolism; Cytidine / analogs & derivatives; Cytidine / chemistry; Humans; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; RNA / chemistry; RNA, Mitochondrial; RNA, Transfer, Met / chemical synthesis; RNA, Transfer, Met / chemistry; RNA, Transfer, Met / metabolism; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Effects of pH, Dissolved Oxygen, and Ionic Strength on the Survival of Escherichia coli O157:H7 in Organic Acid Solutions

JOURNAL OF FOOD PROTECTION, 71(12), 2404–2409.

By: A. Kreske n, K. Bjornsdottir n, F. Breidt n & H. Hassan n

MeSH headings : Acids / pharmacology; Colony Count, Microbial; Consumer Product Safety; Cucumis sativus / microbiology; Dose-Response Relationship, Drug; Escherichia coli O157 / drug effects; Escherichia coli O157 / growth & development; Food Contamination / analysis; Food Preservation / methods; Humans; Hydrogen-Ion Concentration; Osmolar Concentration; Oxygen / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Insights into the Nature of DNA Binding of AbrB-like Transcription Factors

STRUCTURE, 16(11), 1702–1713.

By: D. Sullivan n, B. Bobay n, D. Kojetin*, R. Thompson n, M. Rance*, M. Strauch*, J. Cavanagh n

MeSH headings : Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; DNA / chemistry; DNA / metabolism; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / metabolism; Hydrogen Bonding; Magnetic Resonance Spectroscopy; Models, Molecular; Protein Conformation; Thermodynamics; Transcription Factors / chemistry; Transcription Factors / metabolism
Source: Web Of Science
Added: August 6, 2018

2008 journal article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

Plant Journal, 56(5), 840–854.

By: J. Schaff, F. Mbeunkui, K. Blackburn, D. Bird & M. Goshe

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

A Disease-causing Point Mutation in Human Mitochondrial tRNA(Met) Results in tRNA Misfolding Leading to Defects in Translational Initiation and Elongation

JOURNAL OF BIOLOGICAL CHEMISTRY, 283(49), 34445–34456.

By: C. Jones*, C. Jones n, W. Graham n, P. Agris n & L. Spremulli*

MeSH headings : Animals; Base Sequence; Binding Sites; Cattle; Escherichia coli / enzymology; Humans; Mitochondria / enzymology; Mitochondria / metabolism; Mutation; Nucleic Acid Conformation; Nucleic Acid Denaturation; Optic Atrophy, Hereditary, Leber / genetics; Point Mutation; Protein Biosynthesis; RNA, Transfer, Met / chemistry; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Changes in the Gallus gallus proteorne induced by Marek's disease virus

JOURNAL OF PROTEOME RESEARCH, 7(10), 4346–4358.

author keywords: Marek's disease virus; chicken proteome; mu rpLC/MS/MS
MeSH headings : Animals; Chickens / virology; Computational Biology; Herpesvirus 2, Gallid / metabolism; Humans; Mass Spectrometry; Molecular Sequence Data; Peptides / analysis; Phosphopeptides / analysis; Proteome
Source: Web Of Science
Added: August 6, 2018

2008 journal article

RNA-RNA interactions between RNA elements at the 5 ' end and at the upstream of sgRNA of RNA genome are required for Potato virus X RNA replication

PLANT PATHOLOGY JOURNAL, 24(3), 289–295.

By: M. Park, S. Park, S. Cho, C. Hemenway*, H. Choi, S. Sohn, K. Kim*

author keywords: plus-strand RNA accumulation; PVX; replication; RNA-RNA base-pairing
Source: Web Of Science
Added: August 6, 2018

2008 review

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection

[Review of ]. Plant Physiology, 148(1), 436–454.

By: J. Ascencio-Ibanez, R. Sozzani, T. Lee, T. Chu, R. Wolfinger, R. Cella, L. Hanley-Bowdoin

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling

DEVELOPMENTAL CELL, 15(2), 220–235.

By: X. Wang n, U. Kota n, K. He*, K. Blackburn n, J. Li*, M. Goshe n, S. Huber*, S. Clouse n

MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / enzymology; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Brassinosteroids; Cholestanols / metabolism; Cholestanols / pharmacology; Chromatography, Liquid; Flagellin / metabolism; Mass Spectrometry; Models, Biological; Molecular Sequence Data; Mutation / genetics; Phosphorylation / drug effects; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary; Signal Transduction / drug effects; Steroids, Heterocyclic / metabolism; Steroids, Heterocyclic / pharmacology; Substrate Specificity / drug effects
Source: Web Of Science
Added: August 6, 2018

2008 article

Successful cloning of the Yucatan minipig using commercial/occidental breeds as oocyte donors and embryo recipients

Estrada, J. L., Collins, B., York, A., Bischoff, S., Sommer, J., Tsai, S., … Piedrahita, J. A. (2008, June). CLONING AND STEM CELLS, Vol. 10, pp. 287–296.

MeSH headings : Animals; Cell Line; Cloning, Organism / methods; Fibroblasts / cytology; Microsatellite Repeats; Nuclear Transfer Techniques; Oocytes / physiology; Sus scrofa; Swine; Swine, Miniature / embryology
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Sindbis virus conformational changes induced by a neutralizing anti-E1 monoclonal antibody

JOURNAL OF VIROLOGY, 82(12), 5750–5760.

By: R. Hernandez n, A. Paredes* & D. Brown n

MeSH headings : Animals; Antibodies, Monoclonal / pharmacology; Cricetinae; Epitopes; Hydrogen-Ion Concentration; Immunoglobulin Fab Fragments / immunology; Kidney / cytology; Membrane Glycoproteins / immunology; Neutralization Tests; Peptide Mapping; Protein Binding; Protein Conformation; Sindbis Virus / chemistry; Sindbis Virus / physiology; Sindbis Virus / ultrastructure; Viral Envelope Proteins / immunology; Virion / physiology; Virion / ultrastructure
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Preliminary neutron crystallographic analysis of selectively CH3-protonated deuterated rubredoxin from Pyrococcus furiosus

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 64(Pt 6), 537–540.

MeSH headings : Amino Acid Sequence; Cysteine / chemistry; Deuterium Exchange Measurement; Escherichia coli / genetics; Hydrogen Bonding; Iron / chemistry; Molecular Sequence Data; Neutron Diffraction; Protons; Pyrococcus furiosus / chemistry; Pyrococcus furiosus / genetics; Pyrococcus furiosus / isolation & purification; Rubredoxins / chemistry; Rubredoxins / isolation & purification; Sulfur / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 article

New sources and instrumentation for neutrons in biology (vol 345, pg 133, 2008)

Chemical Physics, Vol. 351, pp. 170–170.

By: S. Teixeira, G. Zaccai, J. Ankner, M. Bellissent-Funel, R. Bewley, M. Blakeley, P. Callow, L. Coates ...

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

BMC GENOMICS, 9.

MeSH headings : Animals; Base Sequence; Computational Biology; DNA / genetics; Female; Fetus / metabolism; Gene Expression Profiling; INDEL Mutation; Linear Models; Male; Oligonucleotide Array Sequence Analysis / methods; Oligonucleotide Array Sequence Analysis / statistics & numerical data; Placenta / metabolism; Polymorphism, Single Nucleotide; Pregnancy; RNA / genetics; Species Specificity; Swine / genetics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Control of bacterial biofilms with marine alkaloid derivatives

MOLECULAR BIOSYSTEMS, 4(6), 614–621.

MeSH headings : Acinetobacter baumannii / drug effects; Acylation; Alkaloids / chemical synthesis; Alkaloids / chemistry; Alkaloids / pharmacology; Animals; Anti-Bacterial Agents / chemical synthesis; Anti-Bacterial Agents / chemistry; Anti-Bacterial Agents / pharmacology; Biofilms / drug effects; Biofilms / growth & development; Bordetella bronchiseptica / drug effects; Cell Line; Dose-Response Relationship, Drug; Imidazoles / chemical synthesis; Imidazoles / chemistry; Imidazoles / pharmacology; Mice; Microbial Sensitivity Tests; Molecular Structure; Pseudomonas aeruginosa / drug effects; Rats; Staphylococcus aureus / drug effects
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis†

Biochemistry, 47(30), 7782–7784.

MeSH headings : Analysis of Variance; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; Magnetic Resonance Spectroscopy; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Proteins / chemistry; Proteins / metabolism; Signal Transduction
Sources: Crossref, Web Of Science
Added: August 6, 2018

2008 journal article

Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications

EMBO REPORTS, 9(7), 629–635.

By: P. Agris n

author keywords: entropy; order; pre-structured; rRNA; tRNA
MeSH headings : Anticodon / metabolism; Genetic Code; Nucleic Acid Conformation; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA, Transfer / chemistry; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribosomes / metabolism
Source: Web Of Science
Added: August 6, 2018