Molecular and Structural Biochemistry

College of Agriculture and Life Sciences

Works Published in 2008

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Displaying works 1 - 20 of 42 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

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2008 journal article

Erratum to “New sources and instrumentation for neutrons in biology” [Chem. Phys. 345 (2008) 133–151]

Chemical Physics, 351(1-3), 170.

By: S. Teixeira *, G. Zaccai*, J. Ankner *, M. Bellissent-Funel*, R. Bewley *, M. Blakeley *, P. Callow*, L. Coates * ...

Sources: Crossref, ORCID
Added: September 9, 2020

2008 journal article

Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Proceedings of the National Academy of Sciences of the United States of America, 105(6), 1844–1848,

By: M. Blakeley *, F. Ruiz*, R. Cachau *, I. Hazemann*, F. Meilleur* , A. Mitschler*, S. Ginell*, P. Afonine * ...

author keywords: enzymatic mechanism; helium cooling; subatomic resolution crystallography; x-ray plus neutrons joint refinement
MeSH headings : Aldehyde Reductase / chemistry; Aldehyde Reductase / metabolism; Catalysis; Models, Molecular; Neutrons; Protons; Quantum Theory; X-Ray Diffraction / methods
Source: ORCID
Added: January 6, 2020

2008 journal article

Construction and characterization of mutant Dengue2 virus vaccine candidates displaying a host-range phenotype

Vaccine.

By: K. Smith, K. Nanda, C. Slominski, R. Hernandez, D. Brown & M. Thomas

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met)

NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557.

By: H. Lusic n, E. Gustilo n, F. Vendeix n, R. Kaiser n, M. Delaney n, W. Graham n, V. Moye n, W. Cantara n, P. Agris n, A. Deiters n

MeSH headings : Anticodon / chemistry; Base Sequence; Codon / metabolism; Cytidine / analogs & derivatives; Cytidine / chemistry; Humans; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; RNA / chemistry; RNA, Mitochondrial; RNA, Transfer, Met / chemical synthesis; RNA, Transfer, Met / chemistry; RNA, Transfer, Met / metabolism; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Effects of pH, Dissolved Oxygen, and Ionic Strength on the Survival of Escherichia coli O157:H7 in Organic Acid Solutions

JOURNAL OF FOOD PROTECTION, 71(12), 2404–2409.

By: A. Kreske n, K. Bjornsdottir n, F. Breidt n & H. Hassan n 

MeSH headings : Acids / pharmacology; Colony Count, Microbial; Consumer Product Safety; Cucumis sativus / microbiology; Dose-Response Relationship, Drug; Escherichia coli O157 / drug effects; Escherichia coli O157 / growth & development; Food Contamination / analysis; Food Preservation / methods; Humans; Hydrogen-Ion Concentration; Osmolar Concentration; Oxygen / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Insights into the Nature of DNA Binding of AbrB-like Transcription Factors

STRUCTURE, 16(11), 1702–1713.

By: D. Sullivan n, B. Bobay n, D. Kojetin *, R. Thompson n, M. Rance*, M. Strauch*, J. Cavanagh n

MeSH headings : Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; DNA / chemistry; DNA / metabolism; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / metabolism; Hydrogen Bonding; Magnetic Resonance Spectroscopy; Models, Molecular; Protein Conformation; Thermodynamics; Transcription Factors / chemistry; Transcription Factors / metabolism
Source: Web Of Science
Added: August 6, 2018

2008 journal article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

Plant Journal, 56(5), 840–854.

By: J. Schaff, F. Mbeunkui, K. Blackburn, D. Bird  & M. Goshe

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

A Disease-causing Point Mutation in Human Mitochondrial tRNA(Met) Results in tRNA Misfolding Leading to Defects in Translational Initiation and Elongation

JOURNAL OF BIOLOGICAL CHEMISTRY, 283(49), 34445–34456.

By: C. Jones*, C. Jones n, W. Graham n, P. Agris n & L. Spremulli*

MeSH headings : Animals; Base Sequence; Binding Sites; Cattle; Escherichia coli / enzymology; Humans; Mitochondria / enzymology; Mitochondria / metabolism; Mutation; Nucleic Acid Conformation; Nucleic Acid Denaturation; Optic Atrophy, Hereditary, Leber / genetics; Point Mutation; Protein Biosynthesis; RNA, Transfer, Met / chemistry; Thermodynamics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Changes in the Gallus gallus proteorne induced by Marek's disease virus

JOURNAL OF PROTEOME RESEARCH, 7(10), 4346–4358.

By: M. Ramaroson n, J. Ruby n, M. Goshe n & H. Liu n

author keywords: Marek's disease virus; chicken proteome; mu rpLC/MS/MS
MeSH headings : Animals; Chickens / virology; Computational Biology; Herpesvirus 2, Gallid / metabolism; Humans; Mass Spectrometry; Molecular Sequence Data; Peptides / analysis; Phosphopeptides / analysis; Proteome
Source: Web Of Science
Added: August 6, 2018

2008 journal article

RNA-RNA interactions between RNA elements at the 5 ' end and at the upstream of sgRNA of RNA genome are required for Potato virus X RNA replication

PLANT PATHOLOGY JOURNAL, 24(3), 289–295.

By: M. Park, S. Park, S. Cho, C. Hemenway*, H. Choi, S. Sohn, K. Kim*

author keywords: plus-strand RNA accumulation; PVX; replication; RNA-RNA base-pairing
Source: Web Of Science
Added: August 6, 2018

2008 review

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection

[Review of ]. Plant Physiology, 148(1), 436–454.

By: J. Ascencio-Ibanez, R. Sozzani, T. Lee, T. Chu, R. Wolfinger, R. Cella, L. Hanley-Bowdoin 

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling

DEVELOPMENTAL CELL, 15(2), 220–235.

By: X. Wang n, U. Kota n, K. He *, K. Blackburn n, J. Li *, M. Goshe n, S. Huber*, S. Clouse n

MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / enzymology; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Brassinosteroids; Cholestanols / metabolism; Cholestanols / pharmacology; Chromatography, Liquid; Flagellin / metabolism; Mass Spectrometry; Models, Biological; Molecular Sequence Data; Mutation / genetics; Phosphorylation / drug effects; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary; Signal Transduction / drug effects; Steroids, Heterocyclic / metabolism; Steroids, Heterocyclic / pharmacology; Substrate Specificity / drug effects
Source: Web Of Science
Added: August 6, 2018

2008 article

Successful cloning of the Yucatan minipig using commercial/occidental breeds as oocyte donors and embryo recipients

Estrada, J. L., Collins, B., York, A., Bischoff, S., Sommer, J., Tsai, S., … Piedrahita, J. A. (2008, June). CLONING AND STEM CELLS, Vol. 10, pp. 287–296.

By: J. Estrada n, B. Collins, A. York*, S. Bischoff*, J. Sommer*, S. Tsai*, R. Petters*, J. Piedrahita*

MeSH headings : Animals; Cell Line; Cloning, Organism / methods; Fibroblasts / cytology; Microsatellite Repeats; Nuclear Transfer Techniques; Oocytes / physiology; Sus scrofa; Swine; Swine, Miniature / embryology
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Sindbis virus conformational changes induced by a neutralizing anti-E1 monoclonal antibody

JOURNAL OF VIROLOGY, 82(12), 5750–5760.

By: R. Hernandez n, A. Paredes* & D. Brown n

MeSH headings : Animals; Antibodies, Monoclonal / pharmacology; Cricetinae; Epitopes; Hydrogen-Ion Concentration; Immunoglobulin Fab Fragments / immunology; Kidney / cytology; Membrane Glycoproteins / immunology; Neutralization Tests; Peptide Mapping; Protein Binding; Protein Conformation; Sindbis Virus / chemistry; Sindbis Virus / physiology; Sindbis Virus / ultrastructure; Viral Envelope Proteins / immunology; Virion / physiology; Virion / ultrastructure
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Preliminary neutron crystallographic analysis of selectively CH3-protonated deuterated rubredoxin from Pyrococcus furiosus

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 64(Pt 6), 537–540.

By: K. Weiss *, F. Meilleur n , M. Blakeley *, D. Myles * & F. Section

MeSH headings : Amino Acid Sequence; Cysteine / chemistry; Deuterium Exchange Measurement; Escherichia coli / genetics; Hydrogen Bonding; Iron / chemistry; Molecular Sequence Data; Neutron Diffraction; Protons; Pyrococcus furiosus / chemistry; Pyrococcus furiosus / genetics; Pyrococcus furiosus / isolation & purification; Rubredoxins / chemistry; Rubredoxins / isolation & purification; Sulfur / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 article

New sources and instrumentation for neutrons in biology (vol 345, pg 133, 2008)

Chemical Physics, Vol. 351, pp. 170–170.

By: S. Teixeira, G. Zaccai, J. Ankner, M. Bellissent-Funel, R. Bewley, M. Blakeley, P. Callow, L. Coates ...

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

BMC GENOMICS, 9.

By: S. Bischoff n, S. Tsai n, N. Hardison n, A. York n, B. Freking *, D. Nonneman*, G. Rohrer *, J. Piedrahita n

MeSH headings : Animals; Base Sequence; Computational Biology; DNA / genetics; Female; Fetus / metabolism; Gene Expression Profiling; INDEL Mutation; Linear Models; Male; Oligonucleotide Array Sequence Analysis / methods; Oligonucleotide Array Sequence Analysis / statistics & numerical data; Placenta / metabolism; Polymorphism, Single Nucleotide; Pregnancy; RNA / genetics; Species Specificity; Swine / genetics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Control of bacterial biofilms with marine alkaloid derivatives

MOLECULAR BIOSYSTEMS, 4(6), 614–621.

By: R. Huigens n, L. Ma *, C. Gambino n, P. Moeller*, A. Basso n, J. Cavanagh n, D. Wozniak *, C. Melander n

MeSH headings : Acinetobacter baumannii / drug effects; Acylation; Alkaloids / chemical synthesis; Alkaloids / chemistry; Alkaloids / pharmacology; Animals; Anti-Bacterial Agents / chemical synthesis; Anti-Bacterial Agents / chemistry; Anti-Bacterial Agents / pharmacology; Biofilms / drug effects; Biofilms / growth & development; Bordetella bronchiseptica / drug effects; Cell Line; Dose-Response Relationship, Drug; Imidazoles / chemical synthesis; Imidazoles / chemistry; Imidazoles / pharmacology; Mice; Microbial Sensitivity Tests; Molecular Structure; Pseudomonas aeruginosa / drug effects; Rats; Staphylococcus aureus / drug effects
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis†

Biochemistry, 47(30), 7782–7784.

By: H. Szurmant  n, B. Bobay n, R. White  n, D. Sullivan  n, R. Thompson n, T. Hwa  n, J. Hoch n, J. Cavanagh n

MeSH headings : Analysis of Variance; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; Magnetic Resonance Spectroscopy; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Proteins / chemistry; Proteins / metabolism; Signal Transduction
Sources: Crossref, Web Of Science
Added: August 6, 2018

2008 journal article

Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications

EMBO REPORTS, 9(7), 629–635.

By: P. Agris n

author keywords: entropy; order; pre-structured; rRNA; tRNA
MeSH headings : Anticodon / metabolism; Genetic Code; Nucleic Acid Conformation; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA, Transfer / chemistry; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribosomes / metabolism
Source: Web Of Science
Added: August 6, 2018