Works Published in 2008
Displaying works 1 - 20 of 42 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2008 journal article
Erratum to “New sources and instrumentation for neutrons in biology” [Chem. Phys. 345 (2008) 133–151]
Chemical Physics, 351(1-3), 170.
Sources: Crossref, ORCID
Added: September 9, 2020
2008 journal article
Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.
Proceedings of the National Academy of Sciences of the United States of America, 105(6), 1844–1848,
author keywords: enzymatic mechanism; helium cooling; subatomic resolution crystallography; x-ray plus neutrons joint refinement
MeSH headings : Aldehyde Reductase / chemistry; Aldehyde Reductase / metabolism; Catalysis; Models, Molecular; Neutrons; Protons; Quantum Theory; X-Ray Diffraction / methods
TL;DR:
Combined studies of the enzyme human aldose reductase using single-crystal x-ray data, neutron Laue data, and quantum mechanical modeling unveil the internal organization and mobility of the hydrogen bond network that defines the properties of the catalytic engine.
(via Semantic Scholar)
www.pnas.org (publisher PDF)
Source: ORCID
Added: January 6, 2020
2008 journal article
Construction and characterization of mutant Dengue2 virus vaccine candidates displaying a host-range phenotype
Vaccine.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Synthesis and investigation of the 5-formylcytidine modified, anticodon stem and loop of the human mitochondrial tRNA(Met)
NUCLEIC ACIDS RESEARCH, 36(20), 6548–6557.
MeSH headings : Anticodon / chemistry; Base Sequence; Codon / metabolism; Cytidine / analogs & derivatives; Cytidine / chemistry; Humans; Molecular Sequence Data; Nucleic Acid Conformation; Protein Biosynthesis; RNA / chemistry; RNA, Mitochondrial; RNA, Transfer, Met / chemical synthesis; RNA, Transfer, Met / chemistry; RNA, Transfer, Met / metabolism; Thermodynamics
TL;DR:
The first synthesis and analyses of the tRNA's anticodon stem and loop domain containing the 5-formylcytidine modification are reported, contributing to the tRNAs anticodon domain structure, thermodynamic properties and its ability to bind codons AUA and AUG in translational initiation and elongation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Effects of pH, Dissolved Oxygen, and Ionic Strength on the Survival of Escherichia coli O157:H7 in Organic Acid Solutions
JOURNAL OF FOOD PROTECTION, 71(12), 2404–2409.
MeSH headings : Acids / pharmacology; Colony Count, Microbial; Consumer Product Safety; Cucumis sativus / microbiology; Dose-Response Relationship, Drug; Escherichia coli O157 / drug effects; Escherichia coli O157 / growth & development; Food Contamination / analysis; Food Preservation / methods; Humans; Hydrogen-Ion Concentration; Osmolar Concentration; Oxygen / pharmacology
TL;DR:
The results demonstrate that E. coli O157:H7 may survive better than previously expected from studies with acid solutions containing dissolved oxygen, and many acid and acidified foods are sold in hermetically sealed containers with oxygen-limiting conditions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2008 journal article
Insights into the Nature of DNA Binding of AbrB-like Transcription Factors
STRUCTURE, 16(11), 1702–1713.
MeSH headings : Bacillus subtilis / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; DNA / chemistry; DNA / metabolism; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / metabolism; Hydrogen Bonding; Magnetic Resonance Spectroscopy; Models, Molecular; Protein Conformation; Thermodynamics; Transcription Factors / chemistry; Transcription Factors / metabolism
TL;DR:
RDC-refined NMR solution structures and dynamic properties of the DNA-binding domains of three Bacillus subtilis transition-state regulators: AbrB, Abh, and SpoVT are presented and a structural model of the complex between AbrBN(55) and its cognate promoter, abrB8 is generated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens
Plant Journal, 56(5), 840–854.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
A Disease-causing Point Mutation in Human Mitochondrial tRNA(Met) Results in tRNA Misfolding Leading to Defects in Translational Initiation and Elongation
JOURNAL OF BIOLOGICAL CHEMISTRY, 283(49), 34445–34456.
MeSH headings : Animals; Base Sequence; Binding Sites; Cattle; Escherichia coli / enzymology; Humans; Mitochondria / enzymology; Mitochondria / metabolism; Mutation; Nucleic Acid Conformation; Nucleic Acid Denaturation; Optic Atrophy, Hereditary, Leber / genetics; Point Mutation; Protein Biosynthesis; RNA, Transfer, Met / chemistry; Thermodynamics
TL;DR:
It is shown that the single 8U→C mutation leads to a failure of the tRNA to respond conformationally to Mg2+.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Changes in the Gallus gallus proteorne induced by Marek's disease virus
JOURNAL OF PROTEOME RESEARCH, 7(10), 4346–4358.
author keywords: Marek's disease virus; chicken proteome; mu rpLC/MS/MS
MeSH headings : Animals; Chickens / virology; Computational Biology; Herpesvirus 2, Gallid / metabolism; Humans; Mass Spectrometry; Molecular Sequence Data; Peptides / analysis; Phosphopeptides / analysis; Proteome
TL;DR:
The results suggest that MDV infection may alter host cell biochemistry by perturbing the host's proteomic composition with respect to Marek's disease virus.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
RNA-RNA interactions between RNA elements at the 5 ' end and at the upstream of sgRNA of RNA genome are required for Potato virus X RNA replication
PLANT PATHOLOGY JOURNAL, 24(3), 289–295.
author keywords: plus-strand RNA accumulation; PVX; replication; RNA-RNA base-pairing
TL;DR:
Results indicate that the RNA element located at the 5` end of PVX genome involved in RNA-RNA interactions and play a key role in high-level accumulation of plus-strand RNA in vivo.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 review
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection
[Review of ]. Plant Physiology, 148(1), 436–454.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling
DEVELOPMENTAL CELL, 15(2), 220–235.
MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / enzymology; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Brassinosteroids; Cholestanols / metabolism; Cholestanols / pharmacology; Chromatography, Liquid; Flagellin / metabolism; Mass Spectrometry; Models, Biological; Molecular Sequence Data; Mutation / genetics; Phosphorylation / drug effects; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Protein Structure, Tertiary; Signal Transduction / drug effects; Steroids, Heterocyclic / metabolism; Steroids, Heterocyclic / pharmacology; Substrate Specificity / drug effects
TL;DR:
A sequential transphosphorylation model in which BRI1 controls signaling specificity by direct BR binding followed by substrate phosphorylation is proposed, which suggests both conservation and distinct differences between the molecular mechanisms regulating phosphorylated-dependent kinase activation in plant and animal receptor kinases.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 article
Successful cloning of the Yucatan minipig using commercial/occidental breeds as oocyte donors and embryo recipients
Estrada, J. L., Collins, B., York, A., Bischoff, S., Sommer, J., Tsai, S., … Piedrahita, J. A. (2008, June). CLONING AND STEM CELLS, Vol. 10, pp. 287–296.
MeSH headings : Animals; Cell Line; Cloning, Organism / methods; Fibroblasts / cytology; Microsatellite Repeats; Nuclear Transfer Techniques; Oocytes / physiology; Sus scrofa; Swine; Swine, Miniature / embryology
TL;DR:
This report shows that it is possible to produce viable Yucatan SCNT clones and opens up the possibility of developing valuable biomedical models in this porcine breed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Sindbis virus conformational changes induced by a neutralizing anti-E1 monoclonal antibody
JOURNAL OF VIROLOGY, 82(12), 5750–5760.
MeSH headings : Animals; Antibodies, Monoclonal / pharmacology; Cricetinae; Epitopes; Hydrogen-Ion Concentration; Immunoglobulin Fab Fragments / immunology; Kidney / cytology; Membrane Glycoproteins / immunology; Neutralization Tests; Peptide Mapping; Protein Binding; Protein Conformation; Sindbis Virus / chemistry; Sindbis Virus / physiology; Sindbis Virus / ultrastructure; Viral Envelope Proteins / immunology; Virion / physiology; Virion / ultrastructure
TL;DR:
A model is proposed which postulates that the induction of conformational changes in the infectious state of a metastable enveloped virus may be a general mechanism of antibody inactivation of virus infectivity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Preliminary neutron crystallographic analysis of selectively CH3-protonated deuterated rubredoxin from Pyrococcus furiosus
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 64(Pt 6), 537–540.
MeSH headings : Amino Acid Sequence; Cysteine / chemistry; Deuterium Exchange Measurement; Escherichia coli / genetics; Hydrogen Bonding; Iron / chemistry; Molecular Sequence Data; Neutron Diffraction; Protons; Pyrococcus furiosus / chemistry; Pyrococcus furiosus / genetics; Pyrococcus furiosus / isolation & purification; Rubredoxins / chemistry; Rubredoxins / isolation & purification; Sulfur / chemistry
TL;DR:
Production, crystallization and preliminary neutron analysis of a selectively CH3-protonated deuterated PfRd sample, which provided a high-quality neutron data set that extended to 1.75 A resolution using the new LADI-III instrument at the Institut Laue-Langevin, are reported.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2008 article
New sources and instrumentation for neutrons in biology (vol 345, pg 133, 2008)
Chemical Physics, Vol. 351, pp. 170–170.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays
BMC GENOMICS, 9.
MeSH headings : Animals; Base Sequence; Computational Biology; DNA / genetics; Female; Fetus / metabolism; Gene Expression Profiling; INDEL Mutation; Linear Models; Male; Oligonucleotide Array Sequence Analysis / methods; Oligonucleotide Array Sequence Analysis / statistics & numerical data; Placenta / metabolism; Polymorphism, Single Nucleotide; Pregnancy; RNA / genetics; Species Specificity; Swine / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Control of bacterial biofilms with marine alkaloid derivatives
MOLECULAR BIOSYSTEMS, 4(6), 614–621.
MeSH headings : Acinetobacter baumannii / drug effects; Acylation; Alkaloids / chemical synthesis; Alkaloids / chemistry; Alkaloids / pharmacology; Animals; Anti-Bacterial Agents / chemical synthesis; Anti-Bacterial Agents / chemistry; Anti-Bacterial Agents / pharmacology; Biofilms / drug effects; Biofilms / growth & development; Bordetella bronchiseptica / drug effects; Cell Line; Dose-Response Relationship, Drug; Imidazoles / chemical synthesis; Imidazoles / chemistry; Imidazoles / pharmacology; Mice; Microbial Sensitivity Tests; Molecular Structure; Pseudomonas aeruginosa / drug effects; Rats; Staphylococcus aureus / drug effects
TL;DR:
It is demonstrated that TAGE does not have selective toxicity against cells within the biofilm state, will inhibit biofilm development under flow conditions, indicating that the CV staining protocol correlates with the ability to be active under biomimetic conditions, and will disperse preformed P. aeruginosa biofilms.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis†
Biochemistry, 47(30), 7782–7784.
MeSH headings : Analysis of Variance; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Binding Sites; Magnetic Resonance Spectroscopy; Protein Binding; Protein Structure, Secondary; Protein Structure, Tertiary; Proteins / chemistry; Proteins / metabolism; Signal Transduction
TL;DR:
C covariance is shown to identify a cluster of co-evolving dynamic residues in two-component proteins and NMR dynamics and structural studies suggest that motions serve to precisely arrange the site of phosphoryl transfer within the complex.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Crossref, Web Of Science
Added: August 6, 2018
2008 journal article
Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications
EMBO REPORTS, 9(7), 629–635.
author keywords: entropy; order; pre-structured; rRNA; tRNA
MeSH headings : Anticodon / metabolism; Genetic Code; Nucleic Acid Conformation; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA, Transfer / chemistry; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribosomes / metabolism
TL;DR:
The modified nucleosides of the anticodon domain of tRNA restrict its dynamics and shape its architecture; therefore, the need of the ribosome to constrain or remodel each tRNA to fit the decoding site is diminished, which reduces an entropic penalty for translation and provides a physicochemical basis for the conservation of RNA modifications in general.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
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